BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0195.p         (43 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IY11.1 D8IY11_HERSS Lipoprotein                                      71   4e-11

>D8IY11.1 D8IY11_HERSS Lipoprotein
          Length = 398

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 38/43 (88%)

Query: 1   MEAVVVNGLYRLYAGPYATRPAAMDAAQIVRQRSSVTPFVVER 43
           M+AV VNGLYRLYAGPY TRPAA +AA +VRQRS+ TPF+VER
Sbjct: 356 MQAVQVNGLYRLYAGPYPTRPAAQNAAMLVRQRSAGTPFIVER 398