BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0069.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06639642.1| LysR family transcriptional regulator [Serrat... 542 e-152 ref|YP_004681074.1| LysR family transcriptional regulator [Cupri... 317 1e-84 ref|YP_586431.1| LysR family transcriptional regulator [Cupriavi... 316 3e-84 ref|YP_004029205.1| transcriptional regulators, lysR family [Bur... 309 4e-82 ref|YP_576351.1| LysR family transcriptional regulator [Nitrobac... 286 3e-75 >ref|ZP_06639642.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gb|EFE95287.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 294 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 270/292 (92%), Positives = 278/292 (95%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +LNGISLDYLRTFVAAADHGSFSAAGR IGRAQSVVSQTIASLEGQLGV LFERVGRYPK Sbjct: 1 MLNGISLDYLRTFVAAADHGSFSAAGRVIGRAQSVVSQTIASLEGQLGVTLFERVGRYPK 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT QGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPH CLTDALGSFK Sbjct: 61 LTVQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHRCLTDALGSFKAH 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F STPLRLHVEALGRVAELV+ GQCSLGITGTLPFLPPGLAAERLF+EEM+TV APGSPL Sbjct: 121 FPSTPLRLHVEALGRVAELVIKGQCSLGITGTLPFLPPGLAAERLFNEEMITVAAPGSPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 GR GPIAFRELLDETQLVLTDRSSLT+GVDYGVQG+NIWRLADLG+KHAFLRAGLGWGH Sbjct: 181 AGRNGPIAFRELLDETQLVLTDRSSLTNGVDYGVQGENIWRLADLGSKHAFLRAGLGWGH 240 Query: 241 MPRWLINEDVKEGRLVRIELEGPSAGLLPFQATYLSDRLPGPAGRWLLERFQ 292 MPRWLI ED+KEGRLVRIELEGPSAGLLPFQA Y SDRLPGPAGRWLLERFQ Sbjct: 241 MPRWLIGEDLKEGRLVRIELEGPSAGLLPFQAIYPSDRLPGPAGRWLLERFQ 292 >ref|YP_004681074.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79842.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 300 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 168/296 (56%), Positives = 203/296 (68%), Gaps = 2/296 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L+G+SLD LRTF+AAAD GSFSAAGR + RAQSVVS T+A+LE Q+ V LF+R GRYP+ Sbjct: 1 MLDGVSLDQLRTFIAAADEGSFSAAGRKLRRAQSVVSHTLANLEAQIDVRLFDRGGRYPR 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT QGT LLA AR VV G D +KAR+ + GLE ELS+VVDVM+P LT A+G F+E Sbjct: 61 LTEQGTALLAQARLVVSGMDGFKSKARAMAEGLEPELSVVVDVMYPMASLTGAVGEFREA 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F TPLRL+VEALG V VL C LGI+G++P +P L AE+L MVTVVAP PL Sbjct: 121 FPHTPLRLYVEALGAVLRPVLENVCRLGISGSMPVVPQALEAEKLLDVPMVTVVAPQHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 R+ I EL D QLVLTDR++L+ G YGV WRLADLGAKHAFLRAG GWGH Sbjct: 181 AARKRLIRAAELEDHVQLVLTDRTTLSEGRAYGVFSPLTWRLADLGAKHAFLRAGFGWGH 240 Query: 241 MPRWLINEDVKEGRLVRIELEG--PSAGLLPFQATYLSDRLPGPAGRWLLERFQST 294 MP ++ D+ +G LV + LE P + A Y D PGPA RW L+R + T Sbjct: 241 MPVAMVQPDLDQGTLVPLRLESFQPRTPPIAMFAVYRKDAPPGPAARWFLKRLKGT 296 >ref|YP_586431.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11162.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 304 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 162/294 (55%), Positives = 204/294 (69%), Gaps = 2/294 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L+ +SLD LRTF+AA D GSFSAAGR + RAQSVVS T+A+LEGQ+GV LF+R GRYP+ Sbjct: 1 MLDAVSLDQLRTFIAAVDEGSFSAAGRKLRRAQSVVSHTLANLEGQIGVQLFDRSGRYPR 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT QGT LLA AR VV G D + AR+ + GLE ELS+VVDVM+P LTDA+G+F++ Sbjct: 61 LTEQGTALLAQARLVVSGMDGFKSTARAIAEGLEPELSVVVDVMYPMASLTDAVGAFRKA 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F TPLRL+VEALG V + VL QC LGI+G++P +P + AE+L MVTV +P PL Sbjct: 121 FPHTPLRLYVEALGAVLQPVLAQQCRLGISGSMPSVPEVMDAEKLLDVPMVTVTSPSHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 R G + R+L QLVLTDR+SLT G+ + V W LADLGAKHAFLRAG GWGH Sbjct: 181 ATRTGVLRPRDLKAHVQLVLTDRTSLTDGMTFDVFSPQTWHLADLGAKHAFLRAGFGWGH 240 Query: 241 MPRWLINEDVKEGRLVRIELE--GPSAGLLPFQATYLSDRLPGPAGRWLLERFQ 292 MP ++ D+ G LVR+++E P + A Y D PGPAG+W L R + Sbjct: 241 MPVEMVQHDLDTGYLVRLQIEQFQPHTPPISMFAVYRKDTPPGPAGQWFLRRLK 294 >ref|YP_004029205.1| transcriptional regulators, lysR family [Burkholderia rhizoxinica HKI 454] emb|CBW75061.1| Transcriptional regulators, LysR family [Burkholderia rhizoxinica HKI 454] Length = 300 Score = 309 bits (791), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 162/296 (54%), Positives = 203/296 (68%), Gaps = 2/296 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L+G+SLD LRTF+AAAD GSFSAAGR + RAQSVVSQT+A+LE Q+ V LF+R RYP+ Sbjct: 1 MLDGVSLDQLRTFIAAADEGSFSAAGRRLRRAQSVVSQTLANLEDQIDVQLFDRSSRYPR 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT QGT LL A VV AD +KAR+ + GLE ELS+VVDVM+P LT A+G F++ Sbjct: 61 LTEQGTALLVQAHLVVSAADDFKSKARAIAQGLEPELSVVVDVMYPMASLTAAVGEFRDA 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F TPLRL+VEALG V VL+ +C LGI+G++P +P + AE+L MVTV AP PL Sbjct: 121 FPHTPLRLYVEALGAVMRPVLDRECRLGISGSMPAVPKMVDAEKLLDVPMVTVAAPAHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 + I REL + QLVLTDR++LT G +GV WRLADLGAKHAFLRAG GWGH Sbjct: 181 ASIKRVIRLRELEEHVQLVLTDRTTLTEGKTFGVLSPLTWRLADLGAKHAFLRAGFGWGH 240 Query: 241 MPRWLINEDVKEGRLV--RIELEGPSAGLLPFQATYLSDRLPGPAGRWLLERFQST 294 MP ++++D+ G LV RIE P + A Y D PG AGRW L+R + + Sbjct: 241 MPVPMVHDDIVSGELVPLRIEHFQPHTPPIAMFAIYRKDTPPGFAGRWFLDRLKHS 296 >ref|YP_576351.1| LysR family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE61891.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis X14] Length = 309 Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 152/296 (51%), Positives = 195/296 (65%), Gaps = 2/296 (0%) Query: 1 LLNGISLDYLRTFVAAADHGSFSAAGRAIGRAQSVVSQTIASLEGQLGVALFERVGRYPK 60 +L +S D LR FVAAAD GSFSAA R + R QS VS+ I SLE QLGV LF+R GRYPK Sbjct: 1 MLESVSFDQLRMFVAAADEGSFSAAARRVRRTQSAVSEAILSLETQLGVVLFDRAGRYPK 60 Query: 61 LTPQGTNLLADARRVVMGADALTAKARSFSAGLESELSIVVDVMFPHPCLTDALGSFKER 120 LT G LLADAR V+ G DA+ A+A+ + GLE+EL+ V+DV P + +A F+ + Sbjct: 61 LTTDGVVLLADARAVISGVDAMKARAKGIAGGLEAELTAVLDVFLPIEVIAEAAREFRIQ 120 Query: 121 FRSTPLRLHVEALGRVAELVLNGQCSLGITGTLPFLPPGLAAERLFSEEMVTVVAPGSPL 180 F +TPLR++VEALG + VL+G+ S+G+ G+LP LPPGL ERLF +++ V A PL Sbjct: 121 FPATPLRIYVEALGGAVQPVLDGRASIGVVGSLPTLPPGLIKERLFDVKLMMVAAASHPL 180 Query: 181 TGRQGPIAFRELLDETQLVLTDRSSLTSGVDYGVQGKNIWRLADLGAKHAFLRAGLGWGH 240 +G I EL QLVLTDRS+LT G GV + W LADL AKHAFL +GLG+G Sbjct: 181 ASYRGTIPKEELARHVQLVLTDRSTLTEGRTIGVMSPSTWHLADLFAKHAFLISGLGFGG 240 Query: 241 MPRWLINEDVKEGRLVRIEL-EGPSAGL-LPFQATYLSDRLPGPAGRWLLERFQST 294 MP + D+ +GRLV + + E P GL LP A Y PGPAGRW++ER ++ Sbjct: 241 MPLHTVARDIAKGRLVELSIEEAPPGGLPLPMFAVYREGEPPGPAGRWMIERLKNC 296