BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0010.p         (96 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYN4.1 D8IYN4_HERSS Methyl-accepting chemotaxis transmembrane ...   120   9e-26

>D8IYN4.1 D8IYN4_HERSS Methyl-accepting chemotaxis transmembrane protein
          Length = 548

 Score =  120 bits (300), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 75/89 (84%)

Query: 1  MTITKRLILTLSVALLALLFVGIDGLWQLQRAQQRFDTVQNRIIPSISGLNAAKGFLADT 60
          MTITKRLI+TLS ALLALLFVG DGLWQLQRAQQR + +QNRIIP +  LN  KG+LAD+
Sbjct: 1  MTITKRLIITLSTALLALLFVGADGLWQLQRAQQRLELIQNRIIPGMDSLNLLKGYLADS 60

Query: 61 RLAGYRLSVFSNLSDKTALDKAVADANXL 89
          RLAGYRLSVF+NLSDK+ L KAV  AN L
Sbjct: 61 RLAGYRLSVFANLSDKSGLQKAVDTANKL 89