BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0118.p (195 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D3W8I6.1 D3W8I6_9ZZZZ Hypothetical ABC transporter permease protein 242 2e-62 B4WPV3.1 B4WPV3_9SYNE ABC transporter, permease protein, putative 238 4e-61 Q2J018.1 Q2J018_RHOP2 Binding-protein-dependent transport system... 230 7e-59 Q89I36.1 Q89I36_BRAJA ABC transporter permease protein 224 5e-57 D0D1N2.1 D0D1N2_9RHOB ABC transporter, membrane subunit 176 2e-42 >D3W8I6.1 D3W8I6_9ZZZZ Hypothetical ABC transporter permease protein Length = 230 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/193 (63%), Positives = 150/193 (77%) Query: 2 NTGWSIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWF 61 + G S RV +G+ GAAV ++IG+LTG AI+S LTPIFQLLRPIPPIAFVPIVI+WF Sbjct: 38 DLGMSTMRVAVGFFTGAAVAILIGLLTGRYAIVSNFLTPIFQLLRPIPPIAFVPIVILWF 97 Query: 62 GLTELGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPV 121 GL E KWFLVFWGVFFTVW+ATH+GVQR L+RAA SLG + L+ V P ALP Sbjct: 98 GLAEWRKWFLVFWGVFFTVWVATHLGVQRADPALIRAAHSLGVSDRLLIRDVIFPSALPT 157 Query: 122 IFVGLRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDR 181 IFVGLRT++SI+FYTLVAAELAGA+AG+AYR+++ QNMQ M+ GL++LG +S ++DR Sbjct: 158 IFVGLRTAISISFYTLVAAELAGAFAGLAYRIDLAHQNMQTSQMLGGLVMLGLVSALADR 217 Query: 182 LFQSASRRLLHWS 194 F SRRL+ WS Sbjct: 218 GFAMLSRRLVWWS 230 >B4WPV3.1 B4WPV3_9SYNE ABC transporter, permease protein, putative Length = 255 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 118/189 (62%), Positives = 157/189 (83%) Query: 6 SIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWFGLTE 65 S++RVV+G+ GA GV +GVLTG +++ LLTP+FQLLRPIPPIAFVPIVI+WFGL+E Sbjct: 67 SLSRVVVGFMSGAIAGVFVGVLTGQYQLVANLLTPVFQLLRPIPPIAFVPIVILWFGLSE 126 Query: 66 LGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPVIFVG 125 LGKWFLVFWGVFFTVW+A H+GVQRV + L+RAAQ LG Q+L + LP +LP IFVG Sbjct: 127 LGKWFLVFWGVFFTVWIAAHLGVQRVDKNLIRAAQCLGTPEKQMLPQILLPGSLPYIFVG 186 Query: 126 LRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDRLFQS 185 LRTS+SI+FYTLVAAELAG ++GIAYR++++QQN+Q+G + GL++LG IS ++D+ F + Sbjct: 187 LRTSISISFYTLVAAELAGTFSGIAYRIDISQQNLQVGKSLGGLIILGLISAIADKGFDA 246 Query: 186 ASRRLLHWS 194 S++L+ W+ Sbjct: 247 VSKKLVWWT 255 >Q2J018.1 Q2J018_RHOP2 Binding-protein-dependent transport systems inner membrane component Length = 253 Score = 230 bits (587), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 116/192 (60%), Positives = 151/192 (78%) Query: 2 NTGWSIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWF 61 + +S+ARVV GY +GA++GVV GVLTG ++S L +P+F +LRPIPPIAFVPIVI+WF Sbjct: 61 DLAYSVARVVSGYLLGASIGVVFGVLTGQFQMISSLFSPVFHILRPIPPIAFVPIVILWF 120 Query: 62 GLTELGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPV 121 GL+E GK FLVFWGVFFTVWL TH+GVQ++ L+RAA LG R ++L + L ALP Sbjct: 121 GLSETGKIFLVFWGVFFTVWLTTHIGVQKIDRGLIRAALMLGTPRRRMLTEIVLFGALPY 180 Query: 122 IFVGLRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDR 181 I VGLRT++SI+FYTLVAAELAGA+AGI YR+E+ QQN+Q G +M GL+ LG IS ++DR Sbjct: 181 IAVGLRTAVSISFYTLVAAELAGAFAGIVYRIEIAQQNLQTGQVMGGLVALGAISFLADR 240 Query: 182 LFQSASRRLLHW 193 F + ++RL+ W Sbjct: 241 GFSALTQRLVWW 252 >Q89I36.1 Q89I36_BRAJA ABC transporter permease protein Length = 282 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 112/188 (59%), Positives = 145/188 (77%) Query: 6 SIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWFGLTE 65 S+ RV G+ VG A+G+++G+LTG ++S LL+P+F +LRPIPPIAFVPIVI+WFGL+E Sbjct: 94 SLFRVTTGFIVGGALGILLGILTGQFPVISSLLSPLFHILRPIPPIAFVPIVILWFGLSE 153 Query: 66 LGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPVIFVG 125 GK FLV WGVFFTVWL+TH+GVQ+V L+RAA LG R Q+L + L ALP I VG Sbjct: 154 AGKLFLVVWGVFFTVWLSTHIGVQKVDRGLIRAALMLGTPRRQMLQEIVLLGALPYIVVG 213 Query: 126 LRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDRLFQS 185 LRT++SI+FYTLVAAELAG +AGI YR+E+ QQN+Q G +M GL LG IS ++DRLF + Sbjct: 214 LRTAVSISFYTLVAAELAGTFAGIVYRIEIAQQNLQTGQVMGGLAALGLISFIADRLFSA 273 Query: 186 ASRRLLHW 193 + R + W Sbjct: 274 LAERTVWW 281 >D0D1N2.1 D0D1N2_9RHOB ABC transporter, membrane subunit Length = 274 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 131/193 (67%) Query: 2 NTGWSIARVVIGYSVGAAVGVVIGVLTGGSAILSGLLTPIFQLLRPIPPIAFVPIVIVWF 61 + G S+ R +G+++GA +GV +G+LTG A++ LL P LLRPIP IA VP+ IVWF Sbjct: 80 DLGVSLGRAGVGFAIGATLGVTMGLLTGRVALVRTLLNPFLNLLRPIPAIALVPVAIVWF 139 Query: 62 GLTELGKWFLVFWGVFFTVWLATHMGVQRVTETLVRAAQSLGATRWQLLWTVQLPDALPV 121 G+ E K+F+V + VF TVW TH G+Q V ET +RAA+SLGA+R + TV LP A P Sbjct: 140 GIGEGSKYFVVSYTVFLTVWFNTHHGMQYVPETYLRAARSLGASRLREFLTVVLPAAAPH 199 Query: 122 IFVGLRTSLSIAFYTLVAAELAGAYAGIAYRLEVTQQNMQIGHMMAGLLVLGFISTVSDR 181 IF G+R +++AF +LVAAEL+GA +G+ +RL+ +Q ++ M + L++LG + V+D Sbjct: 200 IFAGIRLGVALAFLSLVAAELSGASSGLGFRLQEARQYIRTDRMFSLLIILGILGAVADL 259 Query: 182 LFQSASRRLLHWS 194 + R+L+HW Sbjct: 260 VVHRIGRKLVHWE 272