BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0047.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_785035.1| hypothetical protein BAV0502 [Bordetella avium ... 207 1e-51 gb|EFV85843.1| hypothetical protein HMPREF0005_01457 [Achromobac... 206 2e-51 gb|EGP47434.1| MlrC family protein 7 [Achromobacter xylosoxidans... 202 3e-50 ref|NP_772241.1| hypothetical protein blr5601 [Bradyrhizobium ja... 199 3e-49 ref|YP_001632655.1| hypothetical protein Bpet4039 [Bordetella pe... 196 2e-48 >ref|YP_785035.1| hypothetical protein BAV0502 [Bordetella avium 197N] emb|CAJ48107.1| conserved hypothetical protein [Bordetella avium 197N] Length = 501 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/253 (48%), Positives = 148/253 (58%), Gaps = 24/253 (9%) Query: 1 VIGEDVPIVASLDLHANVSQKMIGHADVLVAYRTYPHVDMAATGARAFNWIERRLAGAPR 60 +IG DVP+VASLDLHANV++ MI HAD L+ YRTYPHVDMA TGAR ++++RL G PR Sbjct: 130 LIGPDVPLVASLDLHANVTRAMIRHADGLICYRTYPHVDMAETGARTAQFLQKRLDGMPR 189 Query: 61 AHVAWLRAPYLIPMCWQCTDDAPARDLYALLDHVNAAGKDSASFTMGFPAADVEKCGPAV 120 +VA P+LI +CWQ TD PAR LY LL + S SF GFPAAD +C PAV Sbjct: 190 PYVALRSLPFLISLCWQSTDIEPARSLYRLLGDIEDRSALSLSFATGFPAADFPECAPAV 249 Query: 121 WAYGASAQSARDAAQSLLDAVNAAETQFNGEIFSAQDAVTRAITIARHNGGPVXAAR--- 177 WAYG S +A AA + AV AE F G I+ AV A+ IA PV A Sbjct: 250 WAYGESQSAADAAADEMTRAVLNAEEDFGGPIYDPDQAVQEAMRIAADAMRPVVIADVQD 309 Query: 178 ---------------------ANNAVLGLLVDPQAAQLVHAAGTGVHLNLSLGGKSGIAG 216 A +A +GL+VDP AA H AG G + L+LGG SGI G Sbjct: 310 NPGAGGSSDTTGILRALIRHGARHAAIGLIVDPAAAMAAHRAGVGNTVRLALGGHSGIPG 369 Query: 217 DSPLEAEFLVERL 229 D PL A+FLVE++ Sbjct: 370 DEPLSADFLVEKI 382 >gb|EFV85843.1| hypothetical protein HMPREF0005_01457 [Achromobacter xylosoxidans C54] Length = 501 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/252 (49%), Positives = 154/252 (61%), Gaps = 24/252 (9%) Query: 1 VIGEDVPIVASLDLHANVSQKMIGHADVLVAYRTYPHVDMAATGARAFNWIERRLAGAPR 60 ++G DVP+VASLDLHAN++ M+ HAD LV YRTYPH+DMA TG RA + RRLAGAPR Sbjct: 130 LVGPDVPVVASLDLHANMTAAMVRHADALVCYRTYPHIDMAETGQRAAALLARRLAGAPR 189 Query: 61 AHVAWLRAPYLIPMCWQCTDDAPARDLYALLDHVNAAGKDSASFTMGFPAADVEKCGPAV 120 VA + PYLIP+CWQ TD PAR LY ++ + A G S S GFPAAD C PAV Sbjct: 190 PCVALRQLPYLIPLCWQSTDIEPARSLYQMVGDIEARGAQSVSLATGFPAADFPDCLPAV 249 Query: 121 WAYGASAQSARDAAQSLLDAVNAAETQFNGEIFSAQDAVTRAITIARHNGGPVXAA---- 176 WAYGA+ A AA +L AV AE F G ++S DAVT A+ +AR PV A Sbjct: 250 WAYGATQAEADAAADTLARAVLDAERDFGGTLYSPDDAVTTAMRLAREANAPVVIADAQD 309 Query: 177 --------------------RANNAVLGLLVDPQAAQLVHAAGTGVHLNLSLGGKSGIAG 216 +A +A +GL+VDP+AA H AG G + ++LGG SGI Sbjct: 310 NPGAGGSSDTTGLLRALIRHQARDAAIGLIVDPEAALAAHRAGVGKSVRIALGGHSGIPD 369 Query: 217 DSPLEAEFLVER 228 D PL+AEF+VE+ Sbjct: 370 DEPLDAEFIVEK 381 >gb|EGP47434.1| MlrC family protein 7 [Achromobacter xylosoxidans AXX-A] Length = 501 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/252 (48%), Positives = 152/252 (60%), Gaps = 24/252 (9%) Query: 1 VIGEDVPIVASLDLHANVSQKMIGHADVLVAYRTYPHVDMAATGARAFNWIERRLAGAPR 60 ++G DVP+VASLDLHAN++ M+ HAD LV YRTYPH+DMA TG RA + RRLAGAPR Sbjct: 130 LVGPDVPVVASLDLHANMTPAMVRHADALVCYRTYPHIDMAETGQRAAALLARRLAGAPR 189 Query: 61 AHVAWLRAPYLIPMCWQCTDDAPARDLYALLDHVNAAGKDSASFTMGFPAADVEKCGPAV 120 VA + PYLIP+CWQ TD PAR LY ++ + A G S S GFPAAD C PAV Sbjct: 190 PCVALRQLPYLIPLCWQSTDIEPARSLYQMVGDIEARGAHSVSLATGFPAADFPDCLPAV 249 Query: 121 WAYGASAQSARDAAQSLLDAVNAAETQFNGEIFSAQDAVTRAITIARHNGGPVXAARAN- 179 WAYGA+ A AA +L AV AE F G + + DAVT A+ +AR PV A A Sbjct: 250 WAYGATQAEADAAADTLARAVLDAERDFGGTLHTPDDAVTTALRLAREASAPVVIADAQD 309 Query: 180 -----------------------NAVLGLLVDPQAAQLVHAAGTGVHLNLSLGGKSGIAG 216 +A +GL+VDP+AA H AG G + ++LGG SGI Sbjct: 310 NPGAGGSSDTTGLLRALIRHQVRDAAIGLIVDPEAALAAHRAGVGKTVRIALGGHSGIPD 369 Query: 217 DSPLEAEFLVER 228 D PL+AEF+VE+ Sbjct: 370 DEPLDAEFIVEK 381 >ref|NP_772241.1| hypothetical protein blr5601 [Bradyrhizobium japonicum USDA 110] dbj|BAC50866.1| blr5601 [Bradyrhizobium japonicum USDA 110] Length = 501 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 108/252 (42%), Positives = 146/252 (57%), Gaps = 23/252 (9%) Query: 1 VIGEDVPIVASLDLHANVSQKMIGHADVLVAYRTYPHVDMAATGARAFNWIERRLAGAPR 60 VIGEDVP+VASLDLHANV+ MIGHAD L+AYRTYPHVDMA TG + + L R Sbjct: 132 VIGEDVPLVASLDLHANVTPAMIGHADALIAYRTYPHVDMAETGRASARHLALLLKTKQR 191 Query: 61 AHVAWLRAPYLIPMCWQCTDDAPARDLYALLDHVNAAGKDSASFTMGFPAADVEKCGPAV 120 A+ + P+LIP+ WQCT+D P + +Y L + + G + SF GFPAAD CGP+V Sbjct: 192 FAKAFRQLPFLIPISWQCTNDQPTKGIYEKLAALESDGVPTLSFAPGFPAADFRDCGPSV 251 Query: 121 WAYGASAQSARDAAQSLLDAVNAAETQFNGEIFSAQDAVTRAITIARHNGGPVXAARANN 180 +AYG + A AA +++ + + E F+G+I+S D V A+ +A+ P+ A + Sbjct: 252 FAYGKTQADADRAADAIVKLIESHEDDFDGKIWSPDDGVRHAMELAKGASKPIIIADTQD 311 Query: 181 -----------------------AVLGLLVDPQAAQLVHAAGTGVHLNLSLGGKSGIAGD 217 A G + DP++A+ HAAG G + LSLGGKSGI GD Sbjct: 312 NPGAGGDSDTTGMLRALVRNKASAATGAIYDPESAKAAHAAGVGATVTLSLGGKSGIPGD 371 Query: 218 SPLEAEFLVERL 229 P F+VE+L Sbjct: 372 EPYRETFVVEKL 383 >ref|YP_001632655.1| hypothetical protein Bpet4039 [Bordetella petrii DSM 12804] emb|CAP44387.1| conserved hypothetical protein [Bordetella petrii] Length = 503 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 117/254 (46%), Positives = 148/254 (58%), Gaps = 25/254 (9%) Query: 1 VIGEDVPIVASLDLHANVSQKMIGHADVLVAYRTYPHVDMAATGARAFNWIERRLAGAPR 60 ++G +PIVASLDLHANV++ M+ HAD LV YRTYPH+DMA TG RA ++RRL G PR Sbjct: 130 LVGPSLPIVASLDLHANVTRTMVAHADSLVCYRTYPHIDMADTGMRAAQLLDRRLHGMPR 189 Query: 61 AHVAWLRAPYLIPMCWQCTDDAPARDLYALLDHVNAAGK-DSASFTMGFPAADVEKCGPA 119 +VA PYLI +CWQ TD PAR LY LL+ + S SF GFPAAD +C P Sbjct: 190 PYVALRSIPYLISLCWQSTDIEPARSLYKLLEDLETRETVISLSFATGFPAADFPECAPT 249 Query: 120 VWAYGASAQSARDAAQSLLDAVNAAETQFNGEIFSAQDAVTRAITIARHNGGPVXAA--- 176 VWAY + A A ++ AV AE F G+I + +AV A+ +AR + PV A Sbjct: 250 VWAYSDTQADADATADAMARAVLNAEADFGGKIHTPDEAVQTAMAMARDSTKPVIIADVQ 309 Query: 177 ---------------------RANNAVLGLLVDPQAAQLVHAAGTGVHLNLSLGGKSGIA 215 RA +A LGL+VDP AA AG G + ++LGG SGI Sbjct: 310 DNPGAGGSSDTTGILRALLRHRATDAALGLIVDPAAALAARRAGAGNTVRIALGGHSGIP 369 Query: 216 GDSPLEAEFLVERL 229 D PLEA+FLVE++ Sbjct: 370 DDEPLEADFLVEKI 383