BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0037.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum ser... 341 5e-92 ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Mars... 326 1e-87 ref|YP_004752000.1| ribonuclease HII [Collimonas fungivorans Ter... 323 1e-86 ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxyda... 315 2e-84 ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium ... 309 2e-82 >ref|YP_003775599.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] gb|ADJ63691.1| ribonuclease HII protein [Herbaspirillum seropedicae SmR1] Length = 210 Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 163/197 (82%), Positives = 182/197 (92%) Query: 10 SLFAFDNYVGEIICGVDEAGRGPLAGPVFAAAVILDPARPIVGLRDSKKLSEASRDALAL 69 +L FD+Y GEIICGVDEAGRGPLAGPVFAAAVILDPARP+ GLRDSKKL+EA+RD+LAL Sbjct: 8 TLALFDDYTGEIICGVDEAGRGPLAGPVFAAAVILDPARPVKGLRDSKKLTEAARDSLAL 67 Query: 70 EIKDRAIAWAIAECSENEIDQLNILHASMLAMRRAVEALETIPTLALIDGNRCPVMTIRS 129 EIK A+AWA+A C+E EID+LNILHASMLAMRRAVEAL T+PTLALIDGNRCPVM+IRS Sbjct: 68 EIKASALAWAVASCNEQEIDELNILHASMLAMRRAVEALSTLPTLALIDGNRCPVMSIRS 127 Query: 130 EAIIKGDDKVPAISAASILAKTARDAALLVLHAQYPNYAFDQHKGYPTALHLERLQLHGV 189 EAI+KGDDKVPAISAASILAKTARDAAL+VLH YP+Y FD+HKGYPT LHLE L+LHGV Sbjct: 128 EAIVKGDDKVPAISAASILAKTARDAALMVLHDTYPHYGFDRHKGYPTPLHLEMLRLHGV 187 Query: 190 SPVHRKSYAPVRALLNA 206 SPVHR+SYAPV+ALL A Sbjct: 188 SPVHRRSYAPVKALLTA 204 >ref|YP_001353734.1| ribonuclease HII [Janthinobacterium sp. Marseille] sp|A6SZN7.1|RNH2_JANMA RecName: Full=Ribonuclease HII; Short=RNase HII gb|ABR89222.1| ribonuclease HII [Janthinobacterium sp. Marseille] Length = 210 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 161/204 (78%), Positives = 179/204 (87%), Gaps = 2/204 (0%) Query: 3 KKQDLNLSLFAFDNYVGEIICGVDEAGRGPLAGPVFAAAVILDPARPIVGLRDSKKLSEA 62 KK+D NLSLF+F + +IICGVDEAGRGPLAGPVFAAAVILDP RPI GLRDSKKL+E Sbjct: 2 KKEDPNLSLFSFLDE--DIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLRDSKKLTEV 59 Query: 63 SRDALALEIKDRAIAWAIAECSENEIDQLNILHASMLAMRRAVEALETIPTLALIDGNRC 122 RDALA+EIK A++W+IA+CSE EID LNIL A+MLAMRRA+E L +PTLALIDGNRC Sbjct: 60 KRDALAIEIKQYALSWSIAQCSEEEIDSLNILQATMLAMRRAIEGLHVVPTLALIDGNRC 119 Query: 123 PVMTIRSEAIIKGDDKVPAISAASILAKTARDAALLVLHAQYPNYAFDQHKGYPTALHLE 182 PV ++RSEAIIKGDDKV AISAASILAKTARD AL +LH QYP+YAFDQHKGYPTALHLE Sbjct: 120 PVTSVRSEAIIKGDDKVQAISAASILAKTARDHALGLLHIQYPHYAFDQHKGYPTALHLE 179 Query: 183 RLQLHGVSPVHRKSYAPVRALLNA 206 RL+ HGVSPVHRKSYAPVRALL Sbjct: 180 RLREHGVSPVHRKSYAPVRALLGG 203 >ref|YP_004752000.1| ribonuclease HII [Collimonas fungivorans Ter331] gb|AEK61177.1| Ribonuclease HII [Collimonas fungivorans Ter331] Length = 209 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 160/202 (79%), Positives = 175/202 (86%), Gaps = 3/202 (1%) Query: 3 KKQDLNLSLFAFDNYVGEIICGVDEAGRGPLAGPVFAAAVILDPARPIVGLRDSKKLSEA 62 K D N SLF +D GE ICGVDEAGRGPLAGPVFAAAVILDPARP+ GLRDSKKL+ Sbjct: 2 KLSDPNFSLFTYD---GETICGVDEAGRGPLAGPVFAAAVILDPARPVSGLRDSKKLTAE 58 Query: 63 SRDALALEIKDRAIAWAIAECSENEIDQLNILHASMLAMRRAVEALETIPTLALIDGNRC 122 R+ LA +IK A+AWAIAECSE EID LNIL A+MLAMRRAVE L +PTLALIDGNRC Sbjct: 59 RRELLAGQIKANALAWAIAECSEVEIDTLNILQATMLAMRRAVEGLSMLPTLALIDGNRC 118 Query: 123 PVMTIRSEAIIKGDDKVPAISAASILAKTARDAALLVLHAQYPNYAFDQHKGYPTALHLE 182 P ++IRSEAI+KGDDKV AISAASILAKTARDAAL +LH QYP+YAFDQHKGYPTALH+E Sbjct: 119 PQLSIRSEAIVKGDDKVQAISAASILAKTARDAALQLLHEQYPHYAFDQHKGYPTALHME 178 Query: 183 RLQLHGVSPVHRKSYAPVRALL 204 RL+LHGVSPVHRKSYAPVRALL Sbjct: 179 RLRLHGVSPVHRKSYAPVRALL 200 >ref|YP_001099649.1| ribonuclease HII [Herminiimonas arsenicoxydans] sp|A4G4T5.1|RNH2_HERAR RecName: Full=Ribonuclease HII; Short=RNase HII emb|CAL61522.1| Ribonuclease HII (RNase HII) [Herminiimonas arsenicoxydans] Length = 211 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 160/205 (78%), Positives = 176/205 (85%), Gaps = 2/205 (0%) Query: 1 MAKKQDLNLSLFAFDNYVGEIICGVDEAGRGPLAGPVFAAAVILDPARPIVGLRDSKKLS 60 MA K D NLSLF+ + +IICGVDEAGRGPLAGPVFAAAVILDP RPI GL DSKKLS Sbjct: 1 MAIKTDTNLSLFS--SLDEDIICGVDEAGRGPLAGPVFAAAVILDPMRPIDGLCDSKKLS 58 Query: 61 EASRDALALEIKDRAIAWAIAECSENEIDQLNILHASMLAMRRAVEALETIPTLALIDGN 120 E RDALA++IK A++W+IA+CSE EID LNIL A+MLAMRRAVE L PTLALIDGN Sbjct: 59 EVRRDALAIDIKAHALSWSIAQCSEQEIDSLNILQATMLAMRRAVEGLHIQPTLALIDGN 118 Query: 121 RCPVMTIRSEAIIKGDDKVPAISAASILAKTARDAALLVLHAQYPNYAFDQHKGYPTALH 180 RCPVM +R+EAIIKGDDKV AISAASILAKTARD AL +LH YP+YAFDQHKGYPTALH Sbjct: 119 RCPVMVVRAEAIIKGDDKVQAISAASILAKTARDHALGLLHIAYPHYAFDQHKGYPTALH 178 Query: 181 LERLQLHGVSPVHRKSYAPVRALLN 205 LERL+ HGVSPVHRKSYAPVRALL+ Sbjct: 179 LERLREHGVSPVHRKSYAPVRALLD 203 >ref|ZP_08275683.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] gb|EGF30849.1| Ribonuclease HII [Oxalobacteraceae bacterium IMCC9480] Length = 188 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 151/186 (81%), Positives = 168/186 (90%) Query: 22 ICGVDEAGRGPLAGPVFAAAVILDPARPIVGLRDSKKLSEASRDALALEIKDRAIAWAIA 81 +CGVDEAGRGPLAGPVFAAAVILDPA PI GLRDSKKL+EA RDALA+EIK A+AW+IA Sbjct: 1 MCGVDEAGRGPLAGPVFAAAVILDPAHPIAGLRDSKKLTEARRDALAIEIKAHALAWSIA 60 Query: 82 ECSENEIDQLNILHASMLAMRRAVEALETIPTLALIDGNRCPVMTIRSEAIIKGDDKVPA 141 ECS +EID +NIL AS+LAM+RAV+ L T PTLALIDGNRCPVMT+RS AI+ GDDKV A Sbjct: 61 ECSHHEIDAINILQASLLAMKRAVDTLPTTPTLALIDGNRCPVMTVRSIAIVGGDDKVDA 120 Query: 142 ISAASILAKTARDAALLVLHAQYPNYAFDQHKGYPTALHLERLQLHGVSPVHRKSYAPVR 201 ISAASILAKTARDAAL+VLHA YP+YAFD+HKGYPTALHLERL+LHGVSPVHR+SYAPVR Sbjct: 121 ISAASILAKTARDAALVVLHADYPDYAFDRHKGYPTALHLERLRLHGVSPVHRRSYAPVR 180 Query: 202 ALLNAG 207 LL G Sbjct: 181 RLLQEG 186