BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0028.p         (139 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q124R6.1 Q124R6_POLSJ Transcriptional regulator, LysR family          125   3e-27
B7WQS5.1 B7WQS5_COMTE Transcriptional regulator, LysR family          121   4e-26
A4SZ46.1 A4SZ46_POLSQ Transcriptional regulator, LysR family          112   3e-23
B1LSV8.1 B1LSV8_METRJ Transcriptional regulator, LysR family          111   4e-23
F0DYG8.1 F0DYG8_9PSED LysR family transcriptional regulator            99   3e-19

>Q124R6.1 Q124R6_POLSJ Transcriptional regulator, LysR family
          Length = 315

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 91/134 (67%), Gaps = 5/134 (3%)

Query: 1   VPLCSPALLR-DKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRA 59
           VPLCSP L+   +P       I D+ LI S L+ + W  WFA NG+ LP  RP PSFDRA
Sbjct: 177 VPLCSPQLVDGTRP---IRQQIRDLVLIDSQLSAITWPGWFARNGLTLP-ARPRPSFDRA 232

Query: 60  SLALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKI 119
           +L+++AAV+++G+ALES RLAE+EI+ GELV L       +  ETHF+S R  E++++K+
Sbjct: 233 ALSISAAVDAMGVALESVRLAEREISRGELVELGRDVFFPIAEETHFVSCRVNEQHTEKV 292

Query: 120 MRFRDWLFLQAGLN 133
             FR+WLF  AG++
Sbjct: 293 RLFREWLFKAAGVD 306


>B7WQS5.1 B7WQS5_COMTE Transcriptional regulator, LysR family
          Length = 315

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/131 (50%), Positives = 83/131 (63%), Gaps = 3/131 (2%)

Query: 1   VPLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRAS 60
           VPLCSP L+  K  A  L  I++  LI S L+ V W DWFA+NG+   P +   SFDRA+
Sbjct: 167 VPLCSPTLISRKRTAREL--ISECNLIDSQLSRVTWRDWFAMNGLTTAP-KVNQSFDRAA 223

Query: 61  LALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIM 120
           LA++AAV+ +GI LESTR AE+E+A G+LV L   E   V RETHF S R  E+  +KI 
Sbjct: 224 LAISAAVDGLGITLESTRFAEKELARGDLVELGTKEFPRVSRETHFFSVRTEEQELQKIQ 283

Query: 121 RFRDWLFLQAG 131
            FR WL    G
Sbjct: 284 VFRTWLMKSLG 294


>A4SZ46.1 A4SZ46_POLSQ Transcriptional regulator, LysR family
          Length = 308

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/134 (41%), Positives = 86/134 (64%), Gaps = 3/134 (2%)

Query: 2   PLCSPALLRDKPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRASL 61
           PLCSP ++   P       ++ +TLI+S+LN   W  WF +N +K    R + +FDRA+L
Sbjct: 178 PLCSPEII--DPSIPVEELMSKLTLIESSLNHHSWEQWFEMNHLKNLSTRKI-AFDRAAL 234

Query: 62  ALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIMR 121
           +++AAV+ +G+ LESTR AE+E++ GELV +  G     +  THFLS+R   KN++KI  
Sbjct: 235 SVSAAVDGIGVVLESTRFAEKEMSRGELVEIGAGVFLPTMDRTHFLSFRSNTKNNQKIKL 294

Query: 122 FRDWLFLQAGLNAE 135
           F++W+  +AG+  E
Sbjct: 295 FKEWICAKAGVVTE 308


>B1LSV8.1 B1LSV8_METRJ Transcriptional regulator, LysR family
          Length = 310

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 3/126 (2%)

Query: 3   LCSPALLRD-KPDALTLADIADMTLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRASL 61
           LC+PA+ R  +PDA     I     + S+ +PVRW DWFA NG+ +P G    +FDR SL
Sbjct: 171 LCTPAVARAAQPDAA--GPIGPFARLDSSFSPVRWPDWFARNGLPMPTGAAGAAFDRGSL 228

Query: 62  ALAAAVNSVGIALESTRLAEQEIANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIMR 121
            ++AA   +G+ALE+ R A  E+A G+LVRL G    S+ R+ HF+ YRE +   +KI  
Sbjct: 229 VISAAAQGLGVALETLRFARDELAAGQLVRLGGDRAASLTRDLHFICYRERDGALEKIRA 288

Query: 122 FRDWLF 127
           FR WL 
Sbjct: 289 FRRWLL 294


>F0DYG8.1 F0DYG8_9PSED LysR family transcriptional regulator
          Length = 297

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 25  TLIQSTLNPVRWSDWFALNGMKLPPGRPMPSFDRASLALAAAVNSVGIALESTRLAEQEI 84
           +LI S L+PVRWSDWF   G+         SFDRA+L L+AA + +GIALESTRLAE E+
Sbjct: 190 SLIDSQLSPVRWSDWFRHEGVAERADLGGLSFDRAALVLSAAADGLGIALESTRLAETEL 249

Query: 85  ANGELVRLDGGELKSVLRETHFLSYREGEKNSKKIMRFRDWLFLQ 129
             G LV L+G +   + +E HFL YR   K S+KI RF++W+  Q
Sbjct: 250 RQGSLVILNGHQ-PPLQQEMHFLCYRGSMKGSRKIERFKEWIMNQ 293