BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0110.p         (294 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

E6UZG3.1 E6UZG3_VARPD Binding-protein-dependent transport system...   376   e-102
Q3KBF6.1 Q3KBF6_PSEPF Putative transport system permease              366   3e-99
Q88RC4.1 Q88RC4_PSEPK Nitrate ABC transporter, permease protein,...   364   7e-99
B1JEV3.1 B1JEV3_PSEPW Binding-protein-dependent transport system...   340   1e-91
Q1BHD8.1 Q1BHD8_BURCA Binding-protein-dependent transport system...   336   2e-90

>E6UZG3.1 E6UZG3_VARPD Binding-protein-dependent transport systems inner
           membrane component
          Length = 268

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/265 (69%), Positives = 219/265 (82%), Gaps = 8/265 (3%)

Query: 38  LHNWLHHGLR--------LASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWAL 89
           + N LH  LR        +A++ +C+L W  A+   +NLG ITFQNVP P+EV ++AW+L
Sbjct: 1   MTNSLHSNLRAMPRATWRIAALLLCVLAWHLATRERMNLGFITFQNVPPPREVAESAWSL 60

Query: 90  AQSPRLLSHLSASLYRVFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAW 149
            QSP +L HLSASL RVF GF +AA+AG+ LG+ IGR RW  D LLPPLE+LRPIPAVAW
Sbjct: 61  VQSPLVLQHLSASLRRVFIGFGLAAIAGVALGLAIGRARWAEDTLLPPLEVLRPIPAVAW 120

Query: 150 IPLAILMFPSSEISMIYITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEV 209
           IPLAILMFPSSE SM++ITFIGALFP+LLNT+HGVE VDARL+ASARSLG+GR A+F EV
Sbjct: 121 IPLAILMFPSSEASMVFITFIGALFPVLLNTVHGVEAVDARLVASARSLGAGRLAVFREV 180

Query: 210 ILPAAAPSIVTGLSIGMGTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIG 269
           ILP A PS+VTGL+IGMGTAWFCLVTAEMI+GQFGIGYYTW SYTIQNYADI+VGMLFIG
Sbjct: 181 ILPGALPSVVTGLAIGMGTAWFCLVTAEMISGQFGIGYYTWMSYTIQNYADIVVGMLFIG 240

Query: 270 VMGMGSSALIKKLGGLLMPWYLLQR 294
           V+GMGSSAL++++G  LMPW  +Q 
Sbjct: 241 VLGMGSSALVRRVGQSLMPWRAVQE 265


>Q3KBF6.1 Q3KBF6_PSEPF Putative transport system permease
          Length = 274

 Score =  366 bits (939), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 179/244 (73%), Positives = 209/244 (85%)

Query: 47  RLASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYRV 106
           R  S+A CLL WQ A++ H NLGL+TF NVP+P  V++AA  L  S +L+ HLSASL RV
Sbjct: 25  RATSIAFCLLFWQLAASHHWNLGLVTFANVPTPLAVIEAALGLGDSGKLIQHLSASLGRV 84

Query: 107 FAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMIY 166
           FAG++ A + GI LG+ IGR +W  D+LLPPLE+LRPIPAVAWIPLAILMFPSSE+SM++
Sbjct: 85  FAGYLAALVIGIALGLAIGRSKWAEDLLLPPLEVLRPIPAVAWIPLAILMFPSSELSMVF 144

Query: 167 ITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIGM 226
           ITF GALFPILLNT+HGVEGVD RLIASA+SLG+GRRAI  EVILP AAPSI+TGL+IGM
Sbjct: 145 ITFTGALFPILLNTVHGVEGVDPRLIASAKSLGAGRRAILLEVILPGAAPSIITGLAIGM 204

Query: 227 GTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGLL 286
           GT+WFCLVTAEMI+GQFGIGYYTW SYTIQNYADI+VGML IGV+GMGSS LIK+LGGL 
Sbjct: 205 GTSWFCLVTAEMISGQFGIGYYTWESYTIQNYADIVVGMLLIGVLGMGSSLLIKRLGGLF 264

Query: 287 MPWY 290
            PW+
Sbjct: 265 TPWH 268


>Q88RC4.1 Q88RC4_PSEPK Nitrate ABC transporter, permease protein, putative
          Length = 260

 Score =  364 bits (935), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 178/249 (71%), Positives = 208/249 (83%)

Query: 46  LRLASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYR 105
           +RLAS+  CLL WQ A+ V ++LGL+TF  VP+PK VL AAW L  S  LL+HL +SL R
Sbjct: 10  VRLASLLACLLFWQVAANVKMDLGLLTFTYVPTPKAVLDAAWQLLTSSTLLAHLGSSLAR 69

Query: 106 VFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMI 165
           VFAG+  AAL G+ LG+LIGR +W  D LLPPLE+LRPIPAVAWIPLAILMFPSSE+SM+
Sbjct: 70  VFAGYATAALVGVALGLLIGRSKWAEDTLLPPLEVLRPIPAVAWIPLAILMFPSSELSMV 129

Query: 166 YITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIG 225
           +ITF GALFPILLNT+HGVE VD RL+ASARSLG+GR AI  EV+LP A PSIVTGL+IG
Sbjct: 130 FITFTGALFPILLNTVHGVEAVDPRLVASARSLGAGRWAILREVVLPGALPSIVTGLAIG 189

Query: 226 MGTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGL 285
           MGT+WFCLVTAEMI+GQFGIGYYTW SYT+QNY DI+VGML IGV+GMGSSAL+K+LG L
Sbjct: 190 MGTSWFCLVTAEMISGQFGIGYYTWESYTLQNYPDIVVGMLLIGVLGMGSSALVKRLGAL 249

Query: 286 LMPWYLLQR 294
             PWY  +R
Sbjct: 250 ATPWYRTRR 258


>B1JEV3.1 B1JEV3_PSEPW Binding-protein-dependent transport systems inner
           membrane component
          Length = 260

 Score =  340 bits (872), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/249 (71%), Positives = 207/249 (83%)

Query: 46  LRLASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYR 105
           LRLAS+  CL  WQ A++  L+LGL +F  VP+P+ VL AAW L  S  +L+HL +SL R
Sbjct: 10  LRLASLLACLSFWQVAASAKLDLGLFSFTYVPTPRAVLDAAWQLLTSSAVLAHLGSSLSR 69

Query: 106 VFAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMI 165
           VFAG+ VAAL G+ LG+LIGR +W  D LLPPLE+LRPIPAVAWIPLAILMFPSSE+SM+
Sbjct: 70  VFAGYSVAALLGVALGLLIGRSQWAEDTLLPPLEVLRPIPAVAWIPLAILMFPSSELSMV 129

Query: 166 YITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIG 225
           +ITF GALFPILLNT+HGVE VD RL+ASARSLG+GR AI  EV+LP A PSIVTGL+IG
Sbjct: 130 FITFTGALFPILLNTVHGVEAVDPRLVASARSLGAGRWAILREVVLPGALPSIVTGLAIG 189

Query: 226 MGTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGL 285
           MGT+WFCLVTAEMI+GQFGIGYYTW SYT+QNY DIIVGML IGV+GMGSSAL+K+LG L
Sbjct: 190 MGTSWFCLVTAEMISGQFGIGYYTWESYTLQNYPDIIVGMLLIGVLGMGSSALVKQLGAL 249

Query: 286 LMPWYLLQR 294
             PWY  +R
Sbjct: 250 ATPWYRTRR 258


>Q1BHD8.1 Q1BHD8_BURCA Binding-protein-dependent transport systems inner
           membrane component
          Length = 291

 Score =  336 bits (862), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/244 (68%), Positives = 199/244 (81%)

Query: 47  RLASVAVCLLLWQWASTVHLNLGLITFQNVPSPKEVLQAAWALAQSPRLLSHLSASLYRV 106
           R+AS+A C+ LWQ A    L+LG++TF NVP+P +V  A  A  QSP+L  HL AS+ RV
Sbjct: 41  RIASLAACIALWQAAVHWRLSLGIVTFANVPAPSDVGPALAAFLQSPKLPMHLFASITRV 100

Query: 107 FAGFVVAALAGIVLGMLIGRLRWLADVLLPPLELLRPIPAVAWIPLAILMFPSSEISMIY 166
            AGFV AA+ GI LG+ IGR R L D LLPPLE+LRPIPAVAWIPLAILMFPSSE+SM++
Sbjct: 101 LAGFVAAAVTGIGLGLAIGRYRALEDTLLPPLEMLRPIPAVAWIPLAILMFPSSELSMMF 160

Query: 167 ITFIGALFPILLNTIHGVEGVDARLIASARSLGSGRRAIFTEVILPAAAPSIVTGLSIGM 226
           ITF+GALFPILLNT+HG E VD RL+A+ARSLG+   A++ EVILP AAPSI TGLSIGM
Sbjct: 161 ITFVGALFPILLNTVHGAEAVDPRLVATARSLGTRGLALYAEVILPGAAPSIFTGLSIGM 220

Query: 227 GTAWFCLVTAEMIAGQFGIGYYTWASYTIQNYADIIVGMLFIGVMGMGSSALIKKLGGLL 286
           GTAWFCLVTAEMIAGQ+GIGY+TW SYT+QNY DI+VGM  IG++GMGSS L+K++G  L
Sbjct: 221 GTAWFCLVTAEMIAGQYGIGYFTWESYTLQNYPDIVVGMALIGLLGMGSSLLVKRIGAAL 280

Query: 287 MPWY 290
            PWY
Sbjct: 281 TPWY 284