BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0004.p (364 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1W311.1 F1W311_9BURK Type IV fimbrial assembly, ATPase PilB 540 e-151 A6T2D9.1 A6T2D9_JANMA PilB type IV pilus assembly protein 536 e-150 A4G8R8.1 A4G8R8_HERAR Type 4 fimbrial assembly protein pilB 531 e-149 D5X4J2.1 D5X4J2_THIK1 Type IV-A pilus assembly ATPase PilB 505 e-141 D6CRC8.1 D6CRC8_THIS3 Type 4 fimbrial assembly protein pilB 502 e-140 >F1W311.1 F1W311_9BURK Type IV fimbrial assembly, ATPase PilB Length = 574 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 263/393 (66%), Positives = 308/393 (78%), Gaps = 46/393 (11%) Query: 17 PSLPDFDDASAVNYLQKILLDAINLGASDLHFEPFEKHCRIRFRIDGQLRDIVEPPLSMK 76 P + D DDA V +LQK+L+DAINLGASDLHFEPFEK RIRFR+DG LR+I +PPL++K Sbjct: 181 PGVADIDDAPVVKFLQKMLIDAINLGASDLHFEPFEKFYRIRFRVDGVLREIAQPPLAIK 240 Query: 77 DKLASHIKIISGLDIAEKRMPQDGRMKLSLSSTRAIDFRVSTLPTLFGEKIVMRILDASH 136 +KLAS IK+IS LDI+EKR+PQDGRMKL LS TR+IDFRVSTLPTLFGEKIVMRILD S Sbjct: 241 EKLASRIKVISKLDISEKRVPQDGRMKLVLSKTRSIDFRVSTLPTLFGEKIVMRILDGSQ 300 Query: 137 SQLGIDALGYNDAQKDLLLQAIRRPYGMVLMTGPTGSGKTVSLYSCLSLLNQPGTNISTV 196 +Q+GI+ALGY+ QKD L++AI+RPYGMVL+TGPTGSGKTVSLY+CL++LNQPG NI+T Sbjct: 301 AQMGIEALGYDADQKDTLMKAIQRPYGMVLVTGPTGSGKTVSLYTCLNILNQPGINIATA 360 Query: 197 EDPAEISLPGINQVNVNQRAGLTFPIALRAFLRQDPDVIMVGEIRDPETADIAVKAAQTG 256 EDPAEI+LPG+NQVN+N RAGLTFP+AL+AFLRQDPD+IMVGEIRD ETADIA+KAAQTG Sbjct: 361 EDPAEINLPGVNQVNINDRAGLTFPVALKAFLRQDPDIIMVGEIRDLETADIAIKAAQTG 420 Query: 257 HLVFSTLHTNDAPSTLTRLMNMGVPAFNVAS----------------------------- 287 H+VFSTLHTNDAPSTLTRLMNMGV FN+AS Sbjct: 421 HMVFSTLHTNDAPSTLTRLMNMGVAPFNIASSVILITAQRLTRRLCTCKVATEIPNEVLL 480 Query: 288 -----------------AAGCRRCGDTGYKGRVGIYQVMPISEAIEGLILAHAPAPDIEA 330 A GC RC +GYKGR+GIYQ+MPI+EAIE +IL+H A +IEA Sbjct: 481 EAGFLADDLDGSWKPYTAVGCERCSGSGYKGRLGIYQIMPITEAIERVILSHGTALEIEA 540 Query: 331 QAVREGVLTLRQAGLQKVREGLTSLEEILACTN 363 QA +GV TLRQ+GL KV+ GLTSLEEIL CTN Sbjct: 541 QAKLDGVRTLRQSGLVKVKLGLTSLEEILGCTN 573 >A6T2D9.1 A6T2D9_JANMA PilB type IV pilus assembly protein Length = 561 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 262/389 (67%), Positives = 305/389 (78%), Gaps = 46/389 (11%) Query: 21 DFDDASAVNYLQKILLDAINLGASDLHFEPFEKHCRIRFRIDGQLRDIVEPPLSMKDKLA 80 D DDA V +LQKIL+DAINLGASDLHFEPFEK RIRFR+DG LRDI +PPL++K+KLA Sbjct: 172 DIDDAPIVKFLQKILVDAINLGASDLHFEPFEKFYRIRFRVDGVLRDIAQPPLAIKEKLA 231 Query: 81 SHIKIISGLDIAEKRMPQDGRMKLSLSSTRAIDFRVSTLPTLFGEKIVMRILDASHSQLG 140 S IK+IS LDI+EKR+PQDGRMKL +S TR+IDFRVSTLPTLFGEKIVMRILD S +Q+G Sbjct: 232 SRIKVISKLDISEKRVPQDGRMKLVMSKTRSIDFRVSTLPTLFGEKIVMRILDGSQAQMG 291 Query: 141 IDALGYNDAQKDLLLQAIRRPYGMVLMTGPTGSGKTVSLYSCLSLLNQPGTNISTVEDPA 200 I+ALGY+ QK+ LL AI+RPYGMVL+TGPTGSGKTVSLY+CL++LN+PG NIST EDPA Sbjct: 292 IEALGYDPDQKETLLNAIQRPYGMVLVTGPTGSGKTVSLYTCLNILNKPGINISTAEDPA 351 Query: 201 EISLPGINQVNVNQRAGLTFPIALRAFLRQDPDVIMVGEIRDPETADIAVKAAQTGHLVF 260 EI+LPG+NQVNVN RAGLTFP+AL+AFLRQDPD+IMVGEIRD ETADIA+KAAQTGH+VF Sbjct: 352 EINLPGVNQVNVNDRAGLTFPVALKAFLRQDPDIIMVGEIRDLETADIAIKAAQTGHMVF 411 Query: 261 STLHTNDAPSTLTRLMNMGVPAFNVASA-------------------------------- 288 STLHTNDAP+TLTRLMNMGV FN+AS+ Sbjct: 412 STLHTNDAPATLTRLMNMGVAPFNIASSVILITAQRLARRLCSCKQTTVIPDEALLEAGF 471 Query: 289 --------------AGCRRCGDTGYKGRVGIYQVMPISEAIEGLILAHAPAPDIEAQAVR 334 GC RC +GYKGRVGIYQ+MPISE IEG+IL H + +IEAQA + Sbjct: 472 SEEDLDGTWLPYKPVGCERCSGSGYKGRVGIYQIMPISEEIEGIILNHGTSMEIEAQAKK 531 Query: 335 EGVLTLRQAGLQKVREGLTSLEEILACTN 363 +GV TLR++GL KV+ GLTSLEEIL CTN Sbjct: 532 DGVRTLRESGLVKVKLGLTSLEEILGCTN 560 >A4G8R8.1 A4G8R8_HERAR Type 4 fimbrial assembly protein pilB Length = 576 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 260/407 (63%), Positives = 311/407 (76%), Gaps = 52/407 (12%) Query: 3 QRASAPSSGLASASPSLPDFDDASAVNYLQKILLDAINLGASDLHFEPFEKHCRIRFRID 62 + +AP+ G A+ D DDA V +L KIL+DAINLGASDLHFEPFEK RIRFR+D Sbjct: 175 EELAAPAEGGAT------DIDDAPVVKFLHKILIDAINLGASDLHFEPFEKFYRIRFRVD 228 Query: 63 GQLRDIVEPPLSMKDKLASHIKIISGLDIAEKRMPQDGRMKLSLSSTRAIDFRVSTLPTL 122 G LRDI +PPL++K+KLAS IK+IS LDI+EKR+PQDGRMKL +S TR+IDFRVSTLPTL Sbjct: 229 GVLRDIAQPPLAIKEKLASRIKVISKLDISEKRVPQDGRMKLVMSKTRSIDFRVSTLPTL 288 Query: 123 FGEKIVMRILDASHSQLGIDALGYNDAQKDLLLQAIRRPYGMVLMTGPTGSGKTVSLYSC 182 FGEKIVMRILD S +Q+GI+ALGY+ QK+ LL AI+RPYGMVL+TGPTGSGKTVSLY+C Sbjct: 289 FGEKIVMRILDGSQAQMGIEALGYDPDQKETLLNAIQRPYGMVLVTGPTGSGKTVSLYTC 348 Query: 183 LSLLNQPGTNISTVEDPAEISLPGINQVNVNQRAGLTFPIALRAFLRQDPDVIMVGEIRD 242 L++LN+PG NIST EDPAEI+LPG+NQVNVN RAGLTFP+AL+AFLRQDPD+IMVGEIRD Sbjct: 349 LNILNKPGINISTAEDPAEINLPGVNQVNVNDRAGLTFPVALKAFLRQDPDIIMVGEIRD 408 Query: 243 PETADIAVKAAQTGHLVFSTLHTNDAPSTLTRLMNMGVPAFNVASA-------------- 288 ETADIA+KAAQTGH+VFSTLHTNDAP+TLTRLMNMGV FN+AS+ Sbjct: 409 LETADIAIKAAQTGHMVFSTLHTNDAPATLTRLMNMGVAPFNIASSVILITAQRLVRRLC 468 Query: 289 --------------------------------AGCRRCGDTGYKGRVGIYQVMPISEAIE 316 GC RC +GYKGR+G+YQ+MPISE IE Sbjct: 469 TCKQTTVIPDEALLEAGFTEDDLDGTWLPYKPVGCERCSGSGYKGRLGVYQIMPISEEIE 528 Query: 317 GLILAHAPAPDIEAQAVREGVLTLRQAGLQKVREGLTSLEEILACTN 363 +IL H + +IE QA ++GV +LR++GL KV++GLTSLEEIL CTN Sbjct: 529 HIILNHGTSLEIETQAKKDGVRSLRESGLVKVKQGLTSLEEILGCTN 575 >D5X4J2.1 D5X4J2_THIK1 Type IV-A pilus assembly ATPase PilB Length = 579 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/390 (63%), Positives = 298/390 (76%), Gaps = 47/390 (12%) Query: 21 DFDDASAVNYLQKILLDAINLGASDLHFEPFEKHCRIRFRIDGQLRDIVEPPLSMKDKLA 80 + DDA V +LQK+L+DAIN+ ASDLHFEPFE RIRFR+DG+LR+I +PP S+K+KLA Sbjct: 189 EVDDAPVVRFLQKMLIDAINMRASDLHFEPFEHFYRIRFRVDGELREIAQPPASIKEKLA 248 Query: 81 SHIKIISGLDIAEKRMPQDGRMKLSLSSTRAIDFRVSTLPTLFGEKIVMRILDASHSQLG 140 S IK+IS LDIAE+R+PQDGRMKL +S ++IDFRVSTLPTL+GEKIVMRILD+S ++LG Sbjct: 249 SRIKVISKLDIAERRVPQDGRMKLRISPEKSIDFRVSTLPTLYGEKIVMRILDSSSAKLG 308 Query: 141 IDALGYNDAQKDLLLQAIRRPYGMVLMTGPTGSGKTVSLYSCLSLLNQPGTNISTVEDPA 200 IDALGY +++ LL+AI RPYGM+L+TGPTGSGKTVSLYSCL++LNQPG NIST EDPA Sbjct: 309 IDALGYEPEEREKLLRAIHRPYGMILVTGPTGSGKTVSLYSCLNILNQPGVNISTAEDPA 368 Query: 201 EISLPGINQVNVNQRAGLTFPIALRAFLRQDPDVIMVGEIRDPETADIAVKAAQTGHLVF 260 EI+LPGINQVNVN++AGL F ALRAFLRQDPD+IMVGEIRD ETADI++KAAQTGHLV Sbjct: 369 EINLPGINQVNVNEKAGLNFANALRAFLRQDPDIIMVGEIRDLETADISIKAAQTGHLVL 428 Query: 261 STLHTNDAPSTLTRLMNMGVPAFNVAS--------------------------------- 287 ST+HTNDAP+TLTRLMNMGVPAFN+AS Sbjct: 429 STVHTNDAPTTLTRLMNMGVPAFNIASSVILITAQRLARKLCTQCKTPVDLPAQTLLEAG 488 Query: 288 --------------AAGCRRCGDTGYKGRVGIYQVMPISEAIEGLILAHAPAPDIEAQAV 333 A C CG TGYKGRVGIYQVMPI+E I+ +IL H A DI QA Sbjct: 489 FREEDLDGSWKPYKAGKCNACGGTGYKGRVGIYQVMPITEEIQRIILNHGTAMDIAQQAR 548 Query: 334 REGVLTLRQAGLQKVREGLTSLEEILACTN 363 +EGV +LR++GL KV++G+TSLEEI+A +N Sbjct: 549 KEGVRSLRESGLIKVKQGVTSLEEIIAVSN 578 >D6CRC8.1 D6CRC8_THIS3 Type 4 fimbrial assembly protein pilB Length = 579 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/390 (63%), Positives = 298/390 (76%), Gaps = 47/390 (12%) Query: 21 DFDDASAVNYLQKILLDAINLGASDLHFEPFEKHCRIRFRIDGQLRDIVEPPLSMKDKLA 80 + DDA V +LQK+L+DAIN+ ASDLHFEPFE RIRFR+DG+LR+I +PP S+K+KLA Sbjct: 189 EVDDAPVVRFLQKMLIDAINMRASDLHFEPFEHFYRIRFRVDGELREIAQPPASIKEKLA 248 Query: 81 SHIKIISGLDIAEKRMPQDGRMKLSLSSTRAIDFRVSTLPTLFGEKIVMRILDASHSQLG 140 S IK+IS LDIAE+R+PQDGRMKL +S ++IDFRVSTLPTL+GEKIVMRILD+S ++LG Sbjct: 249 SRIKVISKLDIAERRVPQDGRMKLRISPEKSIDFRVSTLPTLYGEKIVMRILDSSSAKLG 308 Query: 141 IDALGYNDAQKDLLLQAIRRPYGMVLMTGPTGSGKTVSLYSCLSLLNQPGTNISTVEDPA 200 IDALGY +++ LL+AI RPYGM+L+TGPTGSGKTVSLYSCL++LNQPG NIST EDPA Sbjct: 309 IDALGYEPEEREKLLRAIHRPYGMILVTGPTGSGKTVSLYSCLNILNQPGVNISTAEDPA 368 Query: 201 EISLPGINQVNVNQRAGLTFPIALRAFLRQDPDVIMVGEIRDPETADIAVKAAQTGHLVF 260 EI+LPGINQVNVN++AGL F ALRAFLRQDPD+IMVGEIRD ETADI++KAAQTGH+V Sbjct: 369 EINLPGINQVNVNEKAGLNFANALRAFLRQDPDIIMVGEIRDLETADISIKAAQTGHMVL 428 Query: 261 STLHTNDAPSTLTRLMNMGVPAFNVAS--------------------------------- 287 ST+HTNDAP+TLTRLMNMGVPAFN+AS Sbjct: 429 STVHTNDAPTTLTRLMNMGVPAFNIASSVILITAQRLARKLCTQCKTPVDLPAQTLLEAG 488 Query: 288 --------------AAGCRRCGDTGYKGRVGIYQVMPISEAIEGLILAHAPAPDIEAQAV 333 A C CG +GYKGRVGIYQVMPI+E I+ +IL H A DI QA Sbjct: 489 FREEDLDGSWKPYKAGKCNACGGSGYKGRVGIYQVMPITEEIQRIILNHGTAMDIAQQAR 548 Query: 334 REGVLTLRQAGLQKVREGLTSLEEILACTN 363 +EGV +LR++GL KV++G+TSLEEI+A +N Sbjct: 549 KEGVRSLRESGLIKVKQGVTSLEEIIAVSN 578