BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0058.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03825902.1| binding-protein dependent transport system in... 342 3e-92 emb|CAA63862.1| putative inner membrane protein [Bacillus lichen... 326 2e-87 ref|ZP_08003065.1| inner membrane protein [Bacillus sp. BT1B_CT2... 325 5e-87 ref|YP_090051.1| hypothetical protein BLi00400 [Bacillus licheni... 322 3e-86 ref|ZP_03054603.1| binding-protein-dependent transport systems i... 313 2e-83 >ref|ZP_03825902.1| binding-protein dependent transport system inner membrane protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 268 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 180/248 (72%), Positives = 211/248 (85%) Query: 23 AGGLVYLFLILPVLVIFLSAFSPGAYPQFPPESVSLRWFQAFFDNRAWLKALQVSAWLLL 82 AG LVY FL LPVLVI LSAFSP YPQFPP +SLRWF+A ++ W +L VS LL+ Sbjct: 19 AGILVYAFLALPVLVIVLSAFSPETYPQFPPRDISLRWFRALLEDENWRSSLGVSLLLLV 78 Query: 83 VVTPLTTLLGTTAAYALARLQFRGRDVLQAFVLSPLIIPQVVLGIALLYVLTGMGLSGSL 142 +VTPLT ++GT AA+ALARL+FR R+ LQAF+LSPL+IPQVVLGIALLYVL GL+GS+ Sbjct: 79 IVTPLTVMVGTFAAWALARLEFRYRESLQAFILSPLMIPQVVLGIALLYVLMAAGLAGSI 138 Query: 143 TGLAIGHILVALPYAVRTVSVSLASMDRRLETASMNLGATPAYTFRHVTLPLIKPGIVAG 202 TGL IGH++VALPY VRTVSVSLA+MDRRLE SM+LGA AYTFRHVTLPLIKPG++AG Sbjct: 139 TGLVIGHMVVALPYVVRTVSVSLAAMDRRLEAVSMSLGAGRAYTFRHVTLPLIKPGMLAG 198 Query: 203 AVFAAVTSFGEVSVSLFLTAPGTVTMPVRIFTYIDQTFDPVVNAVSAIFIVLAVLALVLI 262 AVFAAVTSFGEVSVSLFL+AP T+T+PVRIF Y+DQTFDP VNA+S IFI +AVL L++I Sbjct: 199 AVFAAVTSFGEVSVSLFLSAPDTITVPVRIFNYVDQTFDPTVNAISVIFIAIAVLLLIVI 258 Query: 263 ERTIGLTK 270 E+ IGLTK Sbjct: 259 EKRIGLTK 266 >emb|CAA63862.1| putative inner membrane protein [Bacillus licheniformis] Length = 270 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 163/259 (62%), Positives = 206/259 (79%), Gaps = 3/259 (1%) Query: 15 GWRWLG---RAAGGLVYLFLILPVLVIFLSAFSPGAYPQFPPESVSLRWFQAFFDNRAWL 71 G +W+ AAG LVYLFL LPV VI LSAFSP YP+FPP VSLRWF + W+ Sbjct: 10 GGKWIDVCVWAAGLLVYLFLALPVFVIILSAFSPDEYPKFPPSGVSLRWFAGVISSSGWM 69 Query: 72 KALQVSAWLLLVVTPLTTLLGTTAAYALARLQFRGRDVLQAFVLSPLIIPQVVLGIALLY 131 +++ VS LLLVVTPL +LGT AAYALARL F G+ +QAF+LSP++IPQ+ LG++ LY Sbjct: 70 ESIWVSGMLLLVVTPLAVILGTVAAYALARLNFPGKQGIQAFILSPMMIPQIALGVSFLY 129 Query: 132 VLTGMGLSGSLTGLAIGHILVALPYAVRTVSVSLASMDRRLETASMNLGATPAYTFRHVT 191 +LT +G++G+ GLA GHIL++LPY +RTV VS+A++D +LE ASMNLGA P YTF HVT Sbjct: 130 LLTMLGVNGTFAGLAAGHILISLPYVLRTVGVSMANVDPKLELASMNLGAGPWYTFFHVT 189 Query: 192 LPLIKPGIVAGAVFAAVTSFGEVSVSLFLTAPGTVTMPVRIFTYIDQTFDPVVNAVSAIF 251 LPLIKPGI+AGAVFAAVTSFGEVS+SLF+++P +PVR F+YIDQT DP VNA+S IF Sbjct: 190 LPLIKPGIIAGAVFAAVTSFGEVSISLFVSSPAVTPVPVRTFSYIDQTCDPSVNAISVIF 249 Query: 252 IVLAVLALVLIERTIGLTK 270 I ++V+AL++IERTIGL+K Sbjct: 250 ITVSVIALIIIERTIGLSK 268 >ref|ZP_08003065.1| inner membrane protein [Bacillus sp. BT1B_CT2] gb|EFV69668.1| inner membrane protein [Bacillus sp. BT1B_CT2] Length = 263 Score = 325 bits (833), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 159/259 (61%), Positives = 206/259 (79%), Gaps = 3/259 (1%) Query: 17 RWLGRA---AGGLVYLFLILPVLVIFLSAFSPGAYPQFPPESVSLRWFQAFFDNRAWLKA 73 +W+ AG LVY FL LPV VI LSAFSP YP+FPP +SLRWF F + W+++ Sbjct: 5 KWIDACVWTAGLLVYFFLALPVFVIILSAFSPDEYPKFPPSGISLRWFAGVFSSSGWMES 64 Query: 74 LQVSAWLLLVVTPLTTLLGTTAAYALARLQFRGRDVLQAFVLSPLIIPQVVLGIALLYVL 133 + VS LLLVVTPL +LGT AAYALARL F G+ +QAFVLSPL+IPQ+ LG++ LY+L Sbjct: 65 IWVSFMLLLVVTPLAVILGTVAAYALARLNFPGKQAIQAFVLSPLMIPQIALGVSFLYLL 124 Query: 134 TGMGLSGSLTGLAIGHILVALPYAVRTVSVSLASMDRRLETASMNLGATPAYTFRHVTLP 193 T +G++G+ GLA GH+L++LPY VRTV VS+A++D++LE ASMNLGA P +TF HV LP Sbjct: 125 TMIGVNGTFAGLAAGHMLISLPYVVRTVGVSMANVDQKLELASMNLGAGPWHTFFHVILP 184 Query: 194 LIKPGIVAGAVFAAVTSFGEVSVSLFLTAPGTVTMPVRIFTYIDQTFDPVVNAVSAIFIV 253 LIKPGI+AGAVFA+VTSFGE+S+SLF+++P +PVR F+YIDQTFDP V+A+S IFI Sbjct: 185 LIKPGIIAGAVFASVTSFGEISISLFVSSPAVTPVPVRTFSYIDQTFDPSVHAISVIFIT 244 Query: 254 LAVLALVLIERTIGLTKAM 272 ++V+AL++IERTIGL+K M Sbjct: 245 VSVIALIIIERTIGLSKTM 263 >ref|YP_090051.1| hypothetical protein BLi00400 [Bacillus licheniformis ATCC 14580] ref|YP_077639.2| binding-protein dependent transport system inner membrane protein [Bacillus licheniformis ATCC 14580] gb|AAU39358.1| putative protein [Bacillus licheniformis ATCC 14580] gb|AAU22001.2| Binding-protein-dependent transport systems inner membrane component [Bacillus licheniformis ATCC 14580] Length = 270 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 158/259 (61%), Positives = 205/259 (79%), Gaps = 3/259 (1%) Query: 17 RWLGRA---AGGLVYLFLILPVLVIFLSAFSPGAYPQFPPESVSLRWFQAFFDNRAWLKA 73 +W+ AG LVY FL LPV VI LSAFSP YP+FPP +SLRWF F + W+++ Sbjct: 12 KWIDACVWTAGLLVYFFLALPVFVIILSAFSPDEYPKFPPSGISLRWFAGVFSSSGWMES 71 Query: 74 LQVSAWLLLVVTPLTTLLGTTAAYALARLQFRGRDVLQAFVLSPLIIPQVVLGIALLYVL 133 + VS LLLVVT L +LGT AAYALARL F G+ +QAFVLSPL+IPQ+ LG++ LY+L Sbjct: 72 IWVSFMLLLVVTHLAVILGTVAAYALARLNFPGKQAIQAFVLSPLMIPQIALGVSFLYLL 131 Query: 134 TGMGLSGSLTGLAIGHILVALPYAVRTVSVSLASMDRRLETASMNLGATPAYTFRHVTLP 193 T +G++G+ GLA GH+L++LPY VRTV VS+A++D++LE ASMNLGA P +TF HV LP Sbjct: 132 TMIGVNGTFAGLAAGHMLISLPYVVRTVGVSMANVDQKLELASMNLGAGPWHTFFHVILP 191 Query: 194 LIKPGIVAGAVFAAVTSFGEVSVSLFLTAPGTVTMPVRIFTYIDQTFDPVVNAVSAIFIV 253 LIKPGI+AGAVFA+VTSFGE+S+SLF+++P +PVR F+YIDQTFDP V+A+S IFI Sbjct: 192 LIKPGIIAGAVFASVTSFGEISISLFVSSPAVTPVPVRTFSYIDQTFDPSVHAISVIFIT 251 Query: 254 LAVLALVLIERTIGLTKAM 272 ++V+AL++IERTIGL+K M Sbjct: 252 VSVIALIIIERTIGLSKTM 270 >ref|ZP_03054603.1| binding-protein-dependent transport systems inner membrane component [Bacillus pumilus ATCC 7061] gb|EDW21910.1| binding-protein-dependent transport systems inner membrane component [Bacillus pumilus ATCC 7061] Length = 267 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 160/250 (64%), Positives = 207/250 (82%) Query: 23 AGGLVYLFLILPVLVIFLSAFSPGAYPQFPPESVSLRWFQAFFDNRAWLKALQVSAWLLL 82 AG LVYLFL +PVLVI LSAFSP A+P+FPP S S+RWFQ N W+++L++S LL Sbjct: 18 AGSLVYLFLTIPVLVIVLSAFSPNAFPEFPPTSFSVRWFQEVVSNPEWMESLRISVILLF 77 Query: 83 VVTPLTTLLGTTAAYALARLQFRGRDVLQAFVLSPLIIPQVVLGIALLYVLTGMGLSGSL 142 +VTPLT LLGT A+YALARL F+G++ +QAF+LSPL+IPQVVLGIA+LY+ T MG +GSL Sbjct: 78 IVTPLTVLLGTMASYALARLSFKGKEAIQAFILSPLMIPQVVLGIAMLYLFTAMGFTGSL 137 Query: 143 TGLAIGHILVALPYAVRTVSVSLASMDRRLETASMNLGATPAYTFRHVTLPLIKPGIVAG 202 L IGH+++ PY VRTV VS++++D RLE ASMNLGA P TF VTLPLIKPGI+AG Sbjct: 138 WALVIGHVIIGFPYVVRTVGVSVSNLDPRLELASMNLGAGPIRTFFRVTLPLIKPGIIAG 197 Query: 203 AVFAAVTSFGEVSVSLFLTAPGTVTMPVRIFTYIDQTFDPVVNAVSAIFIVLAVLALVLI 262 VF+AVTSFGE+S+SLF+++P T+T+PVR F YI+QTFDP VNA+S IFI+++++AL++I Sbjct: 198 GVFSAVTSFGEISISLFVSSPQTITIPVRTFNYIEQTFDPSVNAISVIFIIISIIALLII 257 Query: 263 ERTIGLTKAM 272 E+TIGL+K M Sbjct: 258 EKTIGLSKVM 267