BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0060.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775607.1| two component response regulator protein [He... 428 e-118 ref|YP_283930.1| response regulator receiver:transcriptional reg... 322 2e-86 ref|YP_004039724.1| winged helix family two component transcript... 322 4e-86 ref|YP_003051026.1| winged helix family two component transcript... 321 7e-86 ref|YP_003847784.1| two component transcriptional regulator, win... 308 6e-82 >ref|YP_003775607.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63699.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 203/229 (88%), Positives = 218/229 (95%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 MSKVLLIDDD+ELVDMLKEYLEQEKFEV VAYDGE+G EAL+GQYAI VLDVMMPRLNG Sbjct: 1 MSKVLLIDDDVELVDMLKEYLEQEKFEVNVAYDGEAGAAEALTGQYAIAVLDVMMPRLNG 60 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 ++TLRRIRAKS++PV+MLTAKGDDTDRIIGLELGADDYVPKPC+PRE+ AR+RAILRR Sbjct: 61 VDTLRRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRAS 120 Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 +N + SPYSPLAVGALSMWPEQRRATW+G+PLELTSSEFNLLEVLARNAGKPVSKQHLS Sbjct: 121 AENNEQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 EQGLGRPLARFDRNIDVHLSSIRQKIA LGSDKSCIQTVYRLGYQFIKE Sbjct: 181 EQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYRLGYQFIKE 229 >ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 226 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 155/229 (67%), Positives = 183/229 (79%), Gaps = 3/229 (1%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 M +LL+DDD+EL ML++YL Q+ FE +DGESGVVEALSG YAIV LDVMMP ++G Sbjct: 1 MPHILLVDDDVELSGMLRDYLNQDGFEATAVHDGESGVVEALSGHYAIVALDVMMPGISG 60 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 +E LRRIRA SN+PVLMLTAKGDD DRI+GLELGADDYVPKPC PREL AR+RAILRRT Sbjct: 61 IEVLRRIRAVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTT 120 Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 + + P+ G L+++PEQRR W G P+++TS+EFNL+EVLARNAG+PVSK L Sbjct: 121 LVE---AASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLC 177 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 EQ LGRPLARFDR+IDVHLSSIR K+ L +SCIQTVYR GYQ IKE Sbjct: 178 EQALGRPLARFDRSIDVHLSSIRHKLGNLPDGRSCIQTVYRQGYQLIKE 226 >ref|YP_004039724.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gb|ADQ84488.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 234 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 158/229 (68%), Positives = 187/229 (81%), Gaps = 2/229 (0%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 M+KVLLIDDD+ELV MLKEYLEQE F+ VAYDGESG +AL Y +++LDVMMP++NG Sbjct: 8 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 67 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 ++ LR IRA+ N PVLMLTAKG+D DRI+GLELGADDYVPKPCTPRE+ ARVRAILRRT Sbjct: 68 IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRT- 126 Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 D++ + VGAL++WPEQRRA WSG LELTS+EFNLLEVL R+AG+ VSK LS Sbjct: 127 -QPSDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 185 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 QGLGRPLARFDR+IDVHLSSIRQKI + + IQTVYR+GYQ ++E Sbjct: 186 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 234 >ref|YP_003051026.1| winged helix family two component transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT50499.1| two component transcriptional regulator, winged helix family [Methylovorus glucosetrophus SIP3-4] Length = 227 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 158/229 (68%), Positives = 187/229 (81%), Gaps = 2/229 (0%) Query: 1 MSKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNG 60 M+KVLLIDDD+ELV MLKEYLEQE F+ VAYDGESG +AL Y +++LDVMMP++NG Sbjct: 1 MNKVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNG 60 Query: 61 LETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTV 120 ++ LR IRA+ N PVLMLTAKG+D DRI+GLELGADDYVPKPCTPRE+ ARVRAILRRT Sbjct: 61 IDALRAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRT- 119 Query: 121 IDNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLS 180 D++ + VGAL++WPEQRRA WSG LELTS+EFNLLEVL R+AG+ VSK LS Sbjct: 120 -QPSDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLS 178 Query: 181 EQGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 QGLGRPLARFDR+IDVHLSSIRQKI + + IQTVYR+GYQ ++E Sbjct: 179 LQGLGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLVRE 227 >ref|YP_003847784.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gb|ADL56020.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 234 Score = 308 bits (788), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 152/228 (66%), Positives = 183/228 (80%), Gaps = 1/228 (0%) Query: 2 SKVLLIDDDIELVDMLKEYLEQEKFEVRVAYDGESGVVEALSGQYAIVVLDVMMPRLNGL 61 +KVLL+DDD+EL ML+ YLE+E FEV+ +DGESG+ EAL G + I VLDVMMP +G+ Sbjct: 8 TKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKSGI 67 Query: 62 ETLRRIRAKSNLPVLMLTAKGDDTDRIIGLELGADDYVPKPCTPRELTARVRAILRRTVI 121 + L +IRA+ +PVLMLTA+GDD DRIIGLELGADDYVPKPCTPRELTAR+RAILRR+ Sbjct: 68 DVLVQIRAQGAMPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAILRRSSG 127 Query: 122 DNPDHSPYSPLAVGALSMWPEQRRATWSGRPLELTSSEFNLLEVLARNAGKPVSKQHLSE 181 S + +A G LS+WPEQRRA W+G+PLELTS+EFNLLEVLARNAG+ VSK LSE Sbjct: 128 AESALSSSTVIA-GVLSIWPEQRRAEWAGKPLELTSTEFNLLEVLARNAGQVVSKSELSE 186 Query: 182 QGLGRPLARFDRNIDVHLSSIRQKIATLGSDKSCIQTVYRLGYQFIKE 229 Q LGRPLARFDR+IDVHLSSIR+K+ L +S I V+ GYQFI+E Sbjct: 187 QALGRPLARFDRSIDVHLSSIRRKLEPLPDGRSRILAVFNKGYQFIRE 234