BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0003.p (419 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWD6.1 D8IWD6_HERSS ABC-type branched-chain amino acid transpo... 679 0.0 E8YU47.1 E8YU47_9BURK Extracellular ligand-binding receptor 632 e-179 D5N9K4.1 D5N9K4_9BURK Extracellular ligand-binding receptor 631 e-179 D5WJ87.1 D5WJ87_BURSC Extracellular ligand-binding receptor 630 e-178 B1G0Y1.1 B1G0Y1_9BURK Extracellular ligand-binding receptor 629 e-178 >D8IWD6.1 D8IWD6_HERSS ABC-type branched-chain amino acid transport system, periplasmic component protein Length = 404 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/403 (81%), Positives = 368/403 (91%), Gaps = 2/403 (0%) Query: 17 FSFTYALQFAAVAAVLATAGLSGNAAAQATIKIGEINSYKAQPAFLEPYRQGWEMALEEI 76 F+F L++A AA+L ++ A AQ TI+IGEINSYKAQPAFLEPYR+GWEMAL+EI Sbjct: 4 FNFQRGLRWALAAALLTMGSVA--ARAQDTIRIGEINSYKAQPAFLEPYRRGWEMALDEI 61 Query: 77 NAAGGVLGKKLEVISRDDNGNPGDSVRVAEELVKREQVSLLFGGFLSNTGLALTDYARQR 136 NA+GGVLGKKLEVI+RDDNGNPGDSVRVAEEL+ RE+V+LLFGGFLSNTGLALTDYA+Q Sbjct: 62 NASGGVLGKKLEVIARDDNGNPGDSVRVAEELMARERVALLFGGFLSNTGLALTDYAKQH 121 Query: 137 KIFFLAAEPLTDKIVWHNGNKYTYRLRPSTYMLVASLVKDAAKLKKKRWAIVYPNYEYGQ 196 ++FFLAAEPLTDKIVW NGNKYTYRLRPST MLVAS+VK+A KLKKKRWAIVYPNYEYGQ Sbjct: 122 RVFFLAAEPLTDKIVWQNGNKYTYRLRPSTSMLVASVVKEAVKLKKKRWAIVYPNYEYGQ 181 Query: 197 SAVASFKTLMKAAQPDIEFVAEQAAPLGKIDAGAVTQALADAKPDAIFNVLFATDLGKFV 256 SAVASFKTLMK AQPD+EFVAEQA PLGKIDAGAVTQALADAKPDAIFN LFA DLGKFV Sbjct: 182 SAVASFKTLMKQAQPDVEFVAEQAPPLGKIDAGAVTQALADAKPDAIFNALFAADLGKFV 241 Query: 257 REGNTRGLFEGREVVSLLSGEPEYLDPLRAEAPSNWLVTGYPWYAINTPEHKKFVDAYRK 316 REGNTRGLFE +VVSLL+GEPEYLDPL+ EAP NW+VTGYPWYAI+TPEHKKFV+AYRK Sbjct: 242 REGNTRGLFEQVDVVSLLTGEPEYLDPLKGEAPQNWIVTGYPWYAIHTPEHKKFVEAYRK 301 Query: 317 KFNDYPRNGSLVGYSALMSIAAGLKKAGSADSDKLATAFSALRVETPVATITYRAQDHQS 376 KFNDYPRNGSLVGYSALMSIAAGL+KAGS D+D+LA AFS L+VETPVA+I YR QDHQS Sbjct: 302 KFNDYPRNGSLVGYSALMSIAAGLRKAGSTDADRLAAAFSGLKVETPVASIVYRPQDHQS 361 Query: 377 TLGAFVGRTGVKDGKGIMSSFVYVDGASLQPSDAEVKKLRAVD 419 TLGAFVGRTG+K+G+G+M+SF Y+DGA+LQ DAEVKKLRA D Sbjct: 362 TLGAFVGRTGLKEGRGVMTSFTYIDGAALQLPDAEVKKLRAPD 404 >E8YU47.1 E8YU47_9BURK Extracellular ligand-binding receptor Length = 402 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 301/389 (77%), Positives = 346/389 (88%), Gaps = 2/389 (0%) Query: 28 VAAVLATAGLSGNAAAQATIKIGEINSYKAQPAFLEPYRQGWEMALEEINAAGGVLGKKL 87 ++ VL+ A NA Q TIKIGEINSYKAQPAFL PY+ GW +ALEEIN AGGVLGKKL Sbjct: 13 LSTVLSFAAFGANA--QQTIKIGEINSYKAQPAFLGPYKNGWNLALEEINGAGGVLGKKL 70 Query: 88 EVISRDDNGNPGDSVRVAEELVKREQVSLLFGGFLSNTGLALTDYARQRKIFFLAAEPLT 147 EV+SRDDNGNPGD++RVA+EL+ REQV LLFGGFLSNTGLALTD+A+Q+KIFFLAAEPLT Sbjct: 71 EVVSRDDNGNPGDTIRVAQELIAREQVQLLFGGFLSNTGLALTDFAKQKKIFFLAAEPLT 130 Query: 148 DKIVWHNGNKYTYRLRPSTYMLVASLVKDAAKLKKKRWAIVYPNYEYGQSAVASFKTLMK 207 DKI W +GNKYTYRLRPSTYM VA LV +AAK KKKRWA+VYPNYEYGQSAVA+FK L+ Sbjct: 131 DKIAWADGNKYTYRLRPSTYMQVAMLVPEAAKQKKKRWALVYPNYEYGQSAVATFKKLLS 190 Query: 208 AAQPDIEFVAEQAAPLGKIDAGAVTQALADAKPDAIFNVLFATDLGKFVREGNTRGLFEG 267 AAQPD++FVAEQA PLG +DAGAVTQA+ADAKPDAIFNVLF DLGKFVREGNTRGLF+ Sbjct: 191 AAQPDVQFVAEQATPLGNVDAGAVTQAIADAKPDAIFNVLFGADLGKFVREGNTRGLFKD 250 Query: 268 REVVSLLSGEPEYLDPLRAEAPSNWLVTGYPWYAINTPEHKKFVDAYRKKFNDYPRNGSL 327 R VVSLL+GEP+YLDPL AEAP+ W+VTGYPWY+I+TP +KKFVDAY+ K++DYPR GS+ Sbjct: 251 RTVVSLLTGEPDYLDPLGAEAPTGWIVTGYPWYSIDTPANKKFVDAYQAKYHDYPRLGSV 310 Query: 328 VGYSALMSIAAGLKKAGSADSDKLATAFSALRVETPVATITYRAQDHQSTLGAFVGRTGV 387 VGYSALMSIAAG+KKAGSAD+DKLA AF L V+TP ITYRAQD+QST+GA+VG TGV Sbjct: 311 VGYSALMSIAAGIKKAGSADTDKLAAAFKGLGVDTPFGPITYRAQDNQSTMGAYVGVTGV 370 Query: 388 KDGKGIMSSFVYVDGASLQPSDAEVKKLR 416 KDGKG+M+S+ Y+DGAS+QPSDAEVKKLR Sbjct: 371 KDGKGVMTSYRYIDGASVQPSDAEVKKLR 399 >D5N9K4.1 D5N9K4_9BURK Extracellular ligand-binding receptor Length = 402 Score = 631 bits (1627), Expect = e-179, Method: Compositional matrix adjust. Identities = 300/389 (77%), Positives = 345/389 (88%), Gaps = 2/389 (0%) Query: 28 VAAVLATAGLSGNAAAQATIKIGEINSYKAQPAFLEPYRQGWEMALEEINAAGGVLGKKL 87 V VL+ A LS NA Q TIKIGEINSYKAQPAFL PY+ GW +AL+++NAAGGVLGK L Sbjct: 13 VPTVLSLAALSANA--QQTIKIGEINSYKAQPAFLGPYKNGWNLALDQVNAAGGVLGKPL 70 Query: 88 EVISRDDNGNPGDSVRVAEELVKREQVSLLFGGFLSNTGLALTDYARQRKIFFLAAEPLT 147 EV+SRDDNGNPGD++RVA+EL+ REQV LLFGGFLSNTGLAL D+A+Q+KIFFLAAEPLT Sbjct: 71 EVVSRDDNGNPGDTIRVAQELIAREQVQLLFGGFLSNTGLALADFAKQKKIFFLAAEPLT 130 Query: 148 DKIVWHNGNKYTYRLRPSTYMLVASLVKDAAKLKKKRWAIVYPNYEYGQSAVASFKTLMK 207 DKIVW +GNKYTYRLRPSTYM VA LV +A KLKKKRWA+VYPNYEYGQSAVA+FK L+ Sbjct: 131 DKIVWADGNKYTYRLRPSTYMQVAMLVPEAVKLKKKRWALVYPNYEYGQSAVATFKKLLT 190 Query: 208 AAQPDIEFVAEQAAPLGKIDAGAVTQALADAKPDAIFNVLFATDLGKFVREGNTRGLFEG 267 AAQPD++FVAEQA PLG +DAGAVTQA+ADAKPDAIFNVLF DLGKFVREGNTRGLF+ Sbjct: 191 AAQPDVQFVAEQATPLGNVDAGAVTQAIADAKPDAIFNVLFGADLGKFVREGNTRGLFKD 250 Query: 268 REVVSLLSGEPEYLDPLRAEAPSNWLVTGYPWYAINTPEHKKFVDAYRKKFNDYPRNGSL 327 R VVSLL+GEP+YLDPL AEAP+ W+VTGYPWY+I+TP +KKFVDAY+ K++DYPR GS+ Sbjct: 251 RSVVSLLTGEPDYLDPLGAEAPTGWIVTGYPWYSIDTPANKKFVDAYQAKYHDYPRLGSV 310 Query: 328 VGYSALMSIAAGLKKAGSADSDKLATAFSALRVETPVATITYRAQDHQSTLGAFVGRTGV 387 VGYSALMSIAAG+KKAGS D DKLA AF L VETP ITYRAQD+QST+GA+VG TGV Sbjct: 311 VGYSALMSIAAGIKKAGSVDPDKLAAAFKGLGVETPFGPITYRAQDNQSTMGAYVGVTGV 370 Query: 388 KDGKGIMSSFVYVDGASLQPSDAEVKKLR 416 KDGKG+M+S+ Y+DGAS+QPSDAEV+KLR Sbjct: 371 KDGKGVMTSYRYIDGASVQPSDAEVRKLR 399 >D5WJ87.1 D5WJ87_BURSC Extracellular ligand-binding receptor Length = 402 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 301/392 (76%), Positives = 346/392 (88%), Gaps = 2/392 (0%) Query: 28 VAAVLATAGLSGNAAAQATIKIGEINSYKAQPAFLEPYRQGWEMALEEINAAGGVLGKKL 87 V+ V + A L A+AQ TIKIGEINSYKAQPAFL PY+QGW +ALE++NAAGGVLGK+L Sbjct: 13 VSTVCSFAAL--GASAQQTIKIGEINSYKAQPAFLGPYKQGWNLALEQVNAAGGVLGKQL 70 Query: 88 EVISRDDNGNPGDSVRVAEELVKREQVSLLFGGFLSNTGLALTDYARQRKIFFLAAEPLT 147 EVISRDD GNPGD+VRVA+EL+ REQV LLFGGFLSNTGLAL D+A+Q+KIFFLAAEPLT Sbjct: 71 EVISRDDGGNPGDTVRVAQELIAREQVQLLFGGFLSNTGLALADFAKQKKIFFLAAEPLT 130 Query: 148 DKIVWHNGNKYTYRLRPSTYMLVASLVKDAAKLKKKRWAIVYPNYEYGQSAVASFKTLMK 207 DKIVW +GNKYTYRLRPSTYM VA LV +AAKLKKKRWAIVYPNYEYGQSAVA+FK L+ Sbjct: 131 DKIVWADGNKYTYRLRPSTYMQVAMLVPEAAKLKKKRWAIVYPNYEYGQSAVATFKKLLT 190 Query: 208 AAQPDIEFVAEQAAPLGKIDAGAVTQALADAKPDAIFNVLFATDLGKFVREGNTRGLFEG 267 AAQPD++FV EQA PLG +DAGAVTQA+ADAKPDAIFNVLFA DLGKFVREGNTRGLF+ Sbjct: 191 AAQPDVQFVVEQATPLGNVDAGAVTQAIADAKPDAIFNVLFAADLGKFVREGNTRGLFKD 250 Query: 268 REVVSLLSGEPEYLDPLRAEAPSNWLVTGYPWYAINTPEHKKFVDAYRKKFNDYPRNGSL 327 R VVSLL+GEP+YLDPL AEAP+ W+VTGYPWY+I+T +K+FVDAY+ +++DYPR GS+ Sbjct: 251 RAVVSLLTGEPDYLDPLGAEAPTGWIVTGYPWYSIDTAANKQFVDAYKARYHDYPRVGSV 310 Query: 328 VGYSALMSIAAGLKKAGSADSDKLATAFSALRVETPVATITYRAQDHQSTLGAFVGRTGV 387 VGYSALMSIA G+KKAGS D DKLA AF L V+TP ITYRAQD+QST+GA+VG TGV Sbjct: 311 VGYSALMSIADGIKKAGSTDPDKLAAAFKGLNVQTPFGPITYRAQDNQSTMGAYVGVTGV 370 Query: 388 KDGKGIMSSFVYVDGASLQPSDAEVKKLRAVD 419 KDGKG+M+S+ YVDGAS+QPSDAEVKKLR D Sbjct: 371 KDGKGVMTSYRYVDGASVQPSDAEVKKLRPAD 402 >B1G0Y1.1 B1G0Y1_9BURK Extracellular ligand-binding receptor Length = 402 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 302/408 (74%), Positives = 353/408 (86%), Gaps = 9/408 (2%) Query: 9 MNSRLRFTFSFTYALQFAAVAAVLATAGLSGNAAAQATIKIGEINSYKAQPAFLEPYRQG 68 M +R R+ T ++ V++ A NA Q TIKIGEINSYKAQPAFL PY+ G Sbjct: 1 MTTRARWISRLT-------LSTVVSFAAFGANA--QQTIKIGEINSYKAQPAFLGPYKNG 51 Query: 69 WEMALEEINAAGGVLGKKLEVISRDDNGNPGDSVRVAEELVKREQVSLLFGGFLSNTGLA 128 W +ALE+IN AGGVLGKKLEV+SRDDNGNPGD++RVA+EL+ REQV LLFGGFLSNTGLA Sbjct: 52 WNLALEQINGAGGVLGKKLEVVSRDDNGNPGDTIRVAQELIAREQVQLLFGGFLSNTGLA 111 Query: 129 LTDYARQRKIFFLAAEPLTDKIVWHNGNKYTYRLRPSTYMLVASLVKDAAKLKKKRWAIV 188 LTD+A+Q+KIFFLAAEPLTDKIVW +GNKYTYRLRPSTYM VA LV +AAKLKKKRWA+V Sbjct: 112 LTDFAKQKKIFFLAAEPLTDKIVWADGNKYTYRLRPSTYMQVAMLVPEAAKLKKKRWALV 171 Query: 189 YPNYEYGQSAVASFKTLMKAAQPDIEFVAEQAAPLGKIDAGAVTQALADAKPDAIFNVLF 248 YPNYEYGQSAVA+FK L+ AAQPD++FVAEQA PLG +DAGAVTQALADAKPDAIFNVLF Sbjct: 172 YPNYEYGQSAVATFKKLLTAAQPDVQFVAEQATPLGNVDAGAVTQALADAKPDAIFNVLF 231 Query: 249 ATDLGKFVREGNTRGLFEGREVVSLLSGEPEYLDPLRAEAPSNWLVTGYPWYAINTPEHK 308 DLGKFVREGNTRGLF+ R VVSLL+GEP+YLDPL AEAP+ W+VTGYPWY+I+T ++ Sbjct: 232 GADLGKFVREGNTRGLFKDRTVVSLLTGEPDYLDPLGAEAPAGWIVTGYPWYSIDTAANR 291 Query: 309 KFVDAYRKKFNDYPRNGSLVGYSALMSIAAGLKKAGSADSDKLATAFSALRVETPVATIT 368 KFVDAY+ K++DYPR GS+VGYSALMSIAAG+KKAGSAD+DKLA AF L V+TP IT Sbjct: 292 KFVDAYQAKYHDYPRLGSVVGYSALMSIAAGIKKAGSADTDKLAAAFKGLAVDTPFGPIT 351 Query: 369 YRAQDHQSTLGAFVGRTGVKDGKGIMSSFVYVDGASLQPSDAEVKKLR 416 YRAQD+QST+GA+VG TG+KDGKG+M+S+ Y+DGAS+QPSDA+VKKLR Sbjct: 352 YRAQDNQSTMGAYVGVTGLKDGKGVMTSYRYIDGASVQPSDADVKKLR 399