BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0088.p (326 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1WG36.1 A1WG36_VEREI Binding-protein-dependent transport system... 596 e-168 D8IQ31.1 D8IQ31_HERSS ABC-type dipeptide/oligopeptide/nickel tra... 539 e-151 E2T2Z5.1 E2T2Z5_9RALS Peptide ABC transporter, permease protein 521 e-146 C6BJB9.1 C6BJB9_RALP1 Binding-protein-dependent transport system... 521 e-146 B2U6T5.1 B2U6T5_RALPJ Binding-protein-dependent transport system... 520 e-145 >A1WG36.1 A1WG36_VEREI Binding-protein-dependent transport systems inner membrane component Length = 324 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 302/323 (93%), Positives = 311/323 (96%) Query: 1 MSGAILRSVLQALAVLLLMTVIVFFGLHMIGNPVDTLIGPDVDQVDRLRIIKELGFDQPI 60 MSGAILRSVLQALAVLL MTVIVFFGLHMIGNPVD LIG DVDQ+DRLRII ELG DQPI Sbjct: 1 MSGAILRSVLQALAVLLAMTVIVFFGLHMIGNPVDILIGQDVDQIDRLRIIGELGLDQPI 60 Query: 61 WRQYLAFLNSALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGLLAG 120 WRQYLAFL+ ALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGL AG Sbjct: 61 WRQYLAFLDGALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGLFAG 120 Query: 121 LFPENIFSRMVMTGSILGFSLPTFWIGLMLIMAFSVSLGWLPSGGRGETAGLFGVQWSWL 180 LFPE+IFSR+VMTGSILGFSLPTFWIGLMLIM FSVSLGWLPSGGRG+TAGLFGVQWSWL Sbjct: 121 LFPESIFSRIVMTGSILGFSLPTFWIGLMLIMTFSVSLGWLPSGGRGQTAGLFGVQWSWL 180 Query: 181 TVDGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR 240 T DGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR Sbjct: 181 TADGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR 240 Query: 241 NTLIPLVTILGLEFGSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF 300 NTLIPLVTI+GLE GSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF Sbjct: 241 NTLIPLVTIVGLELGSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF 300 Query: 301 VTLNLIVDVLYKVLDPRVRVEAE 323 V LNL+VDVLYK+LDPRVRVE + Sbjct: 301 VALNLMVDVLYKLLDPRVRVEVK 323 >D8IQ31.1 D8IQ31_HERSS ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein Length = 324 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 278/323 (86%), Positives = 305/323 (94%) Query: 1 MSGAILRSVLQALAVLLLMTVIVFFGLHMIGNPVDTLIGPDVDQVDRLRIIKELGFDQPI 60 MSGAI RSV+QAL V+LLMTVIVFFGLHMIGNPVD LIG DVDQVDRLRII+ELG DQP+ Sbjct: 1 MSGAIARSVVQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIQELGLDQPV 60 Query: 61 WRQYLAFLNSALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGLLAG 120 WRQYLAFLN ALHGNLGNSFVYN PAI LIFQRLPATLELA AAL+LA+++G+PLGL AG Sbjct: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELACAALLLALVVGVPLGLFAG 120 Query: 121 LFPENIFSRMVMTGSILGFSLPTFWIGLMLIMAFSVSLGWLPSGGRGETAGLFGVQWSWL 180 + P++ FSR+VMT SI GFSLPTFWIGLMLIMAFSV+LGWLPSGGRG+TA LFGVQWSWL Sbjct: 121 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL 180 Query: 181 TVDGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR 240 T DG RH+ILPA+NLSLFKISLVIRLTRANVREVLPMDFVKFARAKGL+P RVVLMYVLR Sbjct: 181 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLSPARVVLMYVLR 240 Query: 241 NTLIPLVTILGLEFGSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF 300 NTLIPLVT++GLEFGSTIAFAVVTESIFAWPG+GKLILDSINALDRPVIVAY+MVIVC+F Sbjct: 241 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF 300 Query: 301 VTLNLIVDVLYKVLDPRVRVEAE 323 VT+NL+VDVLYK+LDPRVRVEA+ Sbjct: 301 VTINLVVDVLYKLLDPRVRVEAK 323 >E2T2Z5.1 E2T2Z5_9RALS Peptide ABC transporter, permease protein Length = 327 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 254/326 (77%), Positives = 295/326 (90%) Query: 1 MSGAILRSVLQALAVLLLMTVIVFFGLHMIGNPVDTLIGPDVDQVDRLRIIKELGFDQPI 60 M+G +LR + QAL V+L+MTVIVF GLH IGNPVD LIG DVDQ+DR RII ELG D+P+ Sbjct: 1 MTGWLLRRIGQALLVVLVMTVIVFIGLHAIGNPVDILIGQDVDQIDRARIIAELGLDKPL 60 Query: 61 WRQYLAFLNSALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGLLAG 120 W QYLAFLN ALHGNLG SFVYNEPAI+LI QRLPATLELAF+ALI+AV+IG+PLGL AG Sbjct: 61 WEQYLAFLNGALHGNLGKSFVYNEPAIQLILQRLPATLELAFSALIIAVVIGVPLGLFAG 120 Query: 121 LFPENIFSRMVMTGSILGFSLPTFWIGLMLIMAFSVSLGWLPSGGRGETAGLFGVQWSWL 180 L+P + SR++MTGS++GFSLPTFW+GLMLIMAFSVSLGWLP+ GRGETA LFG++WSWL Sbjct: 121 LYPRHPVSRLLMTGSVVGFSLPTFWVGLMLIMAFSVSLGWLPASGRGETARLFGIEWSWL 180 Query: 181 TVDGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR 240 TVDGLRHL+LPA+NLSLFK+SLV+RLT A VREVLP+DFVKFARAKGL+PLRVVL +VLR Sbjct: 181 TVDGLRHLVLPAVNLSLFKLSLVLRLTSAGVREVLPLDFVKFARAKGLSPLRVVLAHVLR 240 Query: 241 NTLIPLVTILGLEFGSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF 300 NTLIPLVT+LGLE GSTIAFAVVTESIFAWPG+GKLILDSIN+LDRPVIV+Y++V+VCLF Sbjct: 241 NTLIPLVTVLGLELGSTIAFAVVTESIFAWPGAGKLILDSINSLDRPVIVSYLIVVVCLF 300 Query: 301 VTLNLIVDVLYKVLDPRVRVEAEVAA 326 V+LNLIVD+LY++LDPRVR A Sbjct: 301 VSLNLIVDILYRLLDPRVRAADSAEA 326 >C6BJB9.1 C6BJB9_RALP1 Binding-protein-dependent transport systems inner membrane component Length = 327 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/326 (77%), Positives = 295/326 (90%) Query: 1 MSGAILRSVLQALAVLLLMTVIVFFGLHMIGNPVDTLIGPDVDQVDRLRIIKELGFDQPI 60 M+G ++R + QAL V+L+MTVIVF GLH IGNPVD LIG DVDQ+DR RII ELG D+P+ Sbjct: 1 MTGWLIRRIGQALLVVLVMTVIVFIGLHAIGNPVDILIGQDVDQIDRARIIAELGLDKPL 60 Query: 61 WRQYLAFLNSALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGLLAG 120 W QYLAFLN ALHGNLG SFVYNEPAI+LI QRLPATLELAF+ALI+AV+IG+PLGL AG Sbjct: 61 WEQYLAFLNGALHGNLGKSFVYNEPAIQLILQRLPATLELAFSALIIAVVIGVPLGLFAG 120 Query: 121 LFPENIFSRMVMTGSILGFSLPTFWIGLMLIMAFSVSLGWLPSGGRGETAGLFGVQWSWL 180 L+P + SR++MTGS++GFSLPTFW+GLMLIMAFSVSLGWLP+ GRGETA LFG++WSWL Sbjct: 121 LYPRHPVSRLLMTGSVVGFSLPTFWVGLMLIMAFSVSLGWLPASGRGETARLFGIEWSWL 180 Query: 181 TVDGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR 240 TVDGLRHL+LPA+NLSLFK+SLV+RLT A VREVLP+DFVKFARAKGL+PLRVVL +VLR Sbjct: 181 TVDGLRHLVLPAVNLSLFKLSLVLRLTSAGVREVLPLDFVKFARAKGLSPLRVVLAHVLR 240 Query: 241 NTLIPLVTILGLEFGSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF 300 NTLIPLVT+LGLE GSTIAFAVVTESIFAWPG+GKLILDSIN+LDRPVIV+Y++V+VCLF Sbjct: 241 NTLIPLVTVLGLELGSTIAFAVVTESIFAWPGAGKLILDSINSLDRPVIVSYLIVVVCLF 300 Query: 301 VTLNLIVDVLYKVLDPRVRVEAEVAA 326 V+LNLIVD+LY++LDPRVR A Sbjct: 301 VSLNLIVDILYRLLDPRVRAADSAEA 326 >B2U6T5.1 B2U6T5_RALPJ Binding-protein-dependent transport systems inner membrane component Length = 327 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 253/326 (77%), Positives = 295/326 (90%) Query: 1 MSGAILRSVLQALAVLLLMTVIVFFGLHMIGNPVDTLIGPDVDQVDRLRIIKELGFDQPI 60 M+G ++R + QAL V+L+MTVIVF GLH IGNPVD LIG DVDQ+DR RII ELG D+P+ Sbjct: 1 MTGWLIRRIGQALLVVLVMTVIVFIGLHAIGNPVDILIGQDVDQIDRARIIAELGLDKPL 60 Query: 61 WRQYLAFLNSALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGLLAG 120 W QYLAFLN ALHGNLG SFVYNEPAI+LI QRLPATLELAF+ALI+AV+IG+PLGL AG Sbjct: 61 WEQYLAFLNGALHGNLGKSFVYNEPAIQLILQRLPATLELAFSALIIAVVIGVPLGLFAG 120 Query: 121 LFPENIFSRMVMTGSILGFSLPTFWIGLMLIMAFSVSLGWLPSGGRGETAGLFGVQWSWL 180 L+P + SR++MTGS++GFSLPTFW+GLMLIMAFSVSLGWLP+ GRGETA LFGV+WSWL Sbjct: 121 LYPRHPVSRLLMTGSVVGFSLPTFWVGLMLIMAFSVSLGWLPASGRGETARLFGVEWSWL 180 Query: 181 TVDGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR 240 TVDGLRHL+LPA+NLSLFK+SLV+RLT A VREV+P+DFVKFARAKGL+PLRVVL +VLR Sbjct: 181 TVDGLRHLVLPAVNLSLFKLSLVLRLTSAGVREVVPLDFVKFARAKGLSPLRVVLAHVLR 240 Query: 241 NTLIPLVTILGLEFGSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF 300 NTLIPLVT+LGLE GSTIAFAVVTESIFAWPG+GKLILDSIN+LDRPVIV+Y++V+VCLF Sbjct: 241 NTLIPLVTVLGLELGSTIAFAVVTESIFAWPGAGKLILDSINSLDRPVIVSYLIVVVCLF 300 Query: 301 VTLNLIVDVLYKVLDPRVRVEAEVAA 326 V+LNLIVD+LY++LDPRVR A Sbjct: 301 VSLNLIVDILYRLLDPRVRAADSAEA 326