BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0006.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004682382.1| sulfite dehydrogenase SoxC [Cupriavidus neca... 530 e-148 ref|YP_002008627.1| aliphatic sulfonates transporter, periplasmi... 528 e-148 ref|YP_841735.1| ABC transporter periplasmic protein [Ralstonia ... 435 e-120 ref|YP_001611959.1| ABC transporter substrate-binding protein [S... 380 e-103 ref|YP_558861.1| ABC sulfate ester transporter, periplasmic liga... 372 e-101 >ref|YP_004682382.1| sulfite dehydrogenase SoxC [Cupriavidus necator N-1] gb|AEI81150.1| taurine ABC transport system permease protein TauT family [Cupriavidus necator N-1] Length = 376 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 244/363 (67%), Positives = 308/363 (84%), Gaps = 3/363 (0%) Query: 2 TLDRRTVLKQLAAGGVGVGTAMLGLQARAAN---KPAIIRIGVAQPGIGNPPQFSGSSAA 58 TL RR +L+ +A G+G+ ++ L A +A+ +P +IR+GVAQP G PP F+GSS A Sbjct: 13 TLTRRELLRCVAWSGLGMAASLSPLSAFSASPAARPDVIRVGVAQPATGTPPSFAGSSLA 72 Query: 59 VANAKGWVEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKT 118 +A+A+GW+EE FK G +VEWFFFKGAGPAVNEAL+N+QLDFA QGDLPSIVA+SAGLKT Sbjct: 73 IAHARGWLEESFKPTGTRVEWFFFKGAGPAVNEALANRQLDFALQGDLPSIVARSAGLKT 132 Query: 119 RLILATGVRSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLR 178 RL+LATGVR+NIY+ VPPDSP+++V DLRGKRV++FKGTN LP R+LEANGL ++DLR Sbjct: 133 RLVLATGVRANIYVGVPPDSPLKTVSDLRGKRVSLFKGTNMHLPALRLLEANGLSDKDLR 192 Query: 179 AINLDQATTLAALSTKDIDAAFGNINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTEE 238 +NLD A LAALST+DIDAA G +++LRLRDK A RI+YSSK SPI+T QSHVLV++E Sbjct: 193 LLNLDTAGYLAALSTRDIDAAIGAMDILRLRDKGAVRILYSSKNQSPIYTRQSHVLVSDE 252 Query: 239 FAQQYPEITARVVKTFVKTSKWASDEVNREEVLRLWAKAGTPYEHWREDYDGQPLRVRIN 298 FA +YPE T +VK V+ ++WASDE +REEVLR WA+AGTPY+HW+ED+DG+PLRVR+N Sbjct: 253 FAGRYPEATQHLVKAAVEAARWASDESHREEVLRTWARAGTPYDHWKEDFDGEPLRVRLN 312 Query: 299 PNFDPFLVARYKDSVEQAYRLKLSRSKFDVDQWIDQRYLKAALKELNLETYWPIFQVNGK 358 PNFDPFLV+RYKD+VEQAYR KLSR++FDVDQWIDQR+LKAAL +L+L++YWP++Q NGK Sbjct: 313 PNFDPFLVSRYKDAVEQAYRFKLSRARFDVDQWIDQRFLKAALTDLSLQSYWPVYQPNGK 372 Query: 359 ILG 361 ILG Sbjct: 373 ILG 375 >ref|YP_002008627.1| aliphatic sulfonates transporter, periplasmic binding component [Cupriavidus taiwanensis LMG 19424] emb|CAQ72575.1| Putative aliphatic sulfonates transporter, periplasmic binding component [Cupriavidus taiwanensis LMG 19424] Length = 376 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 243/363 (66%), Positives = 307/363 (84%), Gaps = 3/363 (0%) Query: 2 TLDRRTVLKQLAAGGVGVGTAMLGLQARAAN---KPAIIRIGVAQPGIGNPPQFSGSSAA 58 TL RR +L+ A G+G+ ++ L A +A+ +P +IR+GVAQP G PP F+GSS A Sbjct: 13 TLTRRELLRCAAWSGLGMAASLSPLSAFSASPAARPDVIRVGVAQPATGTPPSFAGSSLA 72 Query: 59 VANAKGWVEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKT 118 +A+A+GW+EE FK G +VEWFFFKGAGPAVNEAL+N+QLDFA QGDLPSIVA+SAGLKT Sbjct: 73 IAHARGWLEESFKPTGTRVEWFFFKGAGPAVNEALANRQLDFALQGDLPSIVARSAGLKT 132 Query: 119 RLILATGVRSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLR 178 RL+LATGVR+NIY+ VPPDSP+++V DLRGKRV++FKGTN LP R+LEANGL ++DLR Sbjct: 133 RLVLATGVRANIYVGVPPDSPLKTVSDLRGKRVSLFKGTNMHLPALRLLEANGLSDKDLR 192 Query: 179 AINLDQATTLAALSTKDIDAAFGNINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTEE 238 +NLD A LAALST+DIDAA G +++LRLRDK A RI+YSSK SPI+T QSHVLV++E Sbjct: 193 LLNLDTAGYLAALSTRDIDAAIGAMDILRLRDKGAVRILYSSKNQSPIYTRQSHVLVSDE 252 Query: 239 FAQQYPEITARVVKTFVKTSKWASDEVNREEVLRLWAKAGTPYEHWREDYDGQPLRVRIN 298 FA +YPE T +VK V+ ++WASDE +REEVLR WA+AGTPY+HW+ED+DG+PLRVR+N Sbjct: 253 FAGRYPEATQHLVKAAVEAARWASDESHREEVLRTWARAGTPYDHWKEDFDGEPLRVRLN 312 Query: 299 PNFDPFLVARYKDSVEQAYRLKLSRSKFDVDQWIDQRYLKAALKELNLETYWPIFQVNGK 358 PNFDPFLV+RYKD+VEQAYR KLSR++FDVDQWIDQR+LKAAL +L+L++YWP++Q NGK Sbjct: 313 PNFDPFLVSRYKDAVEQAYRFKLSRARFDVDQWIDQRFLKAALNDLSLQSYWPVYQPNGK 372 Query: 359 ILG 361 I+G Sbjct: 373 IMG 375 >ref|YP_841735.1| ABC transporter periplasmic protein [Ralstonia eutropha H16] emb|CAJ97005.1| ABC-type transporter, periplasmic component: TauT family [Ralstonia eutropha H16] Length = 334 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 203/310 (65%), Positives = 257/310 (82%), Gaps = 3/310 (0%) Query: 2 TLDRRTVLKQLAAGGVGVGTAMLGLQARAAN---KPAIIRIGVAQPGIGNPPQFSGSSAA 58 TL RR +L+ A G+G+ ++ L A +A+ +P +IR+GVAQP G PP F+GSS A Sbjct: 13 TLTRRELLRCAAWSGLGMAASLSPLSAFSASPAARPDVIRVGVAQPATGTPPGFAGSSLA 72 Query: 59 VANAKGWVEEEFKADGIKVEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKT 118 +A+A+GW+EE FK G +VEWFFFKGAGPAVNEAL+N+QLDFA QGDLPSIVA+SAGLKT Sbjct: 73 IAHARGWLEESFKPTGTRVEWFFFKGAGPAVNEALANRQLDFALQGDLPSIVARSAGLKT 132 Query: 119 RLILATGVRSNIYLAVPPDSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLR 178 RL+LATGVR+NIY+ VPPDSP+++V DLRGKRV++FKGTN LP R+LEANGL ++DLR Sbjct: 133 RLVLATGVRANIYVGVPPDSPLKTVSDLRGKRVSLFKGTNMHLPALRLLEANGLSDKDLR 192 Query: 179 AINLDQATTLAALSTKDIDAAFGNINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTEE 238 +NLD A LAALST+DIDAA G +++LRLRDK A RI+YSSK SPI+T QSHVLV+++ Sbjct: 193 LLNLDTAGYLAALSTRDIDAAIGAMDILRLRDKGAVRILYSSKNQSPIYTRQSHVLVSDD 252 Query: 239 FAQQYPEITARVVKTFVKTSKWASDEVNREEVLRLWAKAGTPYEHWREDYDGQPLRVRIN 298 FA +YPE T +VK V+ ++WASDE +REEVLR WA+AGTPY+HW+ED+DG+PLRVR+N Sbjct: 253 FAGRYPEATQHLVKAAVEAARWASDESHREEVLRTWARAGTPYDHWKEDFDGEPLRVRLN 312 Query: 299 PNFDPFLVAR 308 PNFDPFLV+R Sbjct: 313 PNFDPFLVSR 322 >ref|YP_001611959.1| ABC transporter substrate-binding protein [Sorangium cellulosum 'So ce 56'] emb|CAN91479.1| ABC transporter substrate-binding protein [Sorangium cellulosum 'So ce 56'] Length = 360 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 183/341 (53%), Positives = 243/341 (71%), Gaps = 3/341 (0%) Query: 22 AMLGLQARAA--NKPAIIRIGVAQPGIGNPPQFSGSSAAVANAKGWVEEEFKADGIKVEW 79 A+L L A A P++IR+ A GIGN P GSS +V +A+G +EEEFK D IK+EW Sbjct: 14 AILTLTAHGARAEAPSVIRVAFAGVGIGNRPFVGGSSLSVVHARGLLEEEFKKDNIKIEW 73 Query: 80 FFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKTRLILATGVRSNIYLAVPPDSP 139 FFKGAGPAVNEA +N+ LDFA QGDLPS + ++ GLKT+L+ + YLAVP DS Sbjct: 74 SFFKGAGPAVNEAYANRLLDFALQGDLPSSIGRAGGLKTKLLAGVSTMQHTYLAVPADSS 133 Query: 140 IQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLRAINLDQATTLAALSTKDIDAA 199 I S+ DL+GK+VA+FKGTN QL +N++L +GL ERDLR +N+D AT AAL+T+DIDAA Sbjct: 134 IASLADLKGKKVALFKGTNLQLAVNKILAGSGLSERDLRILNMDSATAKAALATRDIDAA 193 Query: 200 FGNINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTEEFAQQYPEITARVVKTFVKTSK 259 FG +LL L+D+ A+IVYS+K SP + +H++VTE+FA +YP+IT RVVK V+ + Sbjct: 194 FGGYDLLTLQDQGVAKIVYSTKNDSPAYLRHAHLIVTEDFANKYPDITRRVVKVVVQAAH 253 Query: 260 W-ASDEVNREEVLRLWAKAGTPYEHWREDYDGQPLRVRINPNFDPFLVARYKDSVEQAYR 318 W A +E N + +LW+K+G PY +++ D G L+VR +P FD +L++RYK +V A R Sbjct: 254 WIAQNEANPAPIYQLWSKSGVPYSNFKADQTGDSLKVRASPLFDEYLISRYKAAVADAKR 313 Query: 319 LKLSRSKFDVDQWIDQRYLKAALKELNLETYWPIFQVNGKI 359 L R+ FDVD WID R+L AALKELNLE YWP F NGK+ Sbjct: 314 FGLIRNTFDVDSWIDLRFLNAALKELNLEGYWPEFDANGKV 354 >ref|YP_558861.1| ABC sulfate ester transporter, periplasmic ligand binding protein [Burkholderia xenovorans LB400] gb|ABE30809.1| ABC sulfate ester transporter, periplasmic ligand binding protein [Burkholderia xenovorans LB400] Length = 355 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 178/344 (51%), Positives = 242/344 (70%) Query: 17 VGVGTAMLGLQARAANKPAIIRIGVAQPGIGNPPQFSGSSAAVANAKGWVEEEFKADGIK 76 V V T L A+KPA+IRIGVAQ G G+PP F GS AA + +E+EF ADGIK Sbjct: 11 VAVATLSLAAAHAYADKPAVIRIGVAQQGTGDPPSFGGSPAATVQLQQSLEKEFAADGIK 70 Query: 77 VEWFFFKGAGPAVNEALSNKQLDFAFQGDLPSIVAKSAGLKTRLILATGVRSNIYLAVPP 136 VEW FFKGAGPAVNEA+++K LDFAFQGDLP+++A++ GLKT L+LA+GVR+ I +AVP Sbjct: 71 VEWLFFKGAGPAVNEAIADKSLDFAFQGDLPAVLARANGLKTHLLLASGVRTGIKIAVPA 130 Query: 137 DSPIQSVKDLRGKRVAIFKGTNAQLPINRVLEANGLQERDLRAINLDQATTLAALSTKDI 196 DS + S+KDL+G+RV+IF+GTN QL + L AN L ERDLR INLD A++LAAL++K I Sbjct: 131 DSDVHSIKDLKGRRVSIFRGTNLQLVADNALAANQLNERDLRVINLDTASSLAALASKGI 190 Query: 197 DAAFGNINLLRLRDKNAARIVYSSKGGSPIFTTQSHVLVTEEFAQQYPEITARVVKTFVK 256 DA+ + ++ +LRD+ A++VY S+ P FT QSH+LV ++F +P+I RVV FVK Sbjct: 191 DASVNDYHVYKLRDQGLAKVVYESQNDGPQFTRQSHLLVLDDFDHAHPDIVQRVVNVFVK 250 Query: 257 TSKWASDEVNREEVLRLWAKAGTPYEHWREDYDGQPLRVRINPNFDPFLVARYKDSVEQA 316 ++W+SDE NR+ + +LWAK+G Y W+ ++ Q L+ R +P DPF+VARYK + A Sbjct: 251 GAQWSSDEANRDALFKLWAKSGVSYSSWQAEFANQSLKERNSPLIDPFIVARYKAVADDA 310 Query: 317 YRLKLSRSKFDVDQWIDQRYLKAALKELNLETYWPIFQVNGKIL 360 +LKL R +VD W + +YL AL+ L+ YW + GK L Sbjct: 311 LKLKLIRQPVEVDGWFETKYLDNALRAQKLDHYWTRYDAAGKPL 354