BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0030.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001771482.1| non-specific serine/threonine protein kinase... 279 2e-73 ref|YP_002961268.1| hypothetical protein MexAM1_META1p0018 [meth... 270 7e-71 ref|YP_002418918.1| circadian clock protein KaiC [Methylobacteri... 270 8e-71 ref|YP_001922862.1| circadian clock protein, KaiC [Methylobacter... 270 1e-70 ref|YP_001637519.1| non-specific serine/threonine protein kinase... 269 2e-70 >ref|YP_001771482.1| non-specific serine/threonine protein kinase [Methylobacterium sp. 4-46] gb|ACA19048.1| Non-specific serine/threonine protein kinase [Methylobacterium sp. 4-46] Length = 507 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 126/201 (62%), Positives = 167/201 (83%), Gaps = 1/201 (0%) Query: 3 RGERAAYYLFDEGRGTLMSRARALGMDVEPYIADGSLKLHSVNPAEMSPGEFTSTVRNAV 62 RGE+A YYLFDEG TL++R+ LGMD+ P+I G L + ++PAE+SPGEF+S R AV Sbjct: 301 RGEKATYYLFDEGLATLLARSAMLGMDLAPHIEAGRLTITQIDPAELSPGEFSSMTRQAV 360 Query: 63 ENEGRSFAVIDSLNAYMQSMPGEKFLLLQMHEMLSYLSQQGVTTLLVLGQHGLVGEIRSD 122 E G +F V+DSLNAY+ +MPGE+FL+LQMHE+LSYL+QQG+TTLLVLGQHG+VGE+R+D Sbjct: 361 EERGSTFVVVDSLNAYLHAMPGEEFLILQMHELLSYLNQQGITTLLVLGQHGVVGEVRTD 420 Query: 123 IDLSYLSDTILLFRFFEARGDIATAVSVVKSRISNHPRSIHEFRLSPSQGLQIGEALQDF 182 +DLSYLSD ILLFRFFEA+G++ TA+SVVKSR++ H R+I E +LS G+Q+G AL DF Sbjct: 421 VDLSYLSDCILLFRFFEAKGEVRTALSVVKSRVNAHERTIREMKLS-GHGIQVGRALTDF 479 Query: 183 EGIMSGLPTYRGRTPIMATDA 203 EG+++GLP+YRGR P++ +A Sbjct: 480 EGVLTGLPSYRGRVPMLTGEA 500 >ref|YP_002961268.1| hypothetical protein MexAM1_META1p0018 [methylobacterium extorquens AM1] gb|ACS37991.1| conserved hypothetical protein with ATP-binding domain [Methylobacterium extorquens AM1] Length = 508 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 125/197 (63%), Positives = 161/197 (81%), Gaps = 1/197 (0%) Query: 3 RGERAAYYLFDEGRGTLMSRARALGMDVEPYIADGSLKLHSVNPAEMSPGEFTSTVRNAV 62 RGE A YYLFDEG T+++RA LGMD+ P++ G L + ++PAE+SPGEF S VR AV Sbjct: 303 RGETATYYLFDEGLATMIARATLLGMDLRPHLGTGRLTIMQIDPAELSPGEFASIVRQAV 362 Query: 63 ENEGRSFAVIDSLNAYMQSMPGEKFLLLQMHEMLSYLSQQGVTTLLVLGQHGLVGEIRSD 122 E G +F +DSLNAY+ +MPGE+ L+LQMHE+LSYL+Q+GVTTLLVLGQHG++GE+R+D Sbjct: 363 EERGSTFVAVDSLNAYLHAMPGEEHLILQMHELLSYLNQKGVTTLLVLGQHGVIGEVRTD 422 Query: 123 IDLSYLSDTILLFRFFEARGDIATAVSVVKSRISNHPRSIHEFRLSPSQGLQIGEALQDF 182 IDLSYLSD ILLFRFFEA G+I TA+SVVKSR++ H R+I E RLS + GL++GEAL DF Sbjct: 423 IDLSYLSDCILLFRFFEASGEIRTALSVVKSRVNPHERTIRELRLS-TDGLRVGEALSDF 481 Query: 183 EGIMSGLPTYRGRTPIM 199 EG+++GLP YRGR ++ Sbjct: 482 EGVLTGLPAYRGRVEML 498 >ref|YP_002418918.1| circadian clock protein KaiC [Methylobacterium chloromethanicum CM4] gb|ACK80990.1| putative circadian clock protein, KaiC [Methylobacterium chloromethanicum CM4] Length = 520 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 125/197 (63%), Positives = 161/197 (81%), Gaps = 1/197 (0%) Query: 3 RGERAAYYLFDEGRGTLMSRARALGMDVEPYIADGSLKLHSVNPAEMSPGEFTSTVRNAV 62 RGE A YYLFDEG T+++RA LGMD+ P++ G L + ++PAE+SPGEF S VR AV Sbjct: 315 RGETATYYLFDEGLATMIARATLLGMDLRPHLGTGRLTIMQIDPAELSPGEFASIVRQAV 374 Query: 63 ENEGRSFAVIDSLNAYMQSMPGEKFLLLQMHEMLSYLSQQGVTTLLVLGQHGLVGEIRSD 122 E G +F +DSLNAY+ +MPGE+ L+LQMHE+LSYL+Q+GVTTLLVLGQHG++GE+R+D Sbjct: 375 EERGSTFVAVDSLNAYLHAMPGEEHLILQMHELLSYLNQKGVTTLLVLGQHGVIGEVRTD 434 Query: 123 IDLSYLSDTILLFRFFEARGDIATAVSVVKSRISNHPRSIHEFRLSPSQGLQIGEALQDF 182 IDLSYLSD ILLFRFFEA G+I TA+SVVKSR++ H R+I E RLS + GL++GEAL DF Sbjct: 435 IDLSYLSDCILLFRFFEASGEIRTALSVVKSRVNPHERTIRELRLS-TDGLRVGEALSDF 493 Query: 183 EGIMSGLPTYRGRTPIM 199 EG+++GLP YRGR ++ Sbjct: 494 EGVLTGLPAYRGRVEML 510 >ref|YP_001922862.1| circadian clock protein, KaiC [Methylobacterium populi BJ001] gb|ACB78327.1| putative circadian clock protein, KaiC [Methylobacterium populi BJ001] Length = 506 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 124/201 (61%), Positives = 160/201 (79%), Gaps = 1/201 (0%) Query: 3 RGERAAYYLFDEGRGTLMSRARALGMDVEPYIADGSLKLHSVNPAEMSPGEFTSTVRNAV 62 RGE A YYLFDEG TLM+R LGMD+ P++ G L + ++PAE+SPGEF + R+AV Sbjct: 301 RGESATYYLFDEGLATLMARCATLGMDLRPHVEAGRLTITQIDPAEVSPGEFATMARHAV 360 Query: 63 ENEGRSFAVIDSLNAYMQSMPGEKFLLLQMHEMLSYLSQQGVTTLLVLGQHGLVGEIRSD 122 E G +F VIDSLNAY+ +MPGE++L+LQMHE+LSYL+QQGVTTLLVLGQHG++GE+R+D Sbjct: 361 EERGSAFVVIDSLNAYLHAMPGEEYLILQMHELLSYLNQQGVTTLLVLGQHGVIGEVRTD 420 Query: 123 IDLSYLSDTILLFRFFEARGDIATAVSVVKSRISNHPRSIHEFRLSPSQGLQIGEALQDF 182 +DLSYLSD ILLFRFFEA+G I TA+SVVKSR++ H R+I E R S G+Q+G+AL DF Sbjct: 421 VDLSYLSDCILLFRFFEAKGQIRTALSVVKSRVNAHERTIRELRFS-GGGMQVGKALSDF 479 Query: 183 EGIMSGLPTYRGRTPIMATDA 203 EG+++GLP YRG ++ A Sbjct: 480 EGVLTGLPAYRGEVAMLTGQA 500 >ref|YP_001637519.1| non-specific serine/threonine protein kinase [Methylobacterium extorquens PA1] gb|ABY28448.1| Non-specific serine/threonine protein kinase [Methylobacterium extorquens PA1] Length = 520 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/197 (62%), Positives = 161/197 (81%), Gaps = 1/197 (0%) Query: 3 RGERAAYYLFDEGRGTLMSRARALGMDVEPYIADGSLKLHSVNPAEMSPGEFTSTVRNAV 62 RGE A YYLFDEG T+++RA LGMD+ P++ G L + ++PAE+SPGEF + VR AV Sbjct: 315 RGETATYYLFDEGLATMIARATLLGMDLRPHLGTGRLTIMQIDPAELSPGEFAAIVRQAV 374 Query: 63 ENEGRSFAVIDSLNAYMQSMPGEKFLLLQMHEMLSYLSQQGVTTLLVLGQHGLVGEIRSD 122 E G +F +DSLNAY+ +MPGE+ L+LQMHE+LSYL+Q+GVTTLLVLGQHG++GE+R+D Sbjct: 375 EERGSTFVAVDSLNAYLHAMPGEEHLILQMHELLSYLNQKGVTTLLVLGQHGVIGEVRTD 434 Query: 123 IDLSYLSDTILLFRFFEARGDIATAVSVVKSRISNHPRSIHEFRLSPSQGLQIGEALQDF 182 IDLSYLSD ILLFRFFEA G+I TA+SVVKSR++ H R+I E RLS + GL++GEAL DF Sbjct: 435 IDLSYLSDCILLFRFFEASGEIRTALSVVKSRVNPHERTIRELRLS-TDGLRVGEALSDF 493 Query: 183 EGIMSGLPTYRGRTPIM 199 EG+++GLP YRGR ++ Sbjct: 494 EGVLTGLPAYRGRVEML 510