BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0027.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775865.1| two component response regulator protein [He... 309 1e-82 ref|YP_004752852.1| putative Two-component response regulator [C... 303 6e-81 ref|YP_001354324.1| two-component response regulator [Janthinoba... 303 9e-81 ref|YP_001100939.1| putative two-component response regulator [H... 297 4e-79 ref|ZP_01915182.1| response regulator [Limnobacter sp. MED105] >... 288 2e-76 >ref|YP_003775865.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63957.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 153/178 (85%), Positives = 159/178 (89%) Query: 1 MSTERLLLIIEDDAAFARTLSRSFERRGYVVLHAASQDEAAALLTQHNPGYAVVDLKLNG 60 M +RLLLIIEDDAAFARTL RSFERRGY VL AASQ+EAA L QH PGYAVVDLKL G Sbjct: 1 MPADRLLLIIEDDAAFARTLGRSFERRGYTVLLAASQEEAAQHLQQHRPGYAVVDLKLGG 60 Query: 61 NTSGLSCVQMLHQHDEAMLIVVLTGFASIGTAVEAIKLGAIQYLAKPSNTDDIEAAFGQV 120 N SGL+CVQMLH HDE MLIVVLTGFASI TAVEAIKLGA QYLAKPSNTDDIEAAFG V Sbjct: 61 NASGLACVQMLHAHDEDMLIVVLTGFASITTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 Query: 121 AGNTEVELTARSTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 178 AG +EVEL AR+TSIK LEWERIHEVLV+TDFNISETARRLGMHRRTLARKLEKQRVK Sbjct: 121 AGVSEVELPARATSIKTLEWERIHEVLVDTDFNISETARRLGMHRRTLARKLEKQRVK 178 >ref|YP_004752852.1| putative Two-component response regulator [Collimonas fungivorans Ter331] gb|AEK62029.1| putative Two-component response regulator [Collimonas fungivorans Ter331] Length = 184 Score = 303 bits (776), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 149/178 (83%), Positives = 160/178 (89%) Query: 1 MSTERLLLIIEDDAAFARTLSRSFERRGYVVLHAASQDEAAALLTQHNPGYAVVDLKLNG 60 M+T+RLLLIIEDDA FARTL RSFERR Y VL A++ EAAALL QH+PGYAVVDLKLN Sbjct: 7 MATDRLLLIIEDDATFARTLGRSFERRDYTVLLASNLGEAAALLRQHSPGYAVVDLKLND 66 Query: 61 NTSGLSCVQMLHQHDEAMLIVVLTGFASIGTAVEAIKLGAIQYLAKPSNTDDIEAAFGQV 120 +TSGL+CVQMLH+HD AMLIVVLTGFASI TAVEAIKLGA QYLAKPSNTDDIEAAFG V Sbjct: 67 STSGLACVQMLHKHDPAMLIVVLTGFASINTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 126 Query: 121 AGNTEVELTARSTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 178 AG E+EL+ RSTSIK LEWERIHEVLVET FNISETARRLGMHRRTLARKLEKQR+K Sbjct: 127 AGAAEIELSNRSTSIKTLEWERIHEVLVETGFNISETARRLGMHRRTLARKLEKQRIK 184 >ref|YP_001354324.1| two-component response regulator [Janthinobacterium sp. Marseille] gb|ABR89253.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 179 Score = 303 bits (775), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 147/174 (84%), Positives = 158/174 (90%) Query: 5 RLLLIIEDDAAFARTLSRSFERRGYVVLHAASQDEAAALLTQHNPGYAVVDLKLNGNTSG 64 RLLLIIEDDAAFARTL RSFERRGY VL AA+ + A+ALL +HNPGYAVVDLKL GNTSG Sbjct: 6 RLLLIIEDDAAFARTLGRSFERRGYTVLLAANLEAASALLREHNPGYAVVDLKLEGNTSG 65 Query: 65 LSCVQMLHQHDEAMLIVVLTGFASIGTAVEAIKLGAIQYLAKPSNTDDIEAAFGQVAGNT 124 L+CVQMLH+HD AMLIVVLTGFAS+ TAVEAIKLGA QYLAKPSNTDDIEAAFG VAG Sbjct: 66 LACVQMLHKHDPAMLIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGHVAGVV 125 Query: 125 EVELTARSTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 178 E+E++ RSTSIK LEWERIHEVLVETDFNISE ARRLGMHRRTLARKLEKQR+K Sbjct: 126 EIEVSNRSTSIKTLEWERIHEVLVETDFNISEAARRLGMHRRTLARKLEKQRIK 179 >ref|YP_001100939.1| putative two-component response regulator [Herminiimonas arsenicoxydans] emb|CAL62818.1| Putative two-component response regulator [Herminiimonas arsenicoxydans] Length = 178 Score = 297 bits (760), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 147/178 (82%), Positives = 154/178 (86%) Query: 1 MSTERLLLIIEDDAAFARTLSRSFERRGYVVLHAASQDEAAALLTQHNPGYAVVDLKLNG 60 MS ER LLIIEDD AFARTL RSFERR Y VL A+SQDEAAALL Q P YAVVDLKLNG Sbjct: 1 MSVERTLLIIEDDGAFARTLGRSFERRNYRVLLASSQDEAAALLQQEKPAYAVVDLKLNG 60 Query: 61 NTSGLSCVQMLHQHDEAMLIVVLTGFASIGTAVEAIKLGAIQYLAKPSNTDDIEAAFGQV 120 +TSGL+CVQMLH+HD AM IVVLTGFAS+ TAVEAIKLGA QYLAKPSNTDDIEAAFG V Sbjct: 61 HTSGLACVQMLHKHDPAMQIVVLTGFASLNTAVEAIKLGACQYLAKPSNTDDIEAAFGHV 120 Query: 121 AGNTEVELTARSTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 178 AGN +VEL RSTSIK LEWE IH VL E+DFNISE ARRLGMHRRTLARKLEKQRVK Sbjct: 121 AGNVDVELGNRSTSIKTLEWEHIHAVLAESDFNISEAARRLGMHRRTLARKLEKQRVK 178 >ref|ZP_01915182.1| response regulator [Limnobacter sp. MED105] gb|EDM83693.1| response regulator [Limnobacter sp. MED105] Length = 182 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 140/177 (79%), Positives = 155/177 (87%) Query: 2 STERLLLIIEDDAAFARTLSRSFERRGYVVLHAASQDEAAALLTQHNPGYAVVDLKLNGN 61 S ERLLL++EDD AFAR L RSFERR Y VLHA+SQ+E +L + P +AVVDLKL+GN Sbjct: 6 SMERLLLLVEDDEAFARVLKRSFERRDYKVLHASSQEEMQDVLLKQTPTHAVVDLKLSGN 65 Query: 62 TSGLSCVQMLHQHDEAMLIVVLTGFASIGTAVEAIKLGAIQYLAKPSNTDDIEAAFGQVA 121 +SGL+CVQ LH+H+ MLIVVLTGFASI TAVEAIKLGA QYLAKPSNTDDIEAAFG VA Sbjct: 66 SSGLNCVQALHEHNPTMLIVVLTGFASINTAVEAIKLGACQYLAKPSNTDDIEAAFGHVA 125 Query: 122 GNTEVELTARSTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKQRVK 178 G+ VELT R+TSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEK+RVK Sbjct: 126 GSEPVELTNRTTSIKNLEWERIHEVLVETDFNISETARRLGMHRRTLARKLEKRRVK 182