BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0026.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752853.1| putative Two-component sensor [Collimonas fu... 251 4e-65 ref|YP_001354325.1| two-component sensor histidine kinase [Janth... 243 1e-62 ref|YP_003775866.1| two component sensor histidine kinase [Herba... 230 1e-58 ref|YP_002945931.1| histidine kinase [Variovorax paradoxus S110]... 224 6e-57 ref|YP_004156990.1| integral membrane sensor signal transduction... 222 2e-56 >ref|YP_004752853.1| putative Two-component sensor [Collimonas fungivorans Ter331] gb|AEK62030.1| putative Two-component sensor [Collimonas fungivorans Ter331] Length = 459 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 124/178 (69%), Positives = 145/178 (81%), Gaps = 4/178 (2%) Query: 16 RLVACKTIVSGILLSAGEARGESSVKTTLNTFLGDIAEEFRTTRPIVAFDYRNLIEHDMP 75 +L CK+IVSGILLSAGEARGESSVKTT++TFL D+A+E+ TRPIV+F Y N IE DMP Sbjct: 282 QLQRCKSIVSGILLSAGEARGESSVKTTISTFLNDLAKEWCATRPIVSFAYENRIEQDMP 341 Query: 76 VAFDSALKQMICNVLDNALEASPRWLSFTAAREENQLKLTVDDTGPGFVPSMLDQIGKPY 135 VAFDSALKQMICNVLDNALEASP+W+S A RE + L L V D+GPGF P+ML +GKPY Sbjct: 342 VAFDSALKQMICNVLDNALEASPQWVSLEATREADALTLVVTDSGPGFAPAMLAHLGKPY 401 Query: 136 QSTKAKTGGGLGLFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAISLEAES 193 QS+K + G GLGLFFVVNVARKLGGAVTA NR + GA V LTLPL++ISLE ++ Sbjct: 402 QSSKGRPGSGLGLFFVVNVARKLGGAVTARNREQG----GALVQLTLPLASISLEQDA 455 >ref|YP_001354325.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] gb|ABR91264.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 448 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 120/177 (67%), Positives = 138/177 (77%), Gaps = 4/177 (2%) Query: 16 RLVACKTIVSGILLSAGEARGESSVKTTLNTFLGDIAEEFRTTRPIVAFDYRNLIEHDMP 75 +L CK IVS ILLSAGEARGESSVKTTL+TFL D+AEE+R +R I +F+Y+N IE D+P Sbjct: 271 QLKRCKAIVSSILLSAGEARGESSVKTTLSTFLNDLAEEWRHSRAITSFEYKNRIEQDIP 330 Query: 76 VAFDSALKQMICNVLDNALEASPRWLSFTAAREENQLKLTVDDTGPGFVPSMLDQIGKPY 135 V FDS LKQMICNVLDNA+EASP WLS +R+E+ L L + D GPGF P ML QIGKPY Sbjct: 331 VVFDSVLKQMICNVLDNAVEASPHWLSLEVSRKEDLLTLLITDAGPGFAPGMLSQIGKPY 390 Query: 136 QSTKAKTGGGLGLFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAISLEAE 192 QSTK + G GLGLF VVNVARKLGG V A NR+E GA V LTLPLSAISL+ + Sbjct: 391 QSTKGRPGSGLGLFLVVNVARKLGGTVAARNRAE----GGAAVELTLPLSAISLDED 443 >ref|YP_003775866.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63958.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 460 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 116/178 (65%), Positives = 135/178 (75%), Gaps = 4/178 (2%) Query: 16 RLVACKTIVSGILLSAGEARGESSVKTTLNTFLGDIAEEFRTTRPIVAFDYRNLIEHDMP 75 +L CK+IVSG+LLSAG+ARGESS+KTTLNTFL +AE++R +RP+ FDY+NLI D+P Sbjct: 272 QLQRCKSIVSGVLLSAGQARGESSIKTTLNTFLDSVAEDWRKSRPVAVFDYQNLIGQDLP 331 Query: 76 VAFDSALKQMICNVLDNALEASPRWLSFTAAREENQLKLTVDDTGPGFVPSMLDQIGKPY 135 VAFDSA+KQM+ NVLDNA E SP WLS RE L + V D GPGF M++QIGKPY Sbjct: 332 VAFDSAIKQMLGNVLDNAFEVSPHWLSLEVRREGGLLLMEVSDQGPGFPEWMINQIGKPY 391 Query: 136 QSTKAKTGGGLGLFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAISLEAES 193 QSTK K G GLGLFFVVNVARKLGG V A N AGA V L LPLSAISLEA++ Sbjct: 392 QSTKGKPGRGLGLFFVVNVARKLGGRVWASNLPG----AGARVTLELPLSAISLEADA 445 >ref|YP_002945931.1| histidine kinase [Variovorax paradoxus S110] gb|ACS20665.1| histidine kinase [Variovorax paradoxus S110] Length = 465 Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 109/170 (64%), Positives = 129/170 (75%), Gaps = 4/170 (2%) Query: 20 CKTIVSGILLSAGEARGESSVKTTLNTFLGDIAEEFRTTRPIVAFDYRNLIEHDMPVAFD 79 CK+IVSGILLSAGEARGESS +TT+ TFL ++ EE+R+TRP+ FDY N D+P+ D Sbjct: 276 CKSIVSGILLSAGEARGESSEETTVRTFLDELVEEWRSTRPVEEFDYENRFGQDLPMVSD 335 Query: 80 SALKQMICNVLDNALEASPRWLSFTAAREENQLKLTVDDTGPGFVPSMLDQIGKPYQSTK 139 SALKQMICNVLDNALEASP WL F A + + L LTV D GPGF+P++L + GKPYQS+K Sbjct: 336 SALKQMICNVLDNALEASPHWLRFEVAHDADALTLTVTDAGPGFLPAILKEFGKPYQSSK 395 Query: 140 AKTGGGLGLFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAISL 189 + GGGLGLF VVNVAR LGG V HNR E GA V +TLPL+AI L Sbjct: 396 GRPGGGLGLFLVVNVARTLGGRVAVHNRPEG----GAIVAITLPLAAIVL 441 >ref|YP_004156990.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] gb|ADU38879.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] Length = 460 Score = 222 bits (566), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/175 (62%), Positives = 131/175 (74%), Gaps = 4/175 (2%) Query: 20 CKTIVSGILLSAGEARGESSVKTTLNTFLGDIAEEFRTTRPIVAFDYRNLIEHDMPVAFD 79 CK+IVSGILLSAGEARGESS +TT++TFL ++ EE+RTTRP+ FDY N D+P+ D Sbjct: 274 CKSIVSGILLSAGEARGESSEETTVSTFLDNLVEEWRTTRPVEEFDYDNRFGQDLPMVSD 333 Query: 80 SALKQMICNVLDNALEASPRWLSFTAAREENQLKLTVDDTGPGFVPSMLDQIGKPYQSTK 139 SALKQMICNVLDNALEASP WL A + + L +TV D GPGF+P++L + GKPYQS+K Sbjct: 334 SALKQMICNVLDNALEASPHWLRLEATHDADNLTITVTDAGPGFLPAILKEFGKPYQSSK 393 Query: 140 AKTGGGLGLFFVVNVARKLGGAVTAHNRSENGHVAGATVCLTLPLSAISLEAESA 194 + GGGLGLF V NVAR LGG V A NR E GA V +TLPL+A+ LE E A Sbjct: 394 GRPGGGLGLFLVANVARTLGGRVAARNRPE----GGAIVTVTLPLAAVVLEEEEA 444