BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0019.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752856.1| cytochrome O ubiquinol oxidase subunit III [... 365 3e-99 ref|YP_001354328.1| cytochrome o ubiquinol oxidase subunit III [... 364 4e-99 ref|YP_003775869.1| cytochrome o ubiquinol oxidase subunit III p... 362 2e-98 ref|ZP_08276293.1| Cytochrome O ubiquinol oxidase subunit III [O... 340 6e-92 ref|YP_001100943.1| cytochrome o ubiquinol oxidase subunit III [... 338 3e-91 >ref|YP_004752856.1| cytochrome O ubiquinol oxidase subunit III [Collimonas fungivorans Ter331] gb|AEK62033.1| Cytochrome O ubiquinol oxidase subunit III [Collimonas fungivorans Ter331] Length = 218 Score = 365 bits (936), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 175/198 (88%), Positives = 187/198 (94%) Query: 3 ASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLP 62 A PS+R++ REHHPENGTLLGFW+YLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLP Sbjct: 21 ADPSARFYTREHHPENGTLLGFWLYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLP 80 Query: 63 LVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHEG 122 LVA+NTSLLLLSSITYGFAMLEMQ+++ TL WLAVTG+LGA FI ELYEFVHLIHEG Sbjct: 81 LVAVNTSLLLLSSITYGFAMLEMQRKRQGATLAWLAVTGILGACFIGFELYEFVHLIHEG 140 Query: 123 AGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHFL 182 AGPQRSGFLTSFFALVATHGLHVSFGIVWL+TLMFQ+ +HGLT ENGRRLMCLSMFWHFL Sbjct: 141 AGPQRSGFLTSFFALVATHGLHVSFGIVWLVTLMFQVKRHGLTAENGRRLMCLSMFWHFL 200 Query: 183 DVVWIGVFTFVYLMGVLP 200 DVVWIGVFTFVYLMGVLP Sbjct: 201 DVVWIGVFTFVYLMGVLP 218 >ref|YP_001354328.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille] gb|ABR89095.1| cytochrome o ubiquinol oxidase subunit III [Janthinobacterium sp. Marseille] Length = 210 Score = 364 bits (934), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 169/200 (84%), Positives = 188/200 (94%) Query: 1 MDASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFD 60 + A PS+RY+V+EHHPENGTLLGFW+YLMSDCLIFACLFATYAVLGRNYAGGPTGAELFD Sbjct: 11 LSADPSARYYVQEHHPENGTLLGFWLYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFD 70 Query: 61 LPLVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIH 120 LPLVA NT+ LLLSSITYGFAMLE Q+++++ T+IWLA+TGLLGA F+ LELYEF HLIH Sbjct: 71 LPLVAANTAFLLLSSITYGFAMLEAQRKRLKATMIWLAITGLLGAAFLALELYEFSHLIH 130 Query: 121 EGAGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWH 180 EGAGPQRS FLTSFFALVATHGLHV+FGI+WLITLMFQ+ +HGL PENGRRLMCLSMFWH Sbjct: 131 EGAGPQRSAFLTSFFALVATHGLHVTFGIIWLITLMFQLKRHGLIPENGRRLMCLSMFWH 190 Query: 181 FLDVVWIGVFTFVYLMGVLP 200 FLDV+WIGVFTFVYLMGVLP Sbjct: 191 FLDVIWIGVFTFVYLMGVLP 210 >ref|YP_003775869.1| cytochrome o ubiquinol oxidase subunit III protein [Herbaspirillum seropedicae SmR1] gb|ADJ63961.1| cytochrome o ubiquinol oxidase subunit III protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 172/199 (86%), Positives = 185/199 (92%) Query: 2 DASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDL 61 DA+PSSRYFVR HHPENGTLLGFW+YLMSDCLIFACLFA YAVLGRNYAGGPTGAELFDL Sbjct: 10 DATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDL 69 Query: 62 PLVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHE 121 PLVA+NT+LLLLSSITYGFAML MQ +K + T+ WL +TGLLGAGFIY ELYEF+HLIHE Sbjct: 70 PLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHE 129 Query: 122 GAGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHF 181 GAGP RSGFLTSFFALV THGLHV+FGI+WL+ L+FQINKHGLT NGRRLMCLSMFWHF Sbjct: 130 GAGPTRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFWHF 189 Query: 182 LDVVWIGVFTFVYLMGVLP 200 LDVVWIGVFTFVYLMGVLP Sbjct: 190 LDVVWIGVFTFVYLMGVLP 208 >ref|ZP_08276293.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480] gb|EGF30240.1| Cytochrome O ubiquinol oxidase subunit III [Oxalobacteraceae bacterium IMCC9480] Length = 202 Score = 340 bits (872), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 159/198 (80%), Positives = 181/198 (91%) Query: 3 ASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDLP 62 + S+RY+V EHHPENGT LGFW+YLMSDCL+FA LFA YAVLGRNYAGGPTGAELFDLP Sbjct: 5 TTDSTRYYVLEHHPENGTTLGFWLYLMSDCLVFAALFAVYAVLGRNYAGGPTGAELFDLP 64 Query: 63 LVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHEG 122 LVA+NT+ LL+SSITYGFAMLEMQ+++VR+TLIW+ +TGL+GA FI LE+YEF+HLIHEG Sbjct: 65 LVALNTAFLLVSSITYGFAMLEMQRKRVRSTLIWMGITGLIGACFIGLEMYEFIHLIHEG 124 Query: 123 AGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHFL 182 AGPQRSGFLT+FF LV THGLHV FGI+WL+TLM Q++ HGLT EN RRLMCLSMFWHFL Sbjct: 125 AGPQRSGFLTAFFTLVGTHGLHVMFGIIWLVTLMLQVSVHGLTTENSRRLMCLSMFWHFL 184 Query: 183 DVVWIGVFTFVYLMGVLP 200 DVVWIGVFTFVYLMGVLP Sbjct: 185 DVVWIGVFTFVYLMGVLP 202 >ref|YP_001100943.1| cytochrome o ubiquinol oxidase subunit III [Herminiimonas arsenicoxydans] emb|CAL62822.1| Cytochrome o ubiquinol oxidase subunit 3 (Cytochrome o ubiquinol oxidase subunit III) [Herminiimonas arsenicoxydans] Length = 214 Score = 338 bits (866), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 159/199 (79%), Positives = 178/199 (89%) Query: 2 DASPSSRYFVREHHPENGTLLGFWMYLMSDCLIFACLFATYAVLGRNYAGGPTGAELFDL 61 A S+RY+V+EHHPE+ T LGFW+YLMSDCLIFACLFATYAVLGR+YAGGPTGAELFDL Sbjct: 16 SADASTRYYVKEHHPESSTSLGFWIYLMSDCLIFACLFATYAVLGRSYAGGPTGAELFDL 75 Query: 62 PLVAINTSLLLLSSITYGFAMLEMQKQKVRTTLIWLAVTGLLGAGFIYLELYEFVHLIHE 121 PLVA+NT+ LL+SSITYG AMLE + +VR+TLIWLA+TG+LGAGF+ LELYEF HLIHE Sbjct: 76 PLVAMNTAFLLVSSITYGVAMLEAHRNRVRSTLIWLAITGMLGAGFLALELYEFNHLIHE 135 Query: 122 GAGPQRSGFLTSFFALVATHGLHVSFGIVWLITLMFQINKHGLTPENGRRLMCLSMFWHF 181 GAGPQ S FLTSFFALV THGLHV+FGI+WLI LMFQ+ K GL EN RRLMCLSMFWHF Sbjct: 136 GAGPQTSAFLTSFFALVGTHGLHVTFGIIWLIVLMFQVGKFGLNVENKRRLMCLSMFWHF 195 Query: 182 LDVVWIGVFTFVYLMGVLP 200 LDV+WIGVFTFVYLMGVLP Sbjct: 196 LDVIWIGVFTFVYLMGVLP 214