BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0016.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752858.1| cytochrome O ubiquinol oxidase subunit II [C... 457 e-126 ref|ZP_08274761.1| Cytochrome O ubiquinol oxidase subunit II [Ox... 451 e-125 ref|YP_002945926.1| ubiquinol oxidase subunit II [Variovorax par... 449 e-124 ref|YP_004156985.1| ubiquinol oxidase subunit ii [Variovorax par... 446 e-123 ref|YP_003775871.1| cytochrome o ubiquinol oxidase subunit II pr... 441 e-121 >ref|YP_004752858.1| cytochrome O ubiquinol oxidase subunit II [Collimonas fungivorans Ter331] gb|AEK62035.1| Cytochrome O ubiquinol oxidase subunit II [Collimonas fungivorans Ter331] Length = 317 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/282 (78%), Positives = 248/282 (87%) Query: 19 AGCNTVVLNPSGDIANQQGRLIIISTILMLLIIVPVIVLIGLFAWRYRQNNTAARYEPDW 78 AGCNTVV+NPSGDIA+QQGRLI++STILMLLIIVPVI L FAWRYR+NNTAARYEPDW Sbjct: 19 AGCNTVVMNPSGDIASQQGRLIVVSTILMLLIIVPVIALTIWFAWRYRKNNTAARYEPDW 78 Query: 79 DHSTQLELVIWGAPLLIIIALGLLTWISTHTLDPYRKLSRLDALRPIPENVKPLIVEVVA 138 DHSTQLELVIWGAPLLIIIALGLLTWISTHTLDPYR LSRLDA RPIP + K L VEVVA Sbjct: 79 DHSTQLELVIWGAPLLIIIALGLLTWISTHTLDPYRPLSRLDANRPIPADTKTLTVEVVA 138 Query: 139 LDWKWLFIYPEQGVATVNELAAPVDRPIEFRITASTVMNSFYIPALAGQIYAMPGMQTKL 198 LDWKWLFIYPEQG+ATVNELAAPVD PI F+IT+S +MNSF+IPALAGQIYAMPGMQT L Sbjct: 139 LDWKWLFIYPEQGIATVNELAAPVDMPIRFKITSSAIMNSFFIPALAGQIYAMPGMQTSL 198 Query: 199 NAVINKPGEFEGFSANYSGAGFSDMRFKFHGVSDEDFDAWVKKIKSGGGALKRTEYLALE 258 NAVIN+PGE++GFSANYSGAGFSDM+FKFHG++ E+F+ WVK K+ G L R +YL LE Sbjct: 199 NAVINRPGEYDGFSANYSGAGFSDMKFKFHGMTAENFENWVKTTKAASGKLDRADYLQLE 258 Query: 259 KPSIKDPVQHFNAVDGTLYHAILNRCVAEGQVCMDQQMMTDK 300 KPS K+PV+H+ VD +LYHAILNRC+ GQ+CMDQ M D Sbjct: 259 KPSEKEPVRHYGTVDPSLYHAILNRCIEPGQMCMDQMMAADS 300 >ref|ZP_08274761.1| Cytochrome O ubiquinol oxidase subunit II [Oxalobacteraceae bacterium IMCC9480] gb|EGF31768.1| Cytochrome O ubiquinol oxidase subunit II [Oxalobacteraceae bacterium IMCC9480] Length = 311 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/293 (73%), Positives = 244/293 (83%), Gaps = 1/293 (0%) Query: 20 GCNTVVLNPSGDIANQQGRLIIISTILMLLIIVPVIVLIGLFAWRYRQNNTAARYEPDWD 79 GCNTV+L+PSG IA QQG LI++ST+LMLLIIVPVI LI LFAWRYR++NTAA YEPDWD Sbjct: 20 GCNTVLLSPSGYIAQQQGNLIVVSTLLMLLIIVPVIALIILFAWRYRKSNTAAIYEPDWD 79 Query: 80 HSTQLELVIWGAPLLIIIALGLLTWISTHTLDPYRKLSRLDALRPIPENVKPLIVEVVAL 139 HST+LELVIWGAPLLIII LG +TWISTH LDPYR L+ +DA RPIP +PLIVEVVAL Sbjct: 80 HSTRLELVIWGAPLLIIIVLGTITWISTHKLDPYRALTHIDAARPIPAGTQPLIVEVVAL 139 Query: 140 DWKWLFIYPEQGVATVNELAAPVDRPIEFRITASTVMNSFYIPALAGQIYAMPGMQTKLN 199 DWKWLFIYP+ G+A++NELAAPVD PI F+ITASTVMNSFYIPALAGQIYAMPGMQT LN Sbjct: 140 DWKWLFIYPQLGIASLNELAAPVDVPIRFKITASTVMNSFYIPALAGQIYAMPGMQTSLN 199 Query: 200 AVINKPGEFEGFSANYSGAGFSDMRFKFHGVSDEDFDAWVKKIKSGGGALKRTEYLALEK 259 AVINKPGEF+GFSANYSGAGFSDMRFKFHG++ + FDAWV+K++S G +L R Y+ LEK Sbjct: 200 AVINKPGEFDGFSANYSGAGFSDMRFKFHGMNQQGFDAWVEKVRSQGKSLDRAGYVLLEK 259 Query: 260 PSIKDPVQHFNAVDGTLYHAILNRCVAEGQVCMDQQMMTDKNVKDEGKGEKTE 312 PS + PVQ F VD L+HAI+NRCV GQ CMD MM D + G G E Sbjct: 260 PSERVPVQRFGEVDADLFHAIVNRCVGAGQPCMDATMMKDAHAA-MGHGNAKE 311 >ref|YP_002945926.1| ubiquinol oxidase subunit II [Variovorax paradoxus S110] gb|ACS20660.1| ubiquinol oxidase, subunit II [Variovorax paradoxus S110] Length = 342 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/283 (74%), Positives = 239/283 (84%), Gaps = 1/283 (0%) Query: 20 GCNTVVLNPSGDIANQQGRLIIISTILMLLIIVPVIVLIGLFAWRYRQNNTAARYEPDWD 79 GCNTV++NPSGDIANQQGRLI++ST+LML+II+PVI L FAWRYRQ+N A Y PDWD Sbjct: 21 GCNTVLMNPSGDIANQQGRLIVVSTVLMLIIIIPVIALTLFFAWRYRQSNKEADYSPDWD 80 Query: 80 HSTQLELVIWGAPLLIIIALGLLTWISTHTLDPYRKLSRLDALRPIPENVKPLIVEVVAL 139 HSTQLEL IW APLLIIIALG +TWISTHTLDPYR LSRLDA RPIP KPL+VEVVAL Sbjct: 81 HSTQLELAIWAAPLLIIIALGAITWISTHTLDPYRPLSRLDAERPIPAEAKPLVVEVVAL 140 Query: 140 DWKWLFIYPEQGVATVNELAAPVDRPIEFRITASTVMNSFYIPALAGQIYAMPGMQTKLN 199 DWKWLFIYPEQG ATVNE+AAPVDRPI F+ITAS+VMNSF+IPALAGQIYAMPGM+TKL+ Sbjct: 141 DWKWLFIYPEQGFATVNEMAAPVDRPITFKITASSVMNSFFIPALAGQIYAMPGMETKLH 200 Query: 200 AVINKPGEFEGFSANYSGAGFSDMRFKFHGVSDEDFDAWVKKIKSG-GGALKRTEYLALE 258 AVINKPGEFEGFSANYSGAGFS MRFKFHG+S+ DFD WV+K+KSG G L R +Y LE Sbjct: 201 AVINKPGEFEGFSANYSGAGFSGMRFKFHGLSNTDFDQWVQKVKSGKDGELTREQYKKLE 260 Query: 259 KPSIKDPVQHFNAVDGTLYHAILNRCVAEGQVCMDQQMMTDKN 301 PS ++PV+H+ AV LY AILN CV ++CM + M D + Sbjct: 261 APSEREPVRHYAAVAPDLYDAILNLCVDRNKMCMKEMMAIDAD 303 >ref|YP_004156985.1| ubiquinol oxidase subunit ii [Variovorax paradoxus EPS] gb|ADU38874.1| ubiquinol oxidase, subunit II [Variovorax paradoxus EPS] Length = 341 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/299 (71%), Positives = 248/299 (82%), Gaps = 1/299 (0%) Query: 4 HLIRRGFIFLPAILLAGCNTVVLNPSGDIANQQGRLIIISTILMLLIIVPVIVLIGLFAW 63 H +RR + LP LLAGCNTV++NPSGDIANQQGRLI++ST+LML+II+PVI L FAW Sbjct: 5 HSLRRWLVLLPLALLAGCNTVLMNPSGDIANQQGRLIVVSTVLMLIIIIPVIALTIFFAW 64 Query: 64 RYRQNNTAARYEPDWDHSTQLELVIWGAPLLIIIALGLLTWISTHTLDPYRKLSRLDALR 123 RYRQ+N A Y PDWDHSTQLEL IW APLLIIIALG +TWISTHTLDPYR L+RLDA R Sbjct: 65 RYRQSNKEATYSPDWDHSTQLELAIWAAPLLIIIALGAITWISTHTLDPYRPLTRLDAKR 124 Query: 124 PIPENVKPLIVEVVALDWKWLFIYPEQGVATVNELAAPVDRPIEFRITASTVMNSFYIPA 183 I KPL+VEVVALDWKWLFIYPEQG+ATVNELAAPVD PI F+ITAS+VMNSF+IPA Sbjct: 125 QISPETKPLVVEVVALDWKWLFIYPEQGIATVNELAAPVDVPISFKITASSVMNSFFIPA 184 Query: 184 LAGQIYAMPGMQTKLNAVINKPGEFEGFSANYSGAGFSDMRFKFHGVSDEDFDAWVKKIK 243 LAGQIYAMPGM+TKL+AVINKPGEFEGFSANYSGAGFS MRFKFHG++ +DFD WV K+K Sbjct: 185 LAGQIYAMPGMETKLHAVINKPGEFEGFSANYSGAGFSGMRFKFHGLNKDDFDQWVAKVK 244 Query: 244 SGG-GALKRTEYLALEKPSIKDPVQHFNAVDGTLYHAILNRCVAEGQVCMDQQMMTDKN 301 +G G L R Y LE PS ++PV+H+ +VD LY+AILNRCV ++CM Q M D + Sbjct: 245 AGKEGELTREGYTKLEVPSEREPVRHYASVDADLYNAILNRCVDRNKMCMSQMMAIDAD 303 >ref|YP_003775871.1| cytochrome o ubiquinol oxidase subunit II protein [Herbaspirillum seropedicae SmR1] gb|ADJ63963.1| cytochrome o ubiquinol oxidase subunit II protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/283 (76%), Positives = 246/283 (86%) Query: 21 CNTVVLNPSGDIANQQGRLIIISTILMLLIIVPVIVLIGLFAWRYRQNNTAARYEPDWDH 80 CNTVV+NPSGDIANQQ RLIIIST LMLLIIVPVI+L LFAWRYR++NT+A YEPDWDH Sbjct: 21 CNTVVMNPSGDIANQQARLIIISTALMLLIIVPVIILTLLFAWRYRKSNTSAPYEPDWDH 80 Query: 81 STQLELVIWGAPLLIIIALGLLTWISTHTLDPYRKLSRLDALRPIPENVKPLIVEVVALD 140 ST+LELVIWGAPLLIIIALGLLTWI+THTLDPYR LSR+DA RP+ VKPL+VEVVALD Sbjct: 81 STRLELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPLSPQVKPLVVEVVALD 140 Query: 141 WKWLFIYPEQGVATVNELAAPVDRPIEFRITASTVMNSFYIPALAGQIYAMPGMQTKLNA 200 WKWLFIYPEQG+ATVNELAAPVD PI+F+ITAS+VMNSFYIPALAGQIYAMPGM+TKL+A Sbjct: 141 WKWLFIYPEQGIATVNELAAPVDVPIQFKITASSVMNSFYIPALAGQIYAMPGMETKLHA 200 Query: 201 VINKPGEFEGFSANYSGAGFSDMRFKFHGVSDEDFDAWVKKIKSGGGALKRTEYLALEKP 260 VINK GE+EGFSANYSGAGFS MRFKFHG+ FDAWV+K K+G G L R EYL LE+P Sbjct: 201 VINKAGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAGSGKLDRAEYLKLEQP 260 Query: 261 SIKDPVQHFNAVDGTLYHAILNRCVAEGQVCMDQQMMTDKNVK 303 S ++P + + + L+HAI+NRCVA VCMD+ M TD NVK Sbjct: 261 SEREPARLIGSTEPNLFHAIVNRCVAPNTVCMDKMMATDLNVK 303