BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0020.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004752855.1| cytochrome O ubiquinol oxidase subunit IV [C...   182   1e-44
ref|ZP_08276292.1| Cytochrome O ubiquinol oxidase subunit IV [Ox...   182   2e-44
ref|YP_001354327.1| cytochrome o ubiquinol oxidase operon protei...   164   4e-39
ref|YP_004146383.1| cytochrome o ubiquinol oxidase subunit IV [P...   161   2e-38
ref|YP_003775868.1| ubiquinol oxidase subunit IV protein [Herbas...   161   3e-38

>ref|YP_004752855.1| cytochrome O ubiquinol oxidase subunit IV [Collimonas fungivorans
           Ter331]
 gb|AEK62032.1| Cytochrome O ubiquinol oxidase subunit IV [Collimonas fungivorans
           Ter331]
          Length = 161

 Score =  182 bits (462), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/150 (68%), Positives = 115/150 (76%), Gaps = 6/150 (4%)

Query: 6   HQEHPSHAEKYGHQDGFDVHHHDHTADHGSLKSYTIGFVLAVILTAIPFWLVMGNVIEKS 65
           HQ+HP+ A  + H D          ADHGSLKSYT GFVLAVILTAIPFWLVM  V +KS
Sbjct: 5   HQQHPARAVSHDHDDHHGHT----HADHGSLKSYTTGFVLAVILTAIPFWLVMAKVFDKS 60

Query: 66  STAGFVLLGLAVVQIVVHMIYFLHMNSRSEGGWTILALIFTIMVVVIMLAGSLWVMYHLN 125
           ST G VLLG A VQIVVHM+YFLHMN++SEGGW++LALIFTIM+V IML+GSLWVMYHLN
Sbjct: 61  STTGLVLLGFAAVQIVVHMVYFLHMNTKSEGGWSMLALIFTIMLVFIMLSGSLWVMYHLN 120

Query: 126 HNMMPGMSQDLIQEAVPGSMQNMQHNMPGM 155
           HNMMPGM  D   E VP SMQ M  +MP M
Sbjct: 121 HNMMPGMMPD-TTEVVPESMQKMP-DMPKM 148


>ref|ZP_08276292.1| Cytochrome O ubiquinol oxidase subunit IV [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF30239.1| Cytochrome O ubiquinol oxidase subunit IV [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 180

 Score =  182 bits (461), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 111/144 (77%), Gaps = 3/144 (2%)

Query: 13  AEKYGHQDGFDVHHHDHTADHGSLKSYTIGFVLAVILTAIPFWLVMGNVIEKSSTAGFVL 72
           A   GH +  D  HH H ADHGS+KSY  GF+LAVILTAIPFW+V+G V EKSST   V+
Sbjct: 10  APAGGHHE-HDESHHTH-ADHGSVKSYLTGFILAVILTAIPFWVVLGKVFEKSSTTALVV 67

Query: 73  LGLAVVQIVVHMIYFLHMNSRSEGGWTILALIFTIMVVVIMLAGSLWVMYHLNHNMMPGM 132
           LG A VQIVVHM+YFLHMN++SEGGW+ILALIFT ++VVIML+GS+WVMYHLNHNMMPGM
Sbjct: 68  LGFAAVQIVVHMVYFLHMNTKSEGGWSILALIFTTILVVIMLSGSIWVMYHLNHNMMPGM 127

Query: 133 SQDLIQEAVPGSMQNMQHNMPGMK 156
             D   +A  GS++     MP M+
Sbjct: 128 MPDTTGDATTGSIKG-PAAMPAME 150


>ref|YP_001354327.1| cytochrome o ubiquinol oxidase operon protein [Janthinobacterium
           sp. Marseille]
 gb|ABR89077.1| cytochrome o ubiquinol oxidase operon protein [Janthinobacterium
           sp. Marseille]
          Length = 149

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 90/100 (90%)

Query: 35  SLKSYTIGFVLAVILTAIPFWLVMGNVIEKSSTAGFVLLGLAVVQIVVHMIYFLHMNSRS 94
           SLKSYTIGF+L+VILTAIPFWLVMG V + SST  FV+LG A VQIVVHM+YFLHMN++S
Sbjct: 28  SLKSYTIGFILSVILTAIPFWLVMGKVFDSSSTTAFVILGFAAVQIVVHMVYFLHMNTKS 87

Query: 95  EGGWTILALIFTIMVVVIMLAGSLWVMYHLNHNMMPGMSQ 134
           EGGW++L LIFTIMVVVIMLAGS+WVMYH+NHNMMP +S 
Sbjct: 88  EGGWSMLGLIFTIMVVVIMLAGSIWVMYHMNHNMMPHLSD 127


>ref|YP_004146383.1| cytochrome o ubiquinol oxidase subunit IV [Pseudoxanthomonas
           suwonensis 11-1]
 gb|ADV27152.1| cytochrome o ubiquinol oxidase subunit IV [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 139

 Score =  161 bits (408), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/130 (63%), Positives = 103/130 (79%), Gaps = 4/130 (3%)

Query: 7   QEHPSHAEKYGH---QDGFDVHHHDHTADHGSLKSYTIGFVLAVILTAIPFWLVMGNVIE 63
           Q H +HA  +GH   + G + H HD  A HGS++ Y IGFVL+VILTAIPFWLVMGNVI+
Sbjct: 3   QPHDTHAMAHGHSHDEHGGEHHAHDEGA-HGSMRDYVIGFVLSVILTAIPFWLVMGNVIQ 61

Query: 64  KSSTAGFVLLGLAVVQIVVHMIYFLHMNSRSEGGWTILALIFTIMVVVIMLAGSLWVMYH 123
              T   V+LG AVVQIVV M+YFLHMN+RSEGGW +LAL+FT+++VVI+LAGSLWVM+H
Sbjct: 62  DQGTTALVILGFAVVQIVVQMVYFLHMNARSEGGWNMLALMFTVVLVVIVLAGSLWVMHH 121

Query: 124 LNHNMMPGMS 133
           +N NMMP +S
Sbjct: 122 MNANMMPHIS 131


>ref|YP_003775868.1| ubiquinol oxidase subunit IV protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63960.1| ubiquinol oxidase subunit IV protein [Herbaspirillum seropedicae
           SmR1]
          Length = 158

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 97/126 (76%), Gaps = 4/126 (3%)

Query: 35  SLKSYTIGFVLAVILTAIPFWLVMGNVIEKSSTAGFVLLGLAVVQIVVHMIYFLHMNSRS 94
           ++K Y  GFVLAVILTAIPFWLVM   I  S+T G VLL LA VQIVVH+ YFLHMN +S
Sbjct: 33  TMKDYVTGFVLAVILTAIPFWLVMNKSISSSATMGIVLLALAAVQIVVHIKYFLHMNGKS 92

Query: 95  EGGWTILALIFTIMVVVIMLAGSLWVMYHLNHNMMPGMS-QDLIQEAVPGS---MQNMQH 150
           EGGW +LA+IFTI++VVI LAGSLWVMYHLNHNMMP MS +++  E VP S   MQ MQH
Sbjct: 93  EGGWNMLAMIFTIVIVVITLAGSLWVMYHLNHNMMPTMSPENMPTETVPQSMQGMQGMQH 152

Query: 151 NMPGMK 156
           + P  K
Sbjct: 153 SAPQSK 158