BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0042.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004752007.1| putative activity regulator of membrane prot...   154   5e-36
ref|YP_001099653.1| hypothetical protein HEAR1353 [Herminiimonas...   149   2e-34
ref|NP_969472.1| hypothetical protein Bd2674 [Bdellovibrio bacte...   144   9e-33
ref|YP_003775603.1| transmembrane protein [Herbaspirillum serope...   137   1e-30
ref|YP_583606.1| hypothetical protein Rmet_1454 [Cupriavidus met...   132   2e-29

>ref|YP_004752007.1| putative activity regulator of membrane protease YbbK [Collimonas
           fungivorans Ter331]
 gb|AEK61184.1| Putative activity regulator of membrane protease YbbK [Collimonas
           fungivorans Ter331]
          Length = 150

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/150 (56%), Positives = 105/150 (70%), Gaps = 2/150 (1%)

Query: 48  MMDWAIWFVAAGVAIGVELFTGTFYLLMIAIGLGAGGVAALLGGKLEWQLLLAAAIGFAA 107
           M  W +W +AAG+ + +ELFT T YLLM+AIGL  GGVAAL+G  +EWQLL+AA +   A
Sbjct: 1   MAGWVMWMLAAGLLVVMELFTTTLYLLMVAIGLAVGGVAALIGWGVEWQLLVAAVVALVA 60

Query: 108 IGALRRSRFGRRHENDAGRDPNVNLDIGQSVSVDHWNDLDGT--HTARIRYRGAEWDVEL 165
              LRRS+FGRR +  A RDPNVNLDIGQS++V+ W    G   +TAR++YRGA WDVEL
Sbjct: 61  TYLLRRSKFGRRTKVQAERDPNVNLDIGQSITVEQWQQDAGAAGYTARVKYRGAMWDVEL 120

Query: 166 AAGSPVQAGQFIIREVRGSRLIVSHQASQH 195
           A  +    G F I E+RGSRLIV +   QH
Sbjct: 121 APTANADGGLFFIHEIRGSRLIVGNSPGQH 150


>ref|YP_001099653.1| hypothetical protein HEAR1353 [Herminiimonas arsenicoxydans]
 emb|CAL61526.1| Conserved hypothetical protein; putative membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 150

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 97/142 (68%), Gaps = 1/142 (0%)

Query: 48  MMDWAIWFVAAGVAIGVELFTGTFYLLMIAIGLGAGGVAALLGGKLEWQLLLAAAIGFAA 107
           M DW IWF  A V I +E+ TGTFYLLMIAIG   GG+ AL G    WQ +LAA I   A
Sbjct: 1   MTDWMIWFAVACVLIILEMATGTFYLLMIAIGAITGGIVALSGASGTWQCILAAVIAAVA 60

Query: 108 IGALRRSRFGRRHENDAGRDPNVNLDIGQSVSVDHWNDLDGTH-TARIRYRGAEWDVELA 166
             ALRRSRFGR    DA RDP+VNLDIGQ++ V  W  + G   TAR+ YRGA WDVELA
Sbjct: 61  TFALRRSRFGRTENPDASRDPDVNLDIGQTLEVAEWRTVSGAKSTARVMYRGAPWDVELA 120

Query: 167 AGSPVQAGQFIIREVRGSRLIV 188
           +G    AGQF I+EV+G+RLIV
Sbjct: 121 SGGTAVAGQFRIQEVQGNRLIV 142


>ref|NP_969472.1| hypothetical protein Bd2674 [Bdellovibrio bacteriovorus HD100]
 emb|CAE80465.1| putative membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 140

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 97/143 (67%), Gaps = 4/143 (2%)

Query: 48  MMDWAIWFVAAGVAIGVELFTGTFYLLMIAIGLGAGGVAALLGGKLEWQLLLAAAIGFAA 107
           M  W +WFV AG+ +G+EL TGTFYL++I+IG+ A G++ALLG  +  Q ++AA I    
Sbjct: 1   METWIMWFVLAGLVLGLELLTGTFYLVVISIGMAAAGISALLGANVSLQAIIAAVIWVVC 60

Query: 108 IGALRRSRFGRRHENDAGRDPNVNLDIGQSVSVDHWNDLDGTHTARIRYRGAEWDVELAA 167
              LR+SRFG+     +  DPNVN+DIGQ++ VD W+     +TAR  YRGA WDVEL +
Sbjct: 61  TLILRKSRFGKPRHVQSESDPNVNIDIGQTIKVDAWSS---ENTARATYRGAMWDVELIS 117

Query: 168 GSPVQAGQFIIREVRGSRLIVSH 190
           G    AG F+IREVRG+RL V+ 
Sbjct: 118 GEA-SAGTFVIREVRGNRLFVAK 139


>ref|YP_003775603.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63695.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/142 (55%), Positives = 100/142 (70%)

Query: 48  MMDWAIWFVAAGVAIGVELFTGTFYLLMIAIGLGAGGVAALLGGKLEWQLLLAAAIGFAA 107
           M DWAIW V AG  +G ELFTGTFYLLMIA+GL AG VAA  G  LEWQLL+AA +G AA
Sbjct: 2   MTDWAIWLVLAGGLLGAELFTGTFYLLMIALGLVAGAVAAWCGLVLEWQLLVAAVVGVAA 61

Query: 108 IGALRRSRFGRRHENDAGRDPNVNLDIGQSVSVDHWNDLDGTHTARIRYRGAEWDVELAA 167
           +  LR S +GR  ++++  DP++ LDIGQS+ V  W      + AR+ YRGA+WDVEL  
Sbjct: 62  VLGLRSSPYGRLRQSNSNDDPSLLLDIGQSIEVTAWQAHGTQYLARVPYRGAQWDVELLP 121

Query: 168 GSPVQAGQFIIREVRGSRLIVS 189
           G     G ++IRE+RGSRL+V+
Sbjct: 122 GHHALPGSYVIREIRGSRLLVA 143


>ref|YP_583606.1| hypothetical protein Rmet_1454 [Cupriavidus metallidurans CH34]
 gb|ABF08337.1| conserved hypothetical protein; putative exported protein
           [Cupriavidus metallidurans CH34]
          Length = 144

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/146 (48%), Positives = 94/146 (64%), Gaps = 3/146 (2%)

Query: 48  MMDWAIWFVAAGVAIGVELFTGTFYLLMIAIGLGAGGVAALLGGKLEWQLLLAAAIGFAA 107
           M  + +WF  A V +  EL TGTFYLLMIA+G+ AGGVAALLG     Q + AA +    
Sbjct: 1   MTSYYLWFAVAVVLVIAELATGTFYLLMIALGVAAGGVAALLGADEPIQTVAAALVAIIG 60

Query: 108 IGALRRSRFGRRHENDAGRDPNVNLDIGQSVSVDHWNDLDGTHTARIRYRGAEWDVELAA 167
           I  LRR+RFG+    DA  +P+VNLDIGQ + V  W+D   +  AR+ YRGA+W VELA 
Sbjct: 61  IVLLRRTRFGKLRRRDAASNPDVNLDIGQELEVPAWDD---SRRARVPYRGADWTVELAP 117

Query: 168 GSPVQAGQFIIREVRGSRLIVSHQAS 193
           G+  + G++ I EVRG+ LIV+   +
Sbjct: 118 GAEPKPGRYRIVEVRGATLIVARHYT 143