BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0070.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06639643.1| conserved hypothetical protein [Serratia odor... 529 e-148 ref|YP_003381935.1| NAD-dependent epimerase/dehydratase [Kribbel... 364 1e-98 ref|YP_002542684.1| nucleoside-diphosphate-sugar epimerase [Agro... 363 1e-98 ref|ZP_08285667.1| dehydratase [Streptomyces griseoaurantiacus M... 348 7e-94 ref|YP_004814755.1| nucleoside-diphosphate-sugar epimerase [Stre... 333 2e-89 >ref|ZP_06639643.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gb|EFE95288.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 306 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 261/301 (86%), Positives = 277/301 (92%) Query: 1 MSQNIFIIGASGFVGSMLAKHFLADGQRVSGLARTDAAEAVLRTAGTSVIRGDLDANVAP 60 MSQNIFIIGASGFVG LAKHFLADGQRV GLARTD A L+T G +V+RGDL+ NVAP Sbjct: 1 MSQNIFIIGASGFVGGTLAKHFLADGQRVVGLARTDRTAATLKTMGIAVVRGDLEVNVAP 60 Query: 61 VLAAARSADVTIYAAQVAFEREPTIIRTLCEALAGSGKTFIFLSGSGVFMQRTGGAWSPD 120 VLAAARSA+VTIYAAQVAFE EP IIRTLC ALAGSGKTFIFLSGSGVFMQRTGGAWSPD Sbjct: 61 VLAAARSAEVTIYAAQVAFEHEPAIIRTLCGALAGSGKTFIFLSGSGVFMQRTGGAWSPD 120 Query: 121 SFAEDDPFVPEPLALPRVEAEAIVRAAAEHGLRSMVIRPPVIWGPGDKGPLASVYRSVAV 180 SFAEDDPF+PEPLALPRVEAE IVRAA E GLRSMVIRPPVIWGP D GP+ASVYRSVA Sbjct: 121 SFAEDDPFLPEPLALPRVEAEGIVRAAVEQGLRSMVIRPPVIWGPDDNGPVASVYRSVAA 180 Query: 181 TGAACYVGSGLAAYSNVHSADLAQLFSLGVERGRAGALYHAAAGEIPYRWIAEAVARDLG 240 TGAACY+GSGLA Y++V+SADLAQLFSLGVERG+AGALYHAAAGEIPYRWIAEAVARDLG Sbjct: 181 TGAACYIGSGLATYTHVYSADLAQLFSLGVERGQAGALYHAAAGEIPYRWIAEAVARDLG 240 Query: 241 VKTRSLTMDEASGVFGPFGALLLSACSRSRDPRTRSDLGWQPTQFDFLSQVGEPRLRALA 300 V TRSLTM EA+ VFGPFGALLLSACSRSRDPRTR++LGW+P QFDFLSQVGEPRLRALA Sbjct: 241 VNTRSLTMGEATEVFGPFGALLLSACSRSRDPRTRAELGWRPNQFDFLSQVGEPRLRALA 300 Query: 301 N 301 N Sbjct: 301 N 301 >ref|YP_003381935.1| NAD-dependent epimerase/dehydratase [Kribbella flavida DSM 17836] gb|ADB33136.1| NAD-dependent epimerase/dehydratase [Kribbella flavida DSM 17836] Length = 319 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 189/309 (61%), Positives = 235/309 (76%) Query: 1 MSQNIFIIGASGFVGSMLAKHFLADGQRVSGLARTDAAEAVLRTAGTSVIRGDLDANVAP 60 MSQ +F+IGA+G+ G +LA+HF+++G +VSG AR+ A A L G + + GDLD + Sbjct: 1 MSQKVFVIGATGYFGGVLARHFVSEGHQVSGSARSHEAGAALAADGIAPVIGDLDDAIDS 60 Query: 61 VLAAARSADVTIYAAQVAFEREPTIIRTLCEALAGSGKTFIFLSGSGVFMQRTGGAWSPD 120 +L A R +DV IYAAQVAFEREP ++ L ALAG+GKT +F SGSGVFM+ G WS + Sbjct: 61 LLTAVRESDVVIYAAQVAFEREPWVVEQLSSALAGTGKTLLFTSGSGVFMKDNRGEWSSE 120 Query: 121 SFAEDDPFVPEPLALPRVEAEAIVRAAAEHGLRSMVIRPPVIWGPGDKGPLASVYRSVAV 180 AEDDPF P L RVEAE VRAA + G+RSMV+RPPVIWGPGD G +A VYR+VA Sbjct: 121 VLAEDDPFEPSALMADRVEAERAVRAATDRGVRSMVVRPPVIWGPGDNGQVARVYRTVAT 180 Query: 181 TGAACYVGSGLAAYSNVHSADLAQLFSLGVERGRAGALYHAAAGEIPYRWIAEAVARDLG 240 TGAACYVG GLAAYSNVHSADLA+L+SL +E+G GALYHAA GEIP+RWIAE+VARDLG Sbjct: 181 TGAACYVGPGLAAYSNVHSADLARLYSLAIEKGAPGALYHAAGGEIPWRWIAESVARDLG 240 Query: 241 VKTRSLTMDEASGVFGPFGALLLSACSRSRDPRTRSDLGWQPTQFDFLSQVGEPRLRALA 300 V+TRSL ++EA +FGP ++ SA SRSRDPR+R++LGW+P D L+QVGEPRLRALA Sbjct: 241 VQTRSLAIEEADEMFGPEATMIYSASSRSRDPRSRAELGWKPVHRDMLTQVGEPRLRALA 300 Query: 301 NHNQFNQGA 309 + G+ Sbjct: 301 QPDTSQPGS 309 >ref|YP_002542684.1| nucleoside-diphosphate-sugar epimerase [Agrobacterium vitis S4] gb|ACM39499.1| nucleoside-diphosphate-sugar epimerase [Agrobacterium vitis S4] Length = 310 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 179/306 (58%), Positives = 226/306 (73%) Query: 1 MSQNIFIIGASGFVGSMLAKHFLADGQRVSGLARTDAAEAVLRTAGTSVIRGDLDANVAP 60 M+Q++FIIGA+GFVG +A+HF++ RV+GLAR+ A LR AG +V GDL + Sbjct: 1 MAQHVFIIGATGFVGGAVARHFVSRRFRVTGLARSGEAAGRLRAAGMTVQIGDLAERLLT 60 Query: 61 VLAAARSADVTIYAAQVAFEREPTIIRTLCEALAGSGKTFIFLSGSGVFMQRTGGAWSPD 120 V AR+ADV ++AAQV E ++ L +AL GSGKTF+FLSGSGV QRT GAWS + Sbjct: 61 VTEFARNADVVMFAAQVPPHVELDAVKALLDALDGSGKTFVFLSGSGVLCQRTQGAWSAE 120 Query: 121 SFAEDDPFVPEPLALPRVEAEAIVRAAAEHGLRSMVIRPPVIWGPGDKGPLASVYRSVAV 180 SF EDDPF PEPLA+ RVEAE +VRA + G+R +V+RPP+IWGP D G ++ VYRSVA Sbjct: 121 SFGEDDPFEPEPLAVARVEAETLVRATSSRGIRGIVMRPPLIWGPEDHGHVSMVYRSVAA 180 Query: 181 TGAACYVGSGLAAYSNVHSADLAQLFSLGVERGRAGALYHAAAGEIPYRWIAEAVARDLG 240 TGAACY+G GLAAYSNVH D+A+LF L V +G GA+YHAAAGEIP RWIAEAVARDLG Sbjct: 181 TGAACYIGDGLAAYSNVHVDDIARLFELAVTKGEGGAVYHAAAGEIPNRWIAEAVARDLG 240 Query: 241 VKTRSLTMDEASGVFGPFGALLLSACSRSRDPRTRSDLGWQPTQFDFLSQVGEPRLRALA 300 +TR+++M EA+ ++G FGAL++S SR RD +TR LGW P D LS++GEPRLR LA Sbjct: 241 CETRNVSMSEAADIWGEFGALIMSVSSRVRDAQTRKSLGWSPRHTDMLSEIGEPRLRTLA 300 Query: 301 NHNQFN 306 + Sbjct: 301 TSSTLE 306 >ref|ZP_08285667.1| dehydratase [Streptomyces griseoaurantiacus M045] gb|EGG48582.1| dehydratase [Streptomyces griseoaurantiacus M045] Length = 302 Score = 348 bits (893), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 173/298 (58%), Positives = 213/298 (71%) Query: 4 NIFIIGASGFVGSMLAKHFLADGQRVSGLARTDAAEAVLRTAGTSVIRGDLDANVAPVLA 63 N+FIIGA+GFVG LA+H +A+G V+GLART++A LR G S + DLD A + Sbjct: 2 NVFIIGATGFVGGHLARHLIAEGHTVTGLARTESAALTLRARGISPVAADLDTRRAGAVE 61 Query: 64 AARSADVTIYAAQVAFEREPTIIRTLCEALAGSGKTFIFLSGSGVFMQRTGGAWSPDSFA 123 AA AD IYAAQ E E + L AL G+GKT IFLSGSGV MQRT GAWSPD+FA Sbjct: 62 AALRADAVIYAAQADPEHETATVADLTRALTGTGKTLIFLSGSGVLMQRTAGAWSPDTFA 121 Query: 124 EDDPFVPEPLALPRVEAEAIVRAAAEHGLRSMVIRPPVIWGPGDKGPLASVYRSVAVTGA 183 EDDPF+PEPLA R AE V AA HG R+MV+RP +IWGPGD G ++ +Y+SVAV GA Sbjct: 122 EDDPFLPEPLAGSRKAAEDTVLAAVAHGTRAMVVRPGLIWGPGDHGHMSMIYQSVAVVGA 181 Query: 184 ACYVGSGLAAYSNVHSADLAQLFSLGVERGRAGALYHAAAGEIPYRWIAEAVARDLGVKT 243 A Y+G+GLA YS+VH D+ +LF L + RGR+G LYHA AGE P RWIAE VA+DLGVK Sbjct: 182 AAYIGNGLATYSHVHIDDVTRLFGLALARGRSGGLYHAVAGETPNRWIAERVAQDLGVKA 241 Query: 244 RSLTMDEASGVFGPFGALLLSACSRSRDPRTRSDLGWQPTQFDFLSQVGEPRLRALAN 301 RS+T++EA V+GPFGAL+++A SR R +LGWQP D L+ +G+ RLRALA Sbjct: 242 RSVTLEEAEQVWGPFGALIMAASSRIRAVAAHRELGWQPQHADMLTMIGDQRLRALAT 299 >ref|YP_004814755.1| nucleoside-diphosphate-sugar epimerase [Streptomyces violaceusniger Tu 4113] gb|AEM84475.1| nucleoside-diphosphate-sugar epimerase [Streptomyces violaceusniger Tu 4113] Length = 302 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 169/298 (56%), Positives = 205/298 (68%) Query: 4 NIFIIGASGFVGSMLAKHFLADGQRVSGLARTDAAEAVLRTAGTSVIRGDLDANVAPVLA 63 IF+IGA+GFVG + +H G V+GLART+AA L+ G + + GDL+ ++ Sbjct: 2 EIFVIGATGFVGGAVTRHLAGAGHHVTGLARTEAAAVALKAQGITPVAGDLETRRPETIS 61 Query: 64 AARSADVTIYAAQVAFEREPTIIRTLCEALAGSGKTFIFLSGSGVFMQRTGGAWSPDSFA 123 AAR AD IYAAQ +E + L + LAGSG+T +FLSGSGVF+QRT GAWS DSFA Sbjct: 62 AARLADTVIYAAQADPAQETATLDELIQTLAGSGRTLVFLSGSGVFLQRTAGAWSQDSFA 121 Query: 124 EDDPFVPEPLALPRVEAEAIVRAAAEHGLRSMVIRPPVIWGPGDKGPLASVYRSVAVTGA 183 EDD F EPLA R E V AAA HG+R+MVIRP +IWG GD G L VYRSVA TGA Sbjct: 122 EDDSFTVEPLATARKAVEDKVLAAASHGMRAMVIRPGLIWGSGDHGHLPMVYRSVAATGA 181 Query: 184 ACYVGSGLAAYSNVHSADLAQLFSLGVERGRAGALYHAAAGEIPYRWIAEAVARDLGVKT 243 ACYVG GL YS+VH D+ +LF+L E+G +GALYHA AGE P RWIAE VA DLG T Sbjct: 182 ACYVGEGLNTYSHVHVDDVTRLFALAFEKGTSGALYHAVAGETPNRWIAEWVADDLGCGT 241 Query: 244 RSLTMDEASGVFGPFGALLLSACSRSRDPRTRSDLGWQPTQFDFLSQVGEPRLRALAN 301 RS+ EA+ ++G FGAL+++A SR R PRTR LGW P D L+ VGEPRLR LA+ Sbjct: 242 RSVDEGEAAAIWGQFGALIMAASSRCRAPRTRRQLGWYPRHTDMLTMVGEPRLRELAS 299