BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0454.p (247 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9IA98.1 A9IA98_BORPD Transcriptional regulator, AraC family 276 1e-72 A2VR73.1 A2VR73_9BURK AraC-type DNA-binding domain-containing pr... 249 2e-64 B1JZJ0.1 B1JZJ0_BURCC Transcriptional regulator, AraC family 249 3e-64 D5NKY1.1 D5NKY1_9BURK Transcriptional regulator, AraC family 232 3e-59 E5U8J8.1 E5U8J8_ALCXX Putative uncharacterized protein 224 1e-56 >A9IA98.1 A9IA98_BORPD Transcriptional regulator, AraC family Length = 243 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 132/233 (56%), Positives = 172/233 (73%) Query: 11 DYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVDHELHAVGAVA 70 DY+ G REIWHSHEQ QLV+ATSGVVR+LT G W L P +A+WI PGVDHELH +G VA Sbjct: 6 DYEHGSREIWHSHEQGQLVHATSGVVRVLTSQGGWTLAPRQALWIAPGVDHELHMIGQVA 65 Query: 71 LRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALIAPLLLRALQD 130 +R + EPDA WL A+C I V+ LL ELI+ ML DP Y P+S AA+I PLLLR LQ+ Sbjct: 66 MRWLRIEPDAAPWLWAECRQIRVTPLLRELILKMLQDPPVYPPESNAAMIVPLLLRQLQE 125 Query: 131 APAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLARHFRDETGLSF 190 A G LPLP D RL ++CE L+ P NN+ + + GE+ G S RTL+R F+++TGL+F Sbjct: 126 AEVIVHGKLPLPRDKRLLKVCEVLIRSPANNDPMALLGERAGTSVRTLSRLFKEQTGLTF 185 Query: 191 GQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQRYL 243 QWRQQ+R+SEAV +L L + ++ VA+ +GYA+ +AF TMFR+++G TPQRY+ Sbjct: 186 VQWRQQLRLSEAVCQLSLGQSVSSVAQDMGYATANAFSTMFRRTLGATPQRYM 238 >A2VR73.1 A2VR73_9BURK AraC-type DNA-binding domain-containing protein Length = 294 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 126/245 (51%), Positives = 163/245 (66%) Query: 1 MPRPVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVD 60 +PR V +Y+ G R WH H QLV+A GVVR+LTPA +W LPPSRA+W+ VD Sbjct: 49 LPRQVAATLVNYRQGERVTWHQHRHGQLVFAAKGVVRVLTPARTWTLPPSRAVWLPSDVD 108 Query: 61 HELHAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALI 120 HELHAVG AL SVY EP+ W + ++I VS LL EL + ++ Y SRA L Sbjct: 109 HELHAVGDTALCSVYMEPEVFPWPWEEPAVIAVSALLRELALTVVDGADTYTATSRAGLA 168 Query: 121 APLLLRALQDAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLAR 180 A LL++ L + P+ +PLP D RL ++CE +M+DP ++ TL+ WGEQFG S RTLAR Sbjct: 169 ASLLMKVLAETPSLAEPGVPLPRDERLLKLCEHMMNDPASDLTLDFWGEQFGASGRTLAR 228 Query: 181 HFRDETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQ 240 ETGL+F WRQQMRV+EA+ RL L + +ARVA+ LGY S SAFI MFR+ G +PQ Sbjct: 229 RLHAETGLTFVAWRQQMRVAEAMTRLALGQSVARVAKDLGYRSASAFIVMFRRITGESPQ 288 Query: 241 RYLTS 245 RYL++ Sbjct: 289 RYLSA 293 >B1JZJ0.1 B1JZJ0_BURCC Transcriptional regulator, AraC family Length = 261 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/245 (51%), Positives = 162/245 (66%) Query: 1 MPRPVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVD 60 +PR V +Y+ G R WH H QLV+A GVVR+LTPA +W LPPSRA+W+ VD Sbjct: 16 LPRQVAATLVNYRQGERVTWHQHRHGQLVFAAKGVVRVLTPARTWTLPPSRAVWLPSDVD 75 Query: 61 HELHAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALI 120 HELHAVG AL SVY EP+ W + ++I VS LL EL + ++ Y SRA L Sbjct: 76 HELHAVGDTALCSVYMEPEVFPWPWEEPAVIAVSALLRELALTVVDGADTYTATSRAGLA 135 Query: 121 APLLLRALQDAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLAR 180 A LL++ L + P+ +PLP D RL ++CE +M+DP ++ TL+ WGEQFG S RTLAR Sbjct: 136 ASLLMKVLAETPSLAEPGVPLPRDERLLKLCEHMMNDPASDLTLDFWGEQFGASGRTLAR 195 Query: 181 HFRDETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQ 240 ETGL+F WRQQMRV+EA+ RL L + +ARVA+ LGY S SAFI MFR+ G +PQ Sbjct: 196 RLHAETGLTFVAWRQQMRVAEAMTRLALGQSVARVAKDLGYRSASAFIVMFRRITGESPQ 255 Query: 241 RYLTS 245 RYL + Sbjct: 256 RYLAA 260 >D5NKY1.1 D5NKY1_9BURK Transcriptional regulator, AraC family Length = 269 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/244 (47%), Positives = 163/244 (66%), Gaps = 4/244 (1%) Query: 3 RPVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVDHE 62 R V+ +A DY DG EI H H +AQLVYATSG+VR +TP G W+L P A+ I ++HE Sbjct: 16 RKVIAQAIDYVDGTHEIAHIHHRAQLVYATSGIVRAITPLGLWMLTPGNALLIGSQIEHE 75 Query: 63 LHAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALIAP 122 LH VG V++R++Y EP +++ +C +I V LL I+GM + A +SR ALI P Sbjct: 76 LHMVGQVSMRTLYIEPASLAPQKQECRVIPVGDLLRATILGMFDSDPDEAGESRTALIVP 135 Query: 123 LLLRALQ----DAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTL 178 L+LR L+ A A LPLP + RLR ICE L+ P +N+TLE+W ++ G S+RT+ Sbjct: 136 LILRLLEDAADAADGARTARLPLPANVRLRNICESLIAQPASNDTLELWADRVGASSRTV 195 Query: 179 ARHFRDETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTT 238 AR FR ETG+SFGQWR+Q+R++EA+ +L + ++VA+ LGYA F MFR++ G+T Sbjct: 196 ARLFRQETGMSFGQWREQLRLAEAMSKLSVGHAASQVAQDLGYADVRTFTVMFRRAFGST 255 Query: 239 PQRY 242 PQ++ Sbjct: 256 PQQF 259 >E5U8J8.1 E5U8J8_ALCXX Putative uncharacterized protein Length = 252 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 115/244 (47%), Positives = 156/244 (63%), Gaps = 3/244 (1%) Query: 4 PVVVRAFDYQDGYREIWHSHEQAQLVYATSGVVRILTPAGSWLLPPSRAMWIVPGVDHEL 63 PVV R+F Y+DG R+ HSHE+ QL+Y+ +G++R++T G+WLL P RA+WI PGV HE+ Sbjct: 10 PVVARSFHYEDGQRQEPHSHERIQLMYSPTGIMRVMTEDGAWLLAPMRALWIPPGVAHEV 69 Query: 64 HAVGAVALRSVYFEPDAVSWLSADCSMIEVSGLLHELIVGMLADPLEYAPDSRAALIAPL 123 VG V +RS + PDA WL D ++V+ L+ ELI+ + + P R L A L Sbjct: 70 RMVGQVTMRSAFIAPDAAPWLWKDTCALDVAPLMRELILALNQPAARHGPVQR--LSAEL 127 Query: 124 LLRALQDAPAAHGGLLPLPTDARLRQICEKLMHDPGNNNTLEVWGEQFGLSTRTLARHFR 183 LL L H L PLP D RLR++C ++ PGN++TLE WGE+ G S RTLAR + Sbjct: 128 LLNLLAGTERQHRQL-PLPFDRRLRKVCAAVLQSPGNDDTLEQWGERMGASARTLARRMK 186 Query: 184 DETGLSFGQWRQQMRVSEAVYRLILKEPLARVAETLGYASQSAFITMFRKSMGTTPQRYL 243 DETG+SF WR Q+R+ E + RL+ + + VA LGYAS SAF+ MFR MG +P RYL Sbjct: 187 DETGMSFHNWRLQVRIDEGICRLLQGQSVVNVARALGYASASAFVYMFRNVMGVSPTRYL 246 Query: 244 TSLG 247 + Sbjct: 247 EQIA 250