BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0078.p (304 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5LAM4.1 B5LAM4_9BURK ABC-type sugar transport system permease c... 547 e-154 D8IWY0.1 D8IWY0_HERSS ABC-type sugar transport system, permease ... 547 e-154 Q2S6X8.1 Q2S6X8_HAHCH ABC-type sugar transport system, permease ... 388 e-106 A3YH66.1 A3YH66_9GAMM Sugar ABC transporter, permease protein 385 e-105 A6VVU7.1 A6VVU7_MARMS Binding-protein-dependent transport system... 385 e-105 >B5LAM4.1 B5LAM4_9BURK ABC-type sugar transport system permease component Length = 307 Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust. Identities = 273/299 (91%), Positives = 284/299 (94%) Query: 6 PWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDSDWSTA 65 PWHIV FLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGL NY TILFDSDWS A Sbjct: 9 PWHIVVFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLANYHTILFDSDWSKA 68 Query: 66 FWNAMWNNVKFFCIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIW 125 FWNAM NNVKFF IHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIW Sbjct: 69 FWNAMLNNVKFFAIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVIIGFIW 128 Query: 126 QLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIYAALLA 185 QLI+SPLWGVGE LMT VGLGDYFAP+LGQESTAL TL L+SVWQY+GIPMMLIYAALLA Sbjct: 129 QLILSPLWGVGEGLMTHVGLGDYFAPWLGQESTALLTLGLVSVWQYVGIPMMLIYAALLA 188 Query: 186 VPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKGALAGP 245 VPEEVLEAA+AEGAS+ RIFWQIKLPLI PTLGLVTILTFVANFNAFDLIYSVKGALAGP Sbjct: 189 VPEEVLEAAYAEGASSFRIFWQIKLPLILPTLGLVTILTFVANFNAFDLIYSVKGALAGP 248 Query: 246 NYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVGAYFYLVQRKLTRYEL 304 NY++D+LGTFFYRTFFGYQAQ+GSPTMGAAVATLMFLVIL GV +YFY VQRKLTRYEL Sbjct: 249 NYTTDILGTFFYRTFFGYQAQIGSPTMGAAVATLMFLVILLGVASYFYFVQRKLTRYEL 307 >D8IWY0.1 D8IWY0_HERSS ABC-type sugar transport system, permease component protein Length = 304 Score = 547 bits (1409), Expect = e-154, Method: Compositional matrix adjust. Identities = 269/304 (88%), Positives = 287/304 (94%) Query: 1 VKTARPWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDS 60 +KT R W + LAPAV+IY++FSALPLLDTLRLGFYT+NDAGV SFVGLDNYRTILFD Sbjct: 1 MKTIRAWQLAVLLAPAVLIYALFSALPLLDTLRLGFYTANDAGVRSFVGLDNYRTILFDP 60 Query: 61 DWSTAFWNAMWNNVKFFCIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVI 120 DWS AFWNAMWNNVKFFCIHM LQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVI Sbjct: 61 DWSAAFWNAMWNNVKFFCIHMALQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVI 120 Query: 121 IGFIWQLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIY 180 IGFIWQLI+SPLWGVGEKL+ VGL D+FAP+LGQESTAL TLSLISVWQY+GIPMMLIY Sbjct: 121 IGFIWQLILSPLWGVGEKLLGTVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIY 180 Query: 181 AALLAVPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKG 240 AALLAVPEEVLEAAHAEGASA+RIFWQIKLPLI+PTLGLVTILTFVANFNAFDLIYSVKG Sbjct: 181 AALLAVPEEVLEAAHAEGASAMRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKG 240 Query: 241 ALAGPNYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVGAYFYLVQRKLT 300 ALAGPNY+SDLLGT+FYRTFFGYQAQ+GSPTMGAAVATLMFLVIL GVGAYF LVQR+LT Sbjct: 241 ALAGPNYASDLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILGGVGAYFVLVQRRLT 300 Query: 301 RYEL 304 RY + Sbjct: 301 RYAM 304 >Q2S6X8.1 Q2S6X8_HAHCH ABC-type sugar transport system, permease components Length = 310 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 193/304 (63%), Positives = 244/304 (80%) Query: 1 VKTARPWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDS 60 ++ PWHI+ FLAP ++IY S PLLDTLRLGF++ + +G FVG+ NY +LF Sbjct: 7 IRKPFPWHILVFLAPGLLIYLTVSVYPLLDTLRLGFFSEDKSGATFFVGMQNYANLLFSE 66 Query: 61 DWSTAFWNAMWNNVKFFCIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVI 120 WS FWNA+ NN+ FF IHMLLQNPIGLLLA L S LR + TYRTL+F+PT+LSVVI Sbjct: 67 VWSEPFWNALKNNLMFFVIHMLLQNPIGLLLALLLSSPRLRLSGTYRTLLFMPTMLSVVI 126 Query: 121 IGFIWQLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIY 180 +GF+WQL++SPLWG+ E M +GLGDYF +LG+E TAL TLSLISVWQ++GIPMMLIY Sbjct: 127 VGFVWQLLLSPLWGISEDFMYNIGLGDYFDAWLGKEGTALVTLSLISVWQFVGIPMMLIY 186 Query: 181 AALLAVPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKG 240 AALL +PE++ +A +GA++ +IFW IKLPL+ PT+ +V+ILTFVANFNAF+LIY+VKG Sbjct: 187 AALLNIPEDLNDAGVVDGANSWQIFWNIKLPLLLPTISMVSILTFVANFNAFELIYAVKG 246 Query: 241 ALAGPNYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVGAYFYLVQRKLT 300 ALAGPN+SSD++GT FYRTFFG+Q Q GSPTMGAAVATLMFL+IL GV Y + VQR++ Sbjct: 247 ALAGPNFSSDIMGTLFYRTFFGFQLQQGSPTMGAAVATLMFLIILIGVAIYLFFVQRRIQ 306 Query: 301 RYEL 304 R++L Sbjct: 307 RFQL 310 >A3YH66.1 A3YH66_9GAMM Sugar ABC transporter, permease protein Length = 317 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/302 (61%), Positives = 239/302 (79%), Gaps = 1/302 (0%) Query: 2 KTARPWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDSD 61 K PWHIV FL PA++IY FS PLLDTL L Y G SFVGL N+ T++ D + Sbjct: 16 KKPIPWHIVFFLGPALLIYLTFSVYPLLDTLVLSLY-DEQKGQSSFVGLQNFITLISDDN 74 Query: 62 WSTAFWNAMWNNVKFFCIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVII 121 WS+AFWNA+ NN +FF IHML+QNPIGLLLA L S LR + +YRT IF+PT+LSVVII Sbjct: 75 WSSAFWNALANNFQFFIIHMLVQNPIGLLLAVLLSSPKLRFSGSYRTFIFMPTMLSVVII 134 Query: 122 GFIWQLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIYA 181 GF+WQL++SP+WG+ E + +GL YF +LG+ES+AL TLS ISVWQ++GIPMMLIYA Sbjct: 135 GFVWQLLLSPIWGISENFLYHLGLDHYFDAWLGKESSALITLSFISVWQFVGIPMMLIYA 194 Query: 182 ALLAVPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKGA 241 LL +P+++++A+ +GA+ ++ FW IKLPLI PT+ +V+ILTFVANFNAF+LIY+VKGA Sbjct: 195 TLLNIPDDIVDASVVDGANPMQTFWYIKLPLILPTIAMVSILTFVANFNAFELIYAVKGA 254 Query: 242 LAGPNYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVGAYFYLVQRKLTR 301 LAGPN+S+DL+GTFFYRTFFG+Q Q GS TMGAAVATLMFL+IL G+ + + VQR++ R Sbjct: 255 LAGPNFSTDLMGTFFYRTFFGFQLQEGSATMGAAVATLMFLIILVGIMLFLFFVQRRIQR 314 Query: 302 YE 303 ++ Sbjct: 315 FQ 316 >A6VVU7.1 A6VVU7_MARMS Binding-protein-dependent transport systems inner membrane component Length = 311 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/302 (60%), Positives = 238/302 (78%), Gaps = 1/302 (0%) Query: 2 KTARPWHIVAFLAPAVIIYSMFSALPLLDTLRLGFYTSNDAGVHSFVGLDNYRTILFDSD 61 K PWH+V FL P ++IY +FS PLLDTL L Y H FVGL N+ T++ D Sbjct: 10 KKPFPWHLVFFLGPGLLIYVVFSVYPLLDTLVLSLYNEQQGQSH-FVGLQNFITLVTDDT 68 Query: 62 WSTAFWNAMWNNVKFFCIHMLLQNPIGLLLATLFSLKGLRGARTYRTLIFLPTLLSVVII 121 WS AFWNA+ NN KFF IHML+QNPIGLLLA L S LR + TYRTLIF+PT+LSVVII Sbjct: 69 WSQAFWNALGNNFKFFAIHMLVQNPIGLLLAVLLSSPKLRLSGTYRTLIFMPTMLSVVII 128 Query: 122 GFIWQLIISPLWGVGEKLMTLVGLGDYFAPFLGQESTALFTLSLISVWQYIGIPMMLIYA 181 GF+WQL++SP+WG+ E + +GLG YF +LG+ES+AL TL+ ISVWQ++GIPMMLIYA Sbjct: 129 GFVWQLLLSPIWGISENFLYSIGLGQYFDAWLGKESSALITLAFISVWQFVGIPMMLIYA 188 Query: 182 ALLAVPEEVLEAAHAEGASALRIFWQIKLPLIWPTLGLVTILTFVANFNAFDLIYSVKGA 241 LL +P+++++A+ +GA++ + FW IKLPLI PT+ +V+ILTFVANFNAF+LIY+VKGA Sbjct: 189 TLLNIPDDIVDASVVDGANSFQTFWHIKLPLILPTIAMVSILTFVANFNAFELIYAVKGA 248 Query: 242 LAGPNYSSDLLGTFFYRTFFGYQAQVGSPTMGAAVATLMFLVILAGVGAYFYLVQRKLTR 301 LAGP++S+DL+GTFFYRTFFG+Q Q GS +MGAAVATLMFL+IL GV + + +QR++ R Sbjct: 249 LAGPDFSTDLMGTFFYRTFFGFQLQQGSASMGAAVATLMFLIILVGVMLFLFFIQRRIQR 308 Query: 302 YE 303 ++ Sbjct: 309 FQ 310