BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0181.p (371 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9B6V3.1 B9B6V3_9BURK Putative periplasmic substrate-binding pro... 361 9e-98 F2LKA8.1 F2LKA8_BURGA Extracellular ligand-binding receptor 361 1e-97 B9C389.1 B9C389_9BURK Putative periplasmic substrate-binding pro... 361 1e-97 B9BJ81.1 B9BJ81_9BURK Putative periplasmic substrate-binding pro... 361 1e-97 F0FYU7.1 F0FYU7_9BURK ABC-type branched-chain amino acid transpo... 360 2e-97 >B9B6V3.1 B9B6V3_9BURK Putative periplasmic substrate-binding protein Length = 388 Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 184/369 (49%), Positives = 249/369 (67%), Gaps = 7/369 (1%) Query: 2 VLAGLLTAPLQAASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRP 61 V AG +AP + + IG A PL+G SA++G+ +LA+ + NA+ ++GG+P Sbjct: 21 VTAGAQSAP-------QTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKP 73 Query: 62 LLFKLLTQDDRGDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGS 121 +++KL+ DD+ D TA VA LV V+ V+GHWNTG S+PA+ +Y AGIPQIAP S Sbjct: 74 VMYKLVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPAS 133 Query: 122 TGRQYTQNGYADSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQG 181 TG QYTQ GYA +FRI+GHDD GG + A+A++ LKA+RIAVI D T FGA LA+QF +G Sbjct: 134 TGHQYTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKG 193 Query: 182 LQDKGSAVVTQQTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNAT 241 +Q G +V +Q ++ KT+DF+ LTA++ ADL+FFGGL QAA + MR GVNA Sbjct: 194 VQANGGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAP 253 Query: 242 LLAADGIVSPTFLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFA 301 LL A G VS TFL L G DG+G + PG E+M G K F ++ + + PIEL APFA Sbjct: 254 LLGAGGFVSQTFLSLAGKDGDGVTALEPGLPLERMPGGKAFDAQYQSRFRAPIELHAPFA 313 Query: 302 YDAAYAIAAAIQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGK 361 YDAA + AA Q+A + +P ++ A++ ++ G+TG IAFD EGNL NPA+T+Y+VRGGK Sbjct: 314 YDAAATLIAAAQKAGTTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGGK 373 Query: 362 WTPVQTFGG 370 WT V GG Sbjct: 374 WTVVDVLGG 382 >F2LKA8.1 F2LKA8_BURGA Extracellular ligand-binding receptor Length = 399 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 178/359 (49%), Positives = 242/359 (67%) Query: 12 QAASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRPLLFKLLTQDD 71 AA + V IG A PL+G SA++G+ +LAL + N R ++ G+P+++KL+ DD Sbjct: 31 HAADAPQTVLIGLAAPLTGPSARIGKDLQNGAQLALDDANRRHPTIDGKPVVYKLVAVDD 90 Query: 72 RGDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGSTGRQYTQNGY 131 + D TA VA LV V+ V+GHWNTG S+PAA +Y AGIP+IAP STG QYTQ GY Sbjct: 91 QSDPRTAVTVAQDLVEQHVIGVVGHWNTGCSVPAARVYRDAGIPEIAPASTGHQYTQQGY 150 Query: 132 ADSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQGLQDKGSAVVT 191 A +FRI+GHDD GG Y A+A++ L ARRIAV+ D T FG+ LA+QF +G++ G +V Sbjct: 151 ATAFRIMGHDDTGGAYTGAYAVKTLHARRIAVLDDRTSFGSGLADQFVKGVEANGGTIVD 210 Query: 192 QQTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNATLLAADGIVSP 251 +Q ++ KT+DF+ LTA+++ DL+FFGGL QAA + M G++ATLL A G VS Sbjct: 211 RQYVTDKTTDFSGVLTAIKSKRPDLVFFGGLDAQAAPIARRMHQLGIDATLLGAGGFVSQ 270 Query: 252 TFLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFAYDAAYAIAAA 311 TFL L G DGEG + PG+ KM G F ++ A Y PIEL APFAYDAA + A Sbjct: 271 TFLSLAGKDGEGVTALEPGRPLAKMPGGPAFDAQYRARYHAPIELHAPFAYDAAATLIAV 330 Query: 312 IQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGKWTPVQTFGG 370 +Q+ S +P ++ A+LH++ +G+TG IAFD +GNL +PAYT+YRV+GGKW+ V GG Sbjct: 331 AEQSKSTDPAKLVAALHKVDRQGVTGRIAFDEQGNLKDPAYTIYRVQGGKWSVVDVLGG 389 >B9C389.1 B9C389_9BURK Putative periplasmic substrate-binding protein Length = 388 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 185/369 (50%), Positives = 248/369 (67%), Gaps = 7/369 (1%) Query: 2 VLAGLLTAPLQAASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRP 61 V AG +AP + + IG A PL+G SA++G+ +LA+ + NA+ ++GG+P Sbjct: 21 VTAGAQSAP-------QTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKP 73 Query: 62 LLFKLLTQDDRGDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGS 121 +++KL+ DD+ D TA VA LV V+ V+GHWNTG S+PA+ +Y AGIPQIAP S Sbjct: 74 VVYKLVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPAS 133 Query: 122 TGRQYTQNGYADSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQG 181 TG QYTQ GYA +FRI+GHDD GG + A+A++ LKA+RIAVI D T FGA LA+QF +G Sbjct: 134 TGHQYTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKG 193 Query: 182 LQDKGSAVVTQQTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNAT 241 +Q G +V +Q ++ KT+DF+ LTA++ ADL+FFGGL QAA + MR GVN Sbjct: 194 VQANGGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNVP 253 Query: 242 LLAADGIVSPTFLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFA 301 LL A G VS TFL L G DG+G + PG E+M G K F ++ A + PIEL APFA Sbjct: 254 LLGAGGFVSQTFLSLAGKDGDGVTALEPGLPLERMPGGKAFDAQYQARFRAPIELHAPFA 313 Query: 302 YDAAYAIAAAIQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGK 361 YDAA + AA Q+A S +P ++ A++ ++ G+TG IAFD EGNL NPA+T+Y+VRGGK Sbjct: 314 YDAAATLIAAAQKAGSTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGGK 373 Query: 362 WTPVQTFGG 370 WT V GG Sbjct: 374 WTVVDVLGG 382 >B9BJ81.1 B9BJ81_9BURK Putative periplasmic substrate-binding protein Length = 388 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 185/369 (50%), Positives = 248/369 (67%), Gaps = 7/369 (1%) Query: 2 VLAGLLTAPLQAASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRP 61 V AG +AP + + IG A PL+G SA++G+ +LA+ + NA+ ++GG+P Sbjct: 21 VTAGAQSAP-------QTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKP 73 Query: 62 LLFKLLTQDDRGDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGS 121 +++KL+ DD+ D TA VA LV V+ V+GHWNTG S+PA+ +Y AGIPQIAP S Sbjct: 74 VVYKLVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPAS 133 Query: 122 TGRQYTQNGYADSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQG 181 TG QYTQ GYA +FRI+GHDD GG + A+A++ LKA+RIAVI D T FGA LA+QF +G Sbjct: 134 TGHQYTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKG 193 Query: 182 LQDKGSAVVTQQTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNAT 241 +Q G +V +Q ++ KT+DF+ LTA++ ADL+FFGGL QAA + MR GVN Sbjct: 194 VQANGGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNVP 253 Query: 242 LLAADGIVSPTFLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFA 301 LL A G VS TFL L G DG+G + PG E+M G K F ++ A + PIEL APFA Sbjct: 254 LLGAGGFVSQTFLSLAGKDGDGVTALEPGLPLERMPGGKAFDAQYQARFRAPIELHAPFA 313 Query: 302 YDAAYAIAAAIQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGK 361 YDAA + AA Q+A S +P ++ A++ ++ G+TG IAFD EGNL NPA+T+Y+VRGGK Sbjct: 314 YDAAATLIAAAQKAGSTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGGK 373 Query: 362 WTPVQTFGG 370 WT V GG Sbjct: 374 WTVVDVLGG 382 >F0FYU7.1 F0FYU7_9BURK ABC-type branched-chain amino acid transport system periplasmic component Length = 388 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 182/365 (49%), Positives = 248/365 (67%) Query: 6 LLTAPLQAASDVRLVQIGFAGPLSGSSAQMGRSQVQAVELALAELNARGISVGGRPLLFK 65 + + P A S + + IG A PL+G SA++G+ +LA+ + NA+ ++GG+P+++K Sbjct: 18 IASVPAFAQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKPVVYK 77 Query: 66 LLTQDDRGDIHTATLVANYLVRSEVVAVIGHWNTGASIPAAHIYHAAGIPQIAPGSTGRQ 125 L+ DD+ D TA VA LV V+ V+GHWNTG S+PA+ +Y AGIPQIAP STG Q Sbjct: 78 LVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPASTGHQ 137 Query: 126 YTQNGYADSFRIVGHDDDGGRYASAFALQQLKARRIAVIHDDTGFGAMLANQFRQGLQDK 185 YTQ GYA +FRI+GHDD GG + A+A++ LKA+RIAVI D T FGA LA+QF +G+Q Sbjct: 138 YTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQAN 197 Query: 186 GSAVVTQQTISSKTSDFNAALTAVRNTDADLIFFGGLGPQAAALKLAMRHAGVNATLLAA 245 G +V +Q ++ KT+DF+ LTA++ ADL+FFGGL QAA + MR GVNA LL A Sbjct: 198 GGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGA 257 Query: 246 DGIVSPTFLRLTGADGEGTFGIAPGQAQEKMAGWKKFQDKFAATYGGPIELFAPFAYDAA 305 G VS TFL L G DG+G + PG ++M G K F ++ A + PIEL APFAYDAA Sbjct: 258 GGFVSQTFLSLAGKDGDGVPALEPGLPLDRMPGGKAFDAQYQARFRAPIELHAPFAYDAA 317 Query: 306 YAIAAAIQQADSLEPRRIAASLHQLKYKGLTGTIAFDGEGNLLNPAYTVYRVRGGKWTPV 365 + AA Q+A + +P ++ A++ ++ G+TG IAFD EGNL NPA+T+Y+VRGGKWT V Sbjct: 318 ATLIAAAQKAGTTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGGKWTVV 377 Query: 366 QTFGG 370 GG Sbjct: 378 DVLGG 382