BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0009.p (468 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IYN4.1 D8IYN4_HERSS Methyl-accepting chemotaxis transmembrane ... 582 e-164 D8IST0.1 D8IST0_HERSS Methyl-accepting chemotaxis protein I, ser... 390 e-106 Q1LS30.1 Q1LS30_RALME Methyl-accepting chemotaxis protein 388 e-105 Q93ET6.1 Q93ET6_RAHAQ Putative methyl-accepting chemotaxis prote... 369 e-100 D5NHF4.1 D5NHF4_9BURK Methyl-accepting chemotaxis sensory transd... 368 1e-99 >D8IYN4.1 D8IYN4_HERSS Methyl-accepting chemotaxis transmembrane protein Length = 548 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 333/460 (72%), Positives = 385/460 (83%), Gaps = 8/460 (1%) Query: 5 FDDVVAKYEKEQLFDDTDRKMLEADKVNMEAYRKALIPFFAAAHAGDMDGVRATLAAGSP 64 D+ A YE++ +FD+ DR +++ADK N+EAYRKAL+PFFAAA+A DMDGVRATL AG+P Sbjct: 90 LDEEFAHYERDLIFDEKDRALIQADKANIEAYRKALVPFFAAAYANDMDGVRATLQAGTP 149 Query: 65 LALSAAGVKKGIDDHIAYNGKLVDDVRAESIAAYEFAFKSMVAVIVVAFLLTGTLALTLY 124 LA+SAA KKG +DHI K++D ++ ES AY FA ++M+AV+VVA LLTG L L + Sbjct: 150 LAISAAAAKKGFEDHILIGRKMIDTIKQESDEAYAFALRTMIAVVVVAVLLTGLLGLQVV 209 Query: 125 RNISGSLRNIRNTFEEVSASLDLSQPMRVDRMDEIGHAATAFNKLRARIVDVIGTVRTST 184 R++ SL I++TFE VS +LDLS+P+ V+RMDEIG A AFNKL ARIVDV+ T RTST Sbjct: 210 RSVIRSLGKIQHTFEHVSQTLDLSRPVPVERMDEIGRTAAAFNKLLARIVDVVATTRTST 269 Query: 185 DSVSVAARQIAVGNTDLSSRTEQQAASLEETASSLEQLTSVVKQNTENAKQANQLALSAS 244 DSV+VAARQIA GN DLS+RTEQQAA+LEE+ASSLEQLTSVV QNT+NA+QAN+LA SAS Sbjct: 270 DSVTVAARQIAAGNADLSARTEQQAAALEESASSLEQLTSVVLQNTQNARQANELAQSAS 329 Query: 245 HIASQGGDVVRQVVDTMNSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 304 HIASQGGDVVRQVVDTMNSINESSRKIVDII+VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 330 HIASQGGDVVRQVVDTMNSINESSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGR 389 Query: 305 GFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVGSGSKLVQQAGTTMSDIVNSVQKVTD 364 GFAVVASEVRSLAQRSAAAAKEIK LIDDSV KVGSGSKLV+QAGTTMSDIV+SVQ+VT Sbjct: 390 GFAVVASEVRSLAQRSAAAAKEIKELIDDSVSKVGSGSKLVEQAGTTMSDIVDSVQRVTV 449 Query: 365 IVGEIASASEEQSSGISQVNQAVSQMDDVTQQNAALVEEAAAAAQALQDQAETLEQVVSV 424 IVG+IA+ASEEQS+GISQVNQA++QMD TQQNAALVEEAAAAA ALQ QAETLE VV+V Sbjct: 450 IVGDIANASEEQSAGISQVNQAIAQMDQGTQQNAALVEEAAAAAHALQQQAETLESVVAV 509 Query: 425 FKLDAARLVTTAASQSAKRAIDITPSAVRL-VSPAPRRLE 463 FKL+ RL + I SA RL SPA R+ E Sbjct: 510 FKLE-GRL------NGSIPVIQAPASAARLPASPAARQAE 542 >D8IST0.1 D8IST0_HERSS Methyl-accepting chemotaxis protein I, serine sensor receptor protein Length = 544 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/429 (53%), Positives = 295/429 (68%), Gaps = 18/429 (4%) Query: 6 DDVVAKYEKEQLFDDTDRKMLEADKVNMEAYRKALIPFFAAAHAGDMDGVRATLAAGSPL 65 +D + KYE+EQL D TD+++L A +V+ + + K+L A+AG + RA LA P+ Sbjct: 93 EDALQKYEQEQLADATDKELLRAVRVSYQEFDKSLAEALKLANAGQWNEARALLANNQPV 152 Query: 66 ALSAAGVKKGIDDHIAYNGKLVDDVRAESIAAYEFAFKSMVAVIVVAFLLTGT------- 118 + K + + AYN K+ S A A ++M A + A L++ Sbjct: 153 I---DRLNKAMTELRAYNEKI-------SQAGAHRAQETMAAARLHAILISAAVIAVVTL 202 Query: 119 LALTLYRNISGSLRNIRNTFEEVSASLDLSQPMRVDRMDEIGHAATAFNKLRARIVDVIG 178 + L + R I+ SL E + A DL++ + DEIGH A K+ +V ++ Sbjct: 203 MGLLIARKIARSLAEAVELAETI-AEGDLTREIDTSSTDEIGHLMAAMAKMNRNLVTIVA 261 Query: 179 TVRTSTDSVSVAARQIAVGNTDLSSRTEQQAASLEETASSLEQLTSVVKQNTENAKQANQ 238 TVRT ++V+ A+ QIA GN DLS+RTEQQA+SLE+TA++ E+LTS VKQN ENA QA+Q Sbjct: 262 TVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTVKQNAENALQADQ 321 Query: 239 LALSASHIASQGGDVVRQVVDTMNSINESSRKIVDIISVIDGIAFQTNILALNAAVEAAR 298 LA +AS IA++GG+VV+QVV TM I SS I DIISVIDGIAFQTNILALNAAVEAAR Sbjct: 322 LASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTNILALNAAVEAAR 381 Query: 299 AGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVGSGSKLVQQAGTTMSDIVNS 358 AGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LIDDSV KV +GS+LV AG TM +V S Sbjct: 382 AGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVMSAGNTMQQVVES 441 Query: 359 VQKVTDIVGEIASASEEQSSGISQVNQAVSQMDDVTQQNAALVEEAAAAAQALQDQAETL 418 V++VTD+V EI++AS EQS GI QVNQA+S MD TQ+NAALVEEA AAAQ+LQ+QA L Sbjct: 442 VRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQL 501 Query: 419 EQVVSVFKL 427 E+ V+VFKL Sbjct: 502 ERAVNVFKL 510 >Q1LS30.1 Q1LS30_RALME Methyl-accepting chemotaxis protein Length = 513 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 224/423 (52%), Positives = 298/423 (70%), Gaps = 1/423 (0%) Query: 5 FDDVVAKYEKEQLFDDTDRKMLEADKVNMEAYRKALIPFFAAAHAGDMDGVRATLAAGSP 64 FD ++ KYE++ + D+TDR ML AD+ ++ YR + FF + GD G + L AG Sbjct: 90 FDRMIDKYERDDISDETDRAMLAADRAAVKHYRDQIPAFFERSRTGDYAGAKQMLTAGEL 149 Query: 65 LALSAAGVKKGIDDHIAYNGKLVDDVRAESIAAYEFAFKSMVAVIVVAFLLTGTLALTLY 124 S A ++K + +H+ YN K + A + + ++VIV+ LT +AL L+ Sbjct: 150 FKASLA-LRKTVAEHLEYNTKQGGIAVENNKAQHARSVSISLSVIVITVALTAIMALMLF 208 Query: 125 RNISGSLRNIRNTFEEVSASLDLSQPMRVDRMDEIGHAATAFNKLRARIVDVIGTVRTST 184 R I GSL I+ + E VS +LDL VDR+DEIG A +FN L R+ + VR ST Sbjct: 209 RRIRGSLAQIQGSLEYVSRTLDLDHRAAVDRLDEIGLTAQSFNTLLERVAGTLRDVRRST 268 Query: 185 DSVSVAARQIAVGNTDLSSRTEQQAASLEETASSLEQLTSVVKQNTENAKQANQLALSAS 244 DSV VAA QIA GNTDLSSRTEQQAASLEETASS+EQL++ V+QN +NA+QA+ LA +A+ Sbjct: 269 DSVGVAAAQIAAGNTDLSSRTEQQAASLEETASSMEQLSTTVRQNADNAQQASSLASNAA 328 Query: 245 HIASQGGDVVRQVVDTMNSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 304 +A QG V Q+V+TM +I+ SS +I +I ++I+GIAFQTNILALNAAVEAARAGEQGR Sbjct: 329 QVADQGNQAVNQMVETMGAISTSSGRIAEITNMIEGIAFQTNILALNAAVEAARAGEQGR 388 Query: 305 GFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVGSGSKLVQQAGTTMSDIVNSVQKVTD 364 GFAVVA EVRSLAQRS++AAKEIK LI+ S + V +GS+ G+TM++I +V++V+D Sbjct: 389 GFAVVAGEVRSLAQRSSSAAKEIKDLIEASAETVRAGSEQAHGVGSTMTEIQQAVRRVSD 448 Query: 365 IVGEIASASEEQSSGISQVNQAVSQMDDVTQQNAALVEEAAAAAQALQDQAETLEQVVSV 424 I+ EI++AS EQS+GI QV AV QMD VTQQNAALVEEAAAAAQ+L +QA L ++V Sbjct: 449 IITEISAASREQSTGIEQVGHAVGQMDQVTQQNAALVEEAAAAAQSLDEQASKLREMVGQ 508 Query: 425 FKL 427 F++ Sbjct: 509 FRM 511 >Q93ET6.1 Q93ET6_RAHAQ Putative methyl-accepting chemotaxis protein I Length = 554 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 222/433 (51%), Positives = 295/433 (68%), Gaps = 22/433 (5%) Query: 33 MEAYRKALIPFFAAAHAGDMDGV------RATLAAGSPLALSAAGVKKGIDDHIAYNGKL 86 EA ++ L+ A A AGDMDG + T + + L L++A D + GK Sbjct: 128 FEAAKEQLV---ALARAGDMDGATEFVLRKLTTSQNAYLDLASA-FANSQDQQLQAEGK- 182 Query: 87 VDDVRAESIAAYEFAFKSMVAVIVVAFLLTGTLALTLYRNISGSLRNIRNTFEEVSASLD 146 ++IA A + + V+A L+ L L R+I+ L E V+A D Sbjct: 183 ------KAIADGHNAIQLTLIFSVLAILVAAALGFFLTRSITRPLHTAVKVAENVAAG-D 235 Query: 147 LSQPMRVDRMDEIGHAATAFNKLRARIVDVIGTVRTSTDSVSVAARQIAVGNTDLSSRTE 206 L+ ++V DE G + ++ ++ VR T+++ A+ +IA GN DLSSRTE Sbjct: 236 LTTQIQVTSGDETGQLMQGLKNMNENLLKIVTEVRAGTNAIHSASGEIAAGNLDLSSRTE 295 Query: 207 QQAASLEETASSLEQLTSVVKQNTENAKQANQLALSASHIASQGGDVVRQVVDTMNSINE 266 QQA+SLEETAS++EQ+T+ VKQN +NA+QANQLA AS +A QGG+VV +VV+TM IN Sbjct: 296 QQASSLEETASAMEQMTATVKQNADNARQANQLAAQASRVAVQGGEVVGEVVNTMEGINA 355 Query: 267 SSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 326 SSRKIVDII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKE Sbjct: 356 SSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKE 415 Query: 327 IKTLIDDSVDKVGSGSKLVQQAGTTMSDIVNSVQKVTDIVGEIASASEEQSSGISQVNQA 386 IK LIDDSV KV +G++LV +AG+TM+++V+SV+ VTDIVGEIA AS EQS+GI ++N+A Sbjct: 416 IKVLIDDSVAKVDNGTQLVAKAGSTMAEVVSSVKSVTDIVGEIAIASNEQSTGIEEINKA 475 Query: 387 VSQMDDVTQQNAALVEEAAAAAQALQDQAETLEQVVSVFKLDAARLVTTAASQSAKRAID 446 ++QMD+VTQQNAALV+EA++AA +L +QAE L Q +S+FK+ A TAA + A A Sbjct: 476 ITQMDEVTQQNAALVQEASSAAYSLNEQAERLSQAISIFKVSAGS--ATAAVRKAAHA-- 531 Query: 447 ITPSAVRLVSPAP 459 TP+ + P P Sbjct: 532 KTPALLSNRQPVP 544 >D5NHF4.1 D5NHF4_9BURK Methyl-accepting chemotaxis sensory transducer Length = 488 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 209/327 (63%), Positives = 257/327 (78%) Query: 101 AFKSMVAVIVVAFLLTGTLALTLYRNISGSLRNIRNTFEEVSASLDLSQPMRVDRMDEIG 160 A +++ V+VVA + L R+I +L I+ T ++ S SLDL+Q V+ DEI Sbjct: 162 AVGTVITVLVVAMAIVVGWIFLLSRSIQRALGGIQGTLQQASESLDLTQRASVEGKDEIS 221 Query: 161 HAATAFNKLRARIVDVIGTVRTSTDSVSVAARQIAVGNTDLSSRTEQQAASLEETASSLE 220 A AFN L ARI +V+ VR S +SVS A++QIA GN DLSSRTE+QAASL+ETA+S+E Sbjct: 222 QTAVAFNHLMARIAEVMAAVRDSVESVSTASKQIAAGNVDLSSRTEEQAASLQETAASME 281 Query: 221 QLTSVVKQNTENAKQANQLALSASHIASQGGDVVRQVVDTMNSINESSRKIVDIISVIDG 280 QLT V+QN ENA+QAN LA S++ IA +GGDVV +VV TM IN S KI DII VIDG Sbjct: 282 QLTGTVRQNAENARQANGLAQSSATIAVRGGDVVAEVVATMGEINAGSAKIADIIGVIDG 341 Query: 281 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVGS 340 IAFQTNILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSAAAA++IKTLI+ SV+KV + Sbjct: 342 IAFQTNILALNAAVEAARAGEHGRGFAVVATEVRTLAQRSAAAARDIKTLIETSVNKVET 401 Query: 341 GSKLVQQAGTTMSDIVNSVQKVTDIVGEIASASEEQSSGISQVNQAVSQMDDVTQQNAAL 400 G+KLV QAG+TM +IV S+++VTDI+GEIA+AS+EQS GI QV QAV+QMD+VTQQNAAL Sbjct: 402 GTKLVDQAGSTMGEIVISIKRVTDIMGEIAAASDEQSKGIDQVGQAVTQMDEVTQQNAAL 461 Query: 401 VEEAAAAAQALQDQAETLEQVVSVFKL 427 VE+AAAAAQ+L DQA+ L VSVFKL Sbjct: 462 VEQAAAAAQSLDDQAKKLHTAVSVFKL 488