BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0036.p         (229 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWK7.1 D8IWK7_HERSS Transmembrane sensor histidine kinase tran...   191   5e-47
B8IU64.1 B8IU64_METNO Histidine kinase                                131   8e-29
B0UNA3.1 B0UNA3_METS4 Integral membrane sensor signal transducti...   123   2e-26
F2L8B2.1 F2L8B2_BURGA Periplasmic sensor signal transduction his...    98   8e-19
C5A8I2.1 C5A8I2_BURGB Periplasmic sensor signal transduction his...    95   8e-18

>D8IWK7.1 D8IWK7_HERSS Transmembrane sensor histidine kinase transcription
           regulator protein
          Length = 468

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 1   LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60
           LL+ + ++E R+ HL  LR RTR LGALVNQLINHAMVQHR+D++    +DL +LVR +M
Sbjct: 269 LLATEDNEEKRQRHLTLLRERTRNLGALVNQLINHAMVQHRNDSSLQARIDLGELVRSQM 328

Query: 61  ADMLSHQERLL-DLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119
            ++LS++ R   DL+++ P  PCLI GDAISL EA+KN+L NALQYGA   L V+LE   
Sbjct: 329 TEVLSNRSRTPHDLSLDVPPLPCLIRGDAISLGEAIKNILDNALQYGAPGLLQVRLESDG 388

Query: 120 TQIELRVIDDGPGIPEADWERIRKPFSPRSGERMGASLGLS 160
            +  LR IDDGPGIP ADWER+RKPFSPR  +RMGASLGLS
Sbjct: 389 QRHWLRFIDDGPGIPAADWERLRKPFSPRGEQRMGASLGLS 429


>B8IU64.1 B8IU64_METNO Histidine kinase
          Length = 461

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 102/161 (63%), Gaps = 1/161 (0%)

Query: 1   LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60
           LLSA+ D+  RR  + R++ RT +LG L NQL+NHAMV HR+ +     VDL  + R+ +
Sbjct: 265 LLSAEGDEARRREQVIRVQERTAELGRLTNQLLNHAMVIHRARSIPLAPVDLGAIARRTL 324

Query: 61  ADMLS-HQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119
            D +     R +D   E P++P  I GD I+LREA+ N++ N +++GA   L V+  R+ 
Sbjct: 325 IDAIPLAGTRPIDFGYEGPDEPLPIRGDPIALREALANLIHNGIKHGAPGRLTVRTRRER 384

Query: 120 TQIELRVIDDGPGIPEADWERIRKPFSPRSGERMGASLGLS 160
            +I + V+DDG GIP A+W R+R+PF   SG  +G+ LGL+
Sbjct: 385 DRITVEVVDDGAGIPAAEWRRVREPFQAASGGAIGSGLGLA 425


>B0UNA3.1 B0UNA3_METS4 Integral membrane sensor signal transduction histidine
           kinase
          Length = 462

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 95/146 (65%), Gaps = 1/146 (0%)

Query: 1   LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60
           LLSA+ D + RR  + R++ RT +LG L NQL+NHAMV HR+       VDLA + RQ +
Sbjct: 265 LLSAEDDPKRRRAQVSRVQARTAELGRLTNQLLNHAMVIHRARAVPLAPVDLAGIARQTL 324

Query: 61  ADMLS-HQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119
            D +     RL+D+  + P++   I GD I+LREA+ N++ NAL++GA   L V+  R+ 
Sbjct: 325 IDAIPLSGGRLVDIGYDGPDEALPIRGDPIALREALANLIHNALKHGAPHRLTVRTRREP 384

Query: 120 TQIELRVIDDGPGIPEADWERIRKPF 145
            ++ + V+DDG GIP A+W R+R+PF
Sbjct: 385 GRVSVEVVDDGAGIPAAEWGRVREPF 410


>F2L8B2.1 F2L8B2_BURGA Periplasmic sensor signal transduction histidine
           kinase
          Length = 472

 Score = 98.2 bits (243), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 6/184 (3%)

Query: 1   LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60
           +LS + D   +R  L+ LR     +G L  QL+NHAMV HR++    + +DL  L ++ +
Sbjct: 266 MLSNESDAARQRARLETLRATCSDVGRLTGQLLNHAMVIHRTEVVPLQPIDLVALAKEVL 325

Query: 61  ADMLS-HQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERKE 119
              +    ER + ++++A      I GDAISL+EA+ NVL NAL +G A+ + V ++   
Sbjct: 326 GRTIPLAGERDVQVSLDARLDDATIDGDAISLQEALSNVLHNALHHGMANQIVVTIDGTA 385

Query: 120 TQIELRVIDDGPGIPEADWERIRKPFSPRSGE----RMGASLGLSPRSGERMGASLGSNC 175
            Q+ L V D+G GIP   W+ + +PF    G+    R G+ LGL+    E M A  G   
Sbjct: 386 EQLILTVTDNGTGIPREHWDAVMRPFVRLDGKGAERRDGSGLGLAIVK-EVMDAHGGQVS 444

Query: 176 CACP 179
            A P
Sbjct: 445 FAVP 448


>C5A8I2.1 C5A8I2_BURGB Periplasmic sensor signal transduction histidine
           kinase
          Length = 468

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 106/204 (51%), Gaps = 8/204 (3%)

Query: 1   LLSAQHDDEGRRHHLDRLRTRTRQLGALVNQLINHAMVQHRSDTAAPESVDLAQLVRQEM 60
           +LS + D   +R  L  LR     +G L  QL+NHAMV HR++    + VDL  L ++ +
Sbjct: 266 MLSHEPDAARQRARLATLRATCSDVGRLTGQLLNHAMVIHRTEVVPLQPVDLVALAKEGL 325

Query: 61  --ADMLSHQERLLDLAMEAPEQPCLIMGDAISLREAVKNVLGNALQYGAASFLHVQLERK 118
             A  L+H ER + +++E       I GD ISL+EA++N+L NAL +G A+ + V L   
Sbjct: 326 GRAIPLAH-ERDVQVSLEIGRADATIDGDPISLQEALQNLLHNALHHGVATQITVTLGGS 384

Query: 119 ETQIELRVIDDGPGIPEADWERIRKPFSPRSGE----RMGASLGLSPRSGERMGASLGSN 174
           + Q+ L V D+G GI    W+ + +PF    GE    R G+ LGL+    E M A  G  
Sbjct: 385 DGQVTLTVADNGRGIAREHWDAVLRPFVRLDGEGAQRRDGSGLGLAIVK-EVMDAHGGQV 443

Query: 175 CCACPRWRKWNCSACRTRRFSSSS 198
             A P+   +  +    R   +++
Sbjct: 444 RFAFPQAGGFAVTLAFARSGGAAA 467