BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0002.p (478 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZ37.1 D8IZ37_HERSS Methyl-accepting chemotaxis protein I, ser... 653 0.0 Q1R1L0.1 Q1R1L0_CHRSD Methyl-accepting chemotaxis sensory transd... 413 e-113 E5UEG5.1 E5UEG5_ALCXX Histidine kinase 388 e-106 F2LHE1.1 F2LHE1_BURGA Methyl-accepting chemotaxis protein I 377 e-102 C5SZU3.1 C5SZU3_ACIDE Methyl-accepting chemotaxis sensory transd... 363 4e-98 >D8IZ37.1 D8IZ37_HERSS Methyl-accepting chemotaxis protein I, serine sensor receptor protein Length = 554 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/473 (73%), Positives = 393/473 (83%), Gaps = 4/473 (0%) Query: 6 RPA-ISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGS 64 +PA +SVA RL +SFA+VLAMM LTV+SI +VNAI SL+T+SDDNNVKQRYAINFRGS Sbjct: 7 KPASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGS 66 Query: 65 VHDRAIALRDLTLVGDAEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEERADL 124 VHDRAIALRDLTLVGD E+KDV LI KLD DYQ+SA+ LD +F+G + VR EERA L Sbjct: 67 VHDRAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQ---VRPEERASL 123 Query: 125 AAIKAIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQMTQ 184 +IKA+EARAMPL +VIAAR+SGD +GARQ+ML Q KPAFV+WLA+IN FID++E M+Q Sbjct: 124 DSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQ 183 Query: 185 VESAHARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFAVDRG 244 ESA AR +A F+A MLVLLA A+ G VLA LITR IR ALGAEP +V+ELA AVDRG Sbjct: 184 AESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRG 243 Query: 245 ELYHAIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGNRDLAS 304 ELYHA SIMA LSEMS NLR TVT VRDAA V IS+QIA GNRDLA+ Sbjct: 244 ELYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLAA 303 Query: 305 RTEDQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVVHTMDS 364 RTEDQAASLEETASAMEQLT+TVKQND++ARQANQLA NAS IA QGGAIV VV TM + Sbjct: 304 RTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAA 363 Query: 365 INTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAA 424 IN SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRS+AA Sbjct: 364 INVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAA 423 Query: 425 AKEIKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 AKE+K LIDDSV+ V+ G LV QAG+TMEQIVASV+ VTDV+GEIS+ASHEQ Sbjct: 424 AKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQ 476 >Q1R1L0.1 Q1R1L0_CHRSD Methyl-accepting chemotaxis sensory transducer Length = 593 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 241/469 (51%), Positives = 320/469 (68%), Gaps = 7/469 (1%) Query: 10 SVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGSVHDRA 69 ++ AR+ FA VL +M LT + +VN I+ S+ I+D N+VKQ+YA++FRGSVHDRA Sbjct: 26 TIRARMTAGFASVLLLMIILTAEGVREVNLIDHSMKVINDVNSVKQQYAVDFRGSVHDRA 85 Query: 70 IALRDLTLVGD-AEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEERADLAAIK 128 IA+RD LV D A++ ++ I +L+ DY+++A + IFS NV AEER LAAI+ Sbjct: 86 IAVRDAVLVDDEADLAPILADIRRLEGDYREAATGMREIFSE---SNVTAEERNALAAIQ 142 Query: 129 AIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQMTQVESA 188 I+A MPL++ V+ R +GD GA Q++L + PAF WL IN FI LQE++ E+ Sbjct: 143 EIQATTMPLIEEVLERRQAGDIAGAEQLLLDEAAPAFSTWLDDINTFITLQEELNAAETG 202 Query: 189 HARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFAVDRGELYH 248 ARN+A FQ M++L A+ G ++ATL+TR + R GAEP +V+ A AV G+L Sbjct: 203 FARNIAENFQITMILLCLGALVIGGLVATLLTRLLLREFGAEPYEVKAFAEAVGNGDLTR 262 Query: 249 AIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGNRDLASRTED 308 + SIMAA M+ L++TV EVR +A V S QIAEGN DLASRTE Sbjct: 263 QVSLKPQY---RNSIMAAQVAMAERLKKTVWEVRGSAESVATNSEQIAEGNNDLASRTEQ 319 Query: 309 QAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVVHTMDSINTS 368 QA+SL ETASAME+L STV+ N DNA +A + A NAS IA +GG +V QVV TM I+ S Sbjct: 320 QASSLAETASAMEELGSTVQHNADNAAEARKQAANASSIAEEGGEVVTQVVQTMRDIDAS 379 Query: 369 SRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKEI 428 S ++ DII +IDGIAFQTNILALNA+VEAARAGE GRGFAVVA EVR LA RS+A+AKEI Sbjct: 380 SNEVADIITMIDGIAFQTNILALNASVEAARAGEHGRGFAVVAQEVRELASRSAASAKEI 439 Query: 429 KSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 +LI + ++V+ G +L +AG+T E +VASVK VT+++ EIS A+ EQ Sbjct: 440 NTLITANRKRVEQGTELATRAGKTTEDVVASVKRVTELMEEISNATAEQ 488 >E5UEG5.1 E5UEG5_ALCXX Histidine kinase Length = 546 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/478 (47%), Positives = 311/478 (65%), Gaps = 9/478 (1%) Query: 2 NQSP-RPAISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAIN 60 + SP R S + + F +VL +M LTV+ I VN + G+L+ I+D + VKQRYAI Sbjct: 4 SHSPSRGVRSTGGSIMLGFTVVLCLMVLLTVVGITLVNRMNGALAAINDVHGVKQRYAIT 63 Query: 61 FRGSVHDRAIALRDLTLVGDAEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEE 120 FRGSVHDR+IALRD L AE++ ++ I +L Y ++A P+DA+F+ +G +V A+E Sbjct: 64 FRGSVHDRSIALRDAVLAAPAELRTLVAEIDRLKRQYDEAAAPMDALFA--QGADVSAQE 121 Query: 121 RADLAAIKAIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQE 180 R LA IKAIE R +P+VQR++ A GD AR +L Q +P FV+WLA+IN+ IDL+E Sbjct: 122 RETLAGIKAIETRTLPVVQRLLTALERGDAAQARP-LLDQARPLFVQWLAAINRMIDLEE 180 Query: 181 QMTQVESAHARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFA 240 ++ + +S AR + FQ LML L A+ G LA LI R I RALGAEPA ++ +A Sbjct: 181 RLMKDQSDMARRVGVDFQQLMLALTGAAILLGAGLAWLIARRITRALGAEPATLKRIAQT 240 Query: 241 VDRGELYHAIEQDKDLGKGH-ESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGN 299 V G+L IE + +G SI+A L+ M NL V VR A V+ +S Q+A+GN Sbjct: 241 VSAGDLASPIE----VRQGDASSILATLAGMQRNLASVVGGVRQHADAVSVVSVQLAQGN 296 Query: 300 RDLASRTEDQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVV 359 DL++RT D+A +L +TA +ME+LT VK+N +A++A +A A A QG + V+ Sbjct: 297 ADLSARTSDEARALRQTAESMEELTGAVKRNARDAQEAGDMAGQAMDAARQGSQTMHAVI 356 Query: 360 HTMDSINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQ 419 TM+ ++ +S +I DI VI+GIAFQTNILALNAAVEAARAGEQG+GFAVVA+EVRSLAQ Sbjct: 357 DTMEHLSRASAQISDITSVIEGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQ 416 Query: 420 RSSAAAKEIKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 RS+ AAKEI +LI S + V G VG AG+TM+ I+ ++ T + I AS Q Sbjct: 417 RSATAAKEINALISQSADTVRQGVDRVGAAGQTMDLILEAITQTTATMNGIVQASVAQ 474 >F2LHE1.1 F2LHE1_BURGA Methyl-accepting chemotaxis protein I Length = 537 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/462 (46%), Positives = 303/462 (65%), Gaps = 5/462 (1%) Query: 10 SVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGSVHDRA 69 SV +L +SF ++L M AL ++++++V I L I D N VK+RYAINFRGSVHDR+ Sbjct: 7 SVRGKLVLSFGMMLLGMVALAIIAVVQVQNIRERLDDIIDLNGVKERYAINFRGSVHDRS 66 Query: 70 IALRDLTLVGDAEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEERADLAAIKA 129 IALRD+ LVG E+ V+ I KL DY++SA+P + +F NV EE++ I+ Sbjct: 67 IALRDVILVGPDELPTVVEHIRKLQRDYEESARPFETVFL--PSDNVSPEEKSIYQGIRR 124 Query: 130 IEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQMTQVESAH 189 +A+AMPL+ +VI +T G +D AR+++L +PA V WLA+IN ID +E ++ E Sbjct: 125 AQAQAMPLIDQVIELQTQGQSDAARKVLLDGARPALVAWLAAINTMIDFEESLSANEGLE 184 Query: 190 ARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFAVDRGELYHA 249 AR ++ F+ +M + A+A A G+ +A L+TR+I LGA+P ++ E A A+ G L Sbjct: 185 AREISREFKIVMAAITALACALGLGIAWLVTRNIAATLGADPREMIEFAEAIRGGNLSVP 244 Query: 250 IEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGNRDLASRTEDQ 309 G+ S+MAA+++M +L V VR+AA V + S +IA G DL++RT Q Sbjct: 245 ---SPARGEDEASVMAAVTKMRDSLAEIVARVREAADGVVQASREIAHGTNDLSARTSKQ 301 Query: 310 AASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVVHTMDSINTSS 369 A +LE+ A+ + ++V +N NA A+QLA AS A GG VG+VV TM I++SS Sbjct: 302 AVALEQATHALGEFDASVSENASNASHADQLANQASSKAGNGGDAVGRVVDTMRDIDSSS 361 Query: 370 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKEIK 429 +I +IIGVID IAFQTNILALNAAVEAA+AG GRGFAVVA EVR LAQ+S+AAAKEIK Sbjct: 362 HRIGEIIGVIDAIAFQTNILALNAAVEAAKAGGHGRGFAVVAGEVRILAQKSAAAAKEIK 421 Query: 430 SLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEIS 471 SL+ DS +V G +LV AG T+ +++ S ++VT ++ EI+ Sbjct: 422 SLVRDSNARVSDGGRLVEVAGSTIAEVIQSSRNVTSIMSEIN 463 >C5SZU3.1 C5SZU3_ACIDE Methyl-accepting chemotaxis sensory transducer Length = 559 Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 226/475 (47%), Positives = 314/475 (66%), Gaps = 18/475 (3%) Query: 9 ISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGSVHDR 68 ++VAARL F ++LA++ ALT ++++KVN I+ +L +D + QRYAINFRGS HDR Sbjct: 6 MTVAARLYAGFGLILALLVALTGIALVKVNRIDQALRANNDIHVQVQRYAINFRGSAHDR 65 Query: 69 AIALRDLTL-VGDAEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEERADLAA- 126 +IA+RD+ L AE + I I L + Y QSA PL+ + + + A E L A Sbjct: 66 SIAVRDVVLSPSPAEREKEIATIAALADFYAQSAAPLEKLIT----RTGAAPELGQLYAD 121 Query: 127 IKAIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQMTQVE 186 I++ E++A+ + ++A +GDT A Q + Q KP +V+WLA+INK ID +E Q Sbjct: 122 IRSAESKAVATTRAIVAQVQAGDTAAA-QTLWTQAKPQYVQWLATINKLIDYKEARIQST 180 Query: 187 SAHARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFAVDRGEL 246 + A + A GF +M L +A+ V +A + R I R LGAEPA + ++A V +G+L Sbjct: 181 NQGAMDEASGFLGVMFSALLLALVLSVAVAWNVARSIVRQLGAEPAALADVASHVAQGDL 240 Query: 247 YH----AIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGNRDL 302 A+ Q S++A+L+ M ++L R V +VR A++ VT S +IA GN L Sbjct: 241 QPVAGAALAQPG-------SVLASLAAMQASLARVVGQVRQASNAVTVGSEEIAGGNAGL 293 Query: 303 ASRTEDQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVVHTM 362 RTE+QA++L++ A++MEQ+T++V+ N +ARQA Q+A +AS A +GGA+V QVV TM Sbjct: 294 LQRTEEQASNLQQAAASMEQMTASVRNNAGSARQATQVAASASEAAHKGGAVVAQVVSTM 353 Query: 363 DSINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSS 422 + I+ SS K+ DIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ Sbjct: 354 EEISASSHKMADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSA 413 Query: 423 AAAKEIKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 AAKEIK LID SV KV+ GA+LVG AG TM IV + V ++ EIS A+ EQ Sbjct: 414 NAAKEIKGLIDGSVAKVEQGARLVGDAGATMTDIVEQAQRVAGLIAEISNATAEQ 468