BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0023.p (548 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752853.1| putative Two-component sensor [Collimonas fu... 403 e-110 ref|YP_003775866.1| two component sensor histidine kinase [Herba... 377 e-102 ref|YP_001354325.1| two-component sensor histidine kinase [Janth... 375 e-102 ref|YP_004156990.1| integral membrane sensor signal transduction... 361 1e-97 ref|YP_002945931.1| histidine kinase [Variovorax paradoxus S110]... 357 3e-96 >ref|YP_004752853.1| putative Two-component sensor [Collimonas fungivorans Ter331] gb|AEK62030.1| putative Two-component sensor [Collimonas fungivorans Ter331] Length = 459 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/256 (78%), Positives = 214/256 (83%) Query: 12 IARAPDRAAGHKNMLQLIQLRWIAVFGQITTIIVVIFGFDIHLPLPHMLEVLACLIAFNI 71 IA + AAGHKNMLQLIQLRWIAV GQITTI VI GF IHLPLPHML+VLACL+AFNI Sbjct: 30 IAAGVESAAGHKNMLQLIQLRWIAVIGQITTIAFVIAGFGIHLPLPHMLKVLACLVAFNI 89 Query: 72 GSHLRWHERPFVTNRELFLALLVDVATLTAQLYLSGGASNPFAFLYLLQVILSAVLLEAW 131 SHLRWHER +N ELFLALLVDV LTAQLY SGG +NPFAFL+LLQVILSAVLLE W Sbjct: 90 ASHLRWHERRVASNGELFLALLVDVGILTAQLYFSGGITNPFAFLFLLQVILSAVLLETW 149 Query: 132 STWTIVCITGLCFAGLSQFFMPLSLPPDHDEGLFSLYVEGMLISFLLIAALLAIFITRIS 191 STWTIV +T C AGLS F PL+LPPDH GL SLYVEG+LI F+L AALL FITRI Sbjct: 150 STWTIVAVTSACLAGLSLFSEPLALPPDHGNGLSSLYVEGLLICFVLNAALLVFFITRIG 209 Query: 192 SNRRAGDAQLAALRQRAAEEDHIVRMGLLASGAAHELGTPLATLAVILGDWKRMPEFSSN 251 N RAG AQLA LRQRAAEEDHIVRMGLLASGAAHELGTPLATL+VILGDW+RMPEFS N Sbjct: 210 RNLRAGAAQLADLRQRAAEEDHIVRMGLLASGAAHELGTPLATLSVILGDWRRMPEFSKN 269 Query: 252 PVLIEEISEMQIQLQR 267 L+EEISEMQ QLQR Sbjct: 270 SELLEEISEMQAQLQR 285 >ref|YP_003775866.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63958.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 460 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/248 (73%), Positives = 209/248 (84%) Query: 20 AGHKNMLQLIQLRWIAVFGQITTIIVVIFGFDIHLPLPHMLEVLACLIAFNIGSHLRWHE 79 AGH+NML LIQLRW+AV GQ++TI V+ FD+HLPLPHMLEVL+CL+AFNI SHLRWHE Sbjct: 28 AGHQNMLLLIQLRWLAVLGQVSTIAFVVLVFDLHLPLPHMLEVLSCLVAFNIASHLRWHE 87 Query: 80 RPFVTNRELFLALLVDVATLTAQLYLSGGASNPFAFLYLLQVILSAVLLEAWSTWTIVCI 139 R TN ELFLALLVDVA LT QLYLSGG +NPFAFLYL+Q+ILSAVLL+ WS+W IV + Sbjct: 88 RRIATNAELFLALLVDVAVLTFQLYLSGGITNPFAFLYLMQIILSAVLLKPWSSWAIVGV 147 Query: 140 TGLCFAGLSQFFMPLSLPPDHDEGLFSLYVEGMLISFLLIAALLAIFITRISSNRRAGDA 199 T LC AGL+ F PL+LPPDH+ GL SLYVEG LI FLL A L+ FITRISSN RAGDA Sbjct: 148 TMLCLAGLALFSEPLALPPDHNAGLLSLYVEGTLICFLLNAGLMVFFITRISSNLRAGDA 207 Query: 200 QLAALRQRAAEEDHIVRMGLLASGAAHELGTPLATLAVILGDWKRMPEFSSNPVLIEEIS 259 LA LRQRAAEEDHIVRMGLLASGAAHELGTPLAT++VILGDWKRMPE S ++++I+ Sbjct: 208 LLADLRQRAAEEDHIVRMGLLASGAAHELGTPLATVSVILGDWKRMPEISQRQDMLDDIA 267 Query: 260 EMQIQLQR 267 EM+ QLQR Sbjct: 268 EMEAQLQR 275 >ref|YP_001354325.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] gb|ABR91264.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 448 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/251 (74%), Positives = 206/251 (82%) Query: 17 DRAAGHKNMLQLIQLRWIAVFGQITTIIVVIFGFDIHLPLPHMLEVLACLIAFNIGSHLR 76 + + GHKNM QLIQLRWIAV GQITTI VV GF I LP+ HMLEVL CL+AFNI SHLR Sbjct: 24 ENSVGHKNMQQLIQLRWIAVVGQITTIAVVTLGFGIELPVRHMLEVLVCLVAFNIASHLR 83 Query: 77 WHERPFVTNRELFLALLVDVATLTAQLYLSGGASNPFAFLYLLQVILSAVLLEAWSTWTI 136 WHERP V+N ELFLALLVDV LTAQLYLSGG +NPF FLYLLQVILSAVLLEAWSTW I Sbjct: 84 WHERPSVSNSELFLALLVDVGILTAQLYLSGGTTNPFIFLYLLQVILSAVLLEAWSTWII 143 Query: 137 VCITGLCFAGLSQFFMPLSLPPDHDEGLFSLYVEGMLISFLLIAALLAIFITRISSNRRA 196 V IT C LS PL+LP DH+ FS+YV+GMLI F L A LLA FITRI+ N RA Sbjct: 144 VAITSACLVALSILSSPLTLPYDHEYRFFSMYVQGMLICFALNAILLAFFITRINRNLRA 203 Query: 197 GDAQLAALRQRAAEEDHIVRMGLLASGAAHELGTPLATLAVILGDWKRMPEFSSNPVLIE 256 GDAQLA LR+RAAEE++IVRMGLLASGAAHELGTPLATL+VILGDW+RMPEFS+NP L + Sbjct: 204 GDAQLADLRKRAAEEENIVRMGLLASGAAHELGTPLATLSVILGDWRRMPEFSNNPELQD 263 Query: 257 EISEMQIQLQR 267 EI EM+ QL+R Sbjct: 264 EIIEMETQLKR 274 >ref|YP_004156990.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] gb|ADU38879.1| integral membrane sensor signal transduction histidine kinase [Variovorax paradoxus EPS] Length = 460 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 185/261 (70%), Positives = 211/261 (80%), Gaps = 1/261 (0%) Query: 8 PGPEIARAP-DRAAGHKNMLQLIQLRWIAVFGQITTIIVVIFGFDIHLPLPHMLEVLACL 66 P P A D A GHKNM QLIQLRW AV GQ+ TI+VV +GF I LPL +ML+VL CL Sbjct: 13 PAPRAGVASLDNATGHKNMQQLIQLRWFAVVGQVATILVVHYGFGIRLPLDNMLQVLTCL 72 Query: 67 IAFNIGSHLRWHERPFVTNRELFLALLVDVATLTAQLYLSGGASNPFAFLYLLQVILSAV 126 FN+ S LR VTN ELFLALLVDVATLTAQLYLSGGA+NPF FLYLLQVIL AV Sbjct: 73 ALFNMVSLLRSRTHRRVTNGELFLALLVDVATLTAQLYLSGGATNPFVFLYLLQVILGAV 132 Query: 127 LLEAWSTWTIVCITGLCFAGLSQFFMPLSLPPDHDEGLFSLYVEGMLISFLLIAALLAIF 186 LL+AWSTWTIV IT LCFAGL+ F PL+LP DHD GL+S Y++GML+ F L AALL IF Sbjct: 133 LLKAWSTWTIVVITSLCFAGLALFSRPLALPLDHDRGLWSPYIQGMLVCFALNAALLVIF 192 Query: 187 ITRISSNRRAGDAQLAALRQRAAEEDHIVRMGLLASGAAHELGTPLATLAVILGDWKRMP 246 ITRIS N RA DA+LA LRQRA+EE+HIVRMGLLASGAAHELGTPLATLAVILGDW+R+P Sbjct: 193 ITRISRNLRARDARLADLRQRASEEEHIVRMGLLASGAAHELGTPLATLAVILGDWRRLP 252 Query: 247 EFSSNPVLIEEISEMQIQLQR 267 FSS+P L+ E++EM++Q+QR Sbjct: 253 HFSSDPELLTEVAEMELQIQR 273 >ref|YP_002945931.1| histidine kinase [Variovorax paradoxus S110] gb|ACS20665.1| histidine kinase [Variovorax paradoxus S110] Length = 465 Score = 357 bits (916), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 184/261 (70%), Positives = 212/261 (81%), Gaps = 1/261 (0%) Query: 7 PPGPEIARAPDRAAGHKNMLQLIQLRWIAVFGQITTIIVVIFGFDIHLPLPHMLEVLACL 66 PP +A + D A GHKNM QLI+LRW AV GQ+ TI+VV +GF I LPL HML+VL CL Sbjct: 16 PPRAGVA-SLDNATGHKNMQQLIELRWFAVVGQVATILVVHYGFGIRLPLEHMLQVLTCL 74 Query: 67 IAFNIGSHLRWHERPFVTNRELFLALLVDVATLTAQLYLSGGASNPFAFLYLLQVILSAV 126 FN S LR VTN ELFLALLVDVATLTAQLYLSGGA+NPF FLYLLQVIL AV Sbjct: 75 ALFNGVSLLRSRSPRRVTNGELFLALLVDVATLTAQLYLSGGATNPFVFLYLLQVILGAV 134 Query: 127 LLEAWSTWTIVCITGLCFAGLSQFFMPLSLPPDHDEGLFSLYVEGMLISFLLIAALLAIF 186 LL+AWSTWTIV +T LCFAGL+ F PL+LP DHD GL+S YV+GML+ F L AALL +F Sbjct: 135 LLKAWSTWTIVAVTCLCFAGLALFSRPLALPLDHDRGLWSPYVQGMLVCFALNAALLVVF 194 Query: 187 ITRISSNRRAGDAQLAALRQRAAEEDHIVRMGLLASGAAHELGTPLATLAVILGDWKRMP 246 ITRIS N RA DA+LA LRQRA+EE+HIVRMGLLASGAAHELGTPLATLAVILGDW+R+P Sbjct: 195 ITRISRNLRARDARLADLRQRASEEEHIVRMGLLASGAAHELGTPLATLAVILGDWRRLP 254 Query: 247 EFSSNPVLIEEISEMQIQLQR 267 FSS+P L+ E++EM++Q+QR Sbjct: 255 HFSSDPELLTEVAEMELQIQR 275