BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0063.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum serope...   280   7e-74
ref|YP_004752009.1| tmRNA-binding protein SmpB [Collimonas fungi...   250   5e-65
ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae ...   246   6e-64
ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenico...   246   6e-64
ref|ZP_04577940.1| tmRNA-binding protein SmpB [Oxalobacter formi...   240   4e-62

>ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63701.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1]
          Length = 149

 Score =  280 bits (715), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 128/149 (85%), Positives = 143/149 (95%)

Query: 1   MSIVDNKKAFFDYFVEERFEAGIVLEGWEVKAIRAGKAQIKEAYVTIRNGEIFLFGAHIS 60
           MSI+DNKKAFFDYF+EERFEAG+VL+GWEVK+IRAG+ Q+KEAYV +RNGE++LFG HIS
Sbjct: 1   MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNASEIDKLIGKVERSGYTLMPLNLHFSKGRIKCEIGLAK 120
           ALTSTSTHVHPETTRTRKLLLNA+EI KLIGKVERSGYTL+PLNLH++KGRIKC+IGLAK
Sbjct: 61  ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYNKGRIKCDIGLAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQAAMKTHRR 149
           GKKQHDKRETEKQRDSQREIQ AMK HRR
Sbjct: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149


>ref|YP_004752009.1| tmRNA-binding protein SmpB [Collimonas fungivorans Ter331]
 gb|AEK61186.1| tmRNA-binding protein SmpB [Collimonas fungivorans Ter331]
          Length = 149

 Score =  250 bits (638), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 133/149 (89%)

Query: 1   MSIVDNKKAFFDYFVEERFEAGIVLEGWEVKAIRAGKAQIKEAYVTIRNGEIFLFGAHIS 60
           MSI+DNKK F DYF+EERFEAG+ L GWEVK+IRAG+A +KEAYV +RNGEI+LFGAHIS
Sbjct: 1   MSIIDNKKVFHDYFIEERFEAGMELHGWEVKSIRAGRANLKEAYVIVRNGEIYLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNASEIDKLIGKVERSGYTLMPLNLHFSKGRIKCEIGLAK 120
           AL S S+HVHPE  RTRKLLL+A EI KLI KVERSGYTL+P+NLH+ +GRIKCEIGLAK
Sbjct: 61  ALLSASSHVHPEAVRTRKLLLHAEEIKKLIVKVERSGYTLVPINLHYLRGRIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQAAMKTHRR 149
           GKKQHDKR+TE+QRD +RE+QAAMK HRR
Sbjct: 121 GKKQHDKRDTERQRDGEREVQAAMKQHRR 149


>ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32018.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480]
          Length = 149

 Score =  246 bits (629), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 132/149 (88%)

Query: 1   MSIVDNKKAFFDYFVEERFEAGIVLEGWEVKAIRAGKAQIKEAYVTIRNGEIFLFGAHIS 60
           M+IVDN+KAF DYFVEERFEAG+ L+GWE K+IRAG+ Q+KEAYV +RN E+FLFGAHIS
Sbjct: 1   MTIVDNRKAFHDYFVEERFEAGLSLQGWEAKSIRAGRVQLKEAYVIVRNNEVFLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNASEIDKLIGKVERSGYTLMPLNLHFSKGRIKCEIGLAK 120
           ALTSTSTHVHPE TRTRKLLL+A+EI K+I KVERSGYTL+P+NLH+  GRIK E+GLAK
Sbjct: 61  ALTSTSTHVHPEATRTRKLLLHAAEIKKMIIKVERSGYTLVPINLHYVGGRIKLEVGLAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQAAMKTHRR 149
           GKKQHDKR TE+ RD QRE+  AMKTHRR
Sbjct: 121 GKKQHDKRATERDRDGQREVAQAMKTHRR 149


>ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
 emb|CAL61528.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
          Length = 149

 Score =  246 bits (629), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 116/149 (77%), Positives = 131/149 (87%)

Query: 1   MSIVDNKKAFFDYFVEERFEAGIVLEGWEVKAIRAGKAQIKEAYVTIRNGEIFLFGAHIS 60
           MSIVDN+KAF DYF+EERFEAGIVL+GWEVKAIRAG++Q+KEAYV +RN EIFLFGAHIS
Sbjct: 1   MSIVDNRKAFHDYFIEERFEAGIVLQGWEVKAIRAGRSQLKEAYVIVRNDEIFLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNASEIDKLIGKVERSGYTLMPLNLHFSKGRIKCEIGLAK 120
            L S STHV P+  RTRKLLL A EI KL  KVER+GYTL+PLNLH+ KG IKCEIGLAK
Sbjct: 61  PLASASTHVTPDPVRTRKLLLKADEIKKLSIKVERAGYTLVPLNLHYQKGYIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQAAMKTHRR 149
           GKKQHDKR++EKQRD+QREIQA MK +RR
Sbjct: 121 GKKQHDKRDSEKQRDTQREIQAVMKQNRR 149


>ref|ZP_04577940.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS]
 gb|EEO28902.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS]
          Length = 149

 Score =  240 bits (613), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/149 (75%), Positives = 131/149 (87%)

Query: 1   MSIVDNKKAFFDYFVEERFEAGIVLEGWEVKAIRAGKAQIKEAYVTIRNGEIFLFGAHIS 60
           M+I DNKKAF DYF+EERFEAG+ LEGWEVK+IRAG+ Q+KEAYV +++GEIFLFGAHIS
Sbjct: 1   MTIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKSGEIFLFGAHIS 60

Query: 61  ALTSTSTHVHPETTRTRKLLLNASEIDKLIGKVERSGYTLMPLNLHFSKGRIKCEIGLAK 120
            L + STH+ P+  R RKLL++ASEI KLIGKVER+GYTL+PLNLHFSKGRIKCEIGLAK
Sbjct: 61  PLPTASTHIRPDPVRDRKLLMHASEIGKLIGKVERAGYTLVPLNLHFSKGRIKCEIGLAK 120

Query: 121 GKKQHDKRETEKQRDSQREIQAAMKTHRR 149
           GKKQ+DKRETEK+RD QRE Q  MK +RR
Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQNRR 149