BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0048.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001414277.1| MlrC domain-containing protein [Parvibaculum...    96   2e-18
ref|YP_001632655.1| hypothetical protein Bpet4039 [Bordetella pe...    89   3e-16
ref|ZP_06689999.1| MlrC domain protein [Achromobacter piechaudii...    88   4e-16
ref|YP_785035.1| hypothetical protein BAV0502 [Bordetella avium ...    83   1e-14
ref|ZP_08402785.1| putative MlrC family protein [Rubrivivax benz...    82   2e-14

>ref|YP_001414277.1| MlrC domain-containing protein [Parvibaculum lavamentivorans DS-1]
 gb|ABS64620.1| MlrC domain protein [Parvibaculum lavamentivorans DS-1]
          Length = 515

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 60/95 (63%), Gaps = 6/95 (6%)

Query: 1   MRIAIGGFQHETNTFSRTPTTWTDFATADTWPGLLEGDALLPEMSAAPGSAPSNIPMAGF 60
           MRIA+GGFQHETNTF+ +   +  FA AD+WP L  G+ALL   +        N+P+AGF
Sbjct: 12  MRIAVGGFQHETNTFAPSKADYAAFAQADSWPALQRGEALLSAFTGM------NVPVAGF 65

Query: 61  IAAARQTPHTLVPTVWCAAGPSGRVTRDXRRNPAA 95
           I AA  + H LVP VWC+A PS +VT D     AA
Sbjct: 66  IDAASASGHRLVPLVWCSATPSAQVTEDAFERIAA 100


>ref|YP_001632655.1| hypothetical protein Bpet4039 [Bordetella petrii DSM 12804]
 emb|CAP44387.1| conserved hypothetical protein [Bordetella petrii]
          Length = 503

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 58/89 (65%), Gaps = 9/89 (10%)

Query: 1  MRIAIGGFQHETNTFSRTPTTWTDFA-TADTWPGLLEGDALLPEMSAAPGSAPSNIPMAG 59
          MRI IGGFQHETNTF+ +  TW +FA     WP L+ G A+   ++ A      NIP+AG
Sbjct: 1  MRIGIGGFQHETNTFAPSRATWEEFADKGGGWPKLVSGPAMFEAVAGA------NIPIAG 54

Query: 60 FIAAARQTPHTLVPTVWCAAGPSGRVTRD 88
          FI A R+  HTLVPT W AA PSG VTRD
Sbjct: 55 FIDAMRE--HTLVPTTWAAASPSGHVTRD 81


>ref|ZP_06689999.1| MlrC domain protein [Achromobacter piechaudii ATCC 43553]
 gb|EFF73101.1| MlrC domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 502

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 57/89 (64%), Gaps = 9/89 (10%)

Query: 1  MRIAIGGFQHETNTFSRTPTTWTDFA-TADTWPGLLEGDALLPEMSAAPGSAPSNIPMAG 59
          MRI IGGFQHET TF+ +  TW DFA     WP L+ G A+ P ++ A      NIP+AG
Sbjct: 1  MRIGIGGFQHETTTFAPSRATWEDFAEKGGGWPKLVSGPAMFPAVAGA------NIPVAG 54

Query: 60 FIAAARQTPHTLVPTVWCAAGPSGRVTRD 88
          FI A  Q  HTLVPT W AA PSG VT+D
Sbjct: 55 FIEAMSQ--HTLVPTTWAAASPSGLVTKD 81


>ref|YP_785035.1| hypothetical protein BAV0502 [Bordetella avium 197N]
 emb|CAJ48107.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 501

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 56/89 (62%), Gaps = 9/89 (10%)

Query: 1  MRIAIGGFQHETNTFSRTPTTWTDFA-TADTWPGLLEGDALLPEMSAAPGSAPSNIPMAG 59
          MRI IGGFQHETNTF+ +   W DFA     WP L+ G A+   ++ A      NIP+AG
Sbjct: 1  MRIGIGGFQHETNTFAPSKAAWEDFADKGGGWPRLVSGPAMFAAVAGA------NIPIAG 54

Query: 60 FIAAARQTPHTLVPTVWCAAGPSGRVTRD 88
          FI A   + HTL+PT W AA PSG VTRD
Sbjct: 55 FIEA--MSGHTLLPTTWAAASPSGPVTRD 81


>ref|ZP_08402785.1| putative MlrC family protein [Rubrivivax benzoatilyticus JA2]
 gb|EGJ11118.1| putative MlrC family protein [Rubrivivax benzoatilyticus JA2]
          Length = 498

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 1   MRIAIGGFQHETNTFSRTPTTWTDFATADTWPGLLEGDALLPEMSAAPGSAPSNIPMAGF 60
           MR+ + GFQHETNTF+ T   W  F   D +P    G+A+L  +      AP+++PMAGF
Sbjct: 1   MRVLVAGFQHETNTFAPTKAGWPAFLAGDAFPEFTRGEAMLERL------APTSLPMAGF 54

Query: 61  IAAARQTPHTLVPTVWCAAGPSGRVTRDXRRNPAARARGD 100
           IA AR+   TL+P++W  A PS +VT D     AA    D
Sbjct: 55  IADARERGWTLLPSIWAGASPSAQVTHDAFERLAAMLLDD 94