BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0445.p (231 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1MGE9.1 Q1MGE9_RHIL3 Putative LysR family transcriptional regul... 186 2e-45 A8TML6.1 A8TML6_9PROT Putative LysR family transcriptional regul... 186 2e-45 C6AYI2.1 C6AYI2_RHILS Transcriptional regulator, LysR family 186 3e-45 Q98L81.1 Q98L81_RHILO Probable transcriptional regulator 185 5e-45 C8SF21.1 C8SF21_9RHIZ Transcriptional regulator, LysR family 184 7e-45 >Q1MGE9.1 Q1MGE9_RHIL3 Putative LysR family transcriptional regulator Length = 298 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 135/214 (63%), Gaps = 4/214 (1%) Query: 15 DQVDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLPRADKHVAGLRDGLID 74 + +DL + RT LRT++GFA ++ L R+ ++APG+ LRF+ + DK A LRDG +D Sbjct: 86 EALDLQRLVRTFTLRTSEGFAESFGPDLIARLGRQAPGVRLRFVQKPDKDSAPLRDGTVD 145 Query: 75 LEVGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLANFTAWPHISASRHGHN 134 LE G + G T E+ Q LFR F+GVVR HPL ++++ + + A HI SR G + Sbjct: 146 LETGVV--GGTTGPEVRAQALFRDRFIGVVRLGHPLCEREMTPSLYAAGQHIYVSRRGLD 203 Query: 135 SGPIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPELFARWAMQHLRLHIFRLP 194 GPIDDAL GL+R++ + GF +A+V+A +SD++A+ PE +H F LP Sbjct: 204 KGPIDDALNRLGLERQIATIVSGFSTALVLARNSDLIASVPERHT--GALRAGMHSFPLP 261 Query: 195 LATPEVEVSQSWHPRRHADPVHKWLRGLVRELCS 228 + TPE+ VS WHPR ADP H+WLRG VR+ C+ Sbjct: 262 VPTPEITVSLLWHPRMDADPAHRWLRGCVRDACA 295 >A8TML6.1 A8TML6_9PROT Putative LysR family transcriptional regulator Length = 299 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/230 (44%), Positives = 138/230 (60%), Gaps = 9/230 (3%) Query: 1 VDALAQEMRKVFM-TDQVDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLP 59 V L Q+ + V ++V+L+ + RT LRT DGF + + L RV EAPG+ LRF+ Sbjct: 71 VGQLVQDGQAVLRPAERVNLNRLVRTFTLRTRDGFVENFGSDLIARVCDEAPGVRLRFVE 130 Query: 60 RADKHVAGLRDGLIDLEVGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLAN 119 ++DK A LRDG +DLE G + E+ TQ+LFR FVGVVRA H L++ +IS Sbjct: 131 KSDKDSAALRDGNVDLETGVV--AGTAGPEIRTQMLFRDRFVGVVRAGHALSQGEISADR 188 Query: 120 FTAWPHISASRHGHNSGPIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPELFA 179 + HI SR G N+GP+DDAL GL R++ V GF +A+ +A SD++A PE Sbjct: 189 YVEGRHILVSRRGQNNGPVDDALARLGLTREIVTVVAGFSAALSLARGSDLIATVPE--- 245 Query: 180 RWAMQHLR--LHIFRLPLATPEVEVSQSWHPRRHADPVHKWLRGLVRELC 227 +LR +H F +PL P++ VS WHPR ADP H+WLRG VRE C Sbjct: 246 -RQTGNLRAGMHSFPVPLDLPQITVSMLWHPRLDADPAHRWLRGCVRETC 294 >C6AYI2.1 C6AYI2_RHILS Transcriptional regulator, LysR family Length = 298 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 135/214 (63%), Gaps = 4/214 (1%) Query: 15 DQVDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLPRADKHVAGLRDGLID 74 + +DL + RT LRT++GFA ++ L R+ ++APG+ LRF+ + DK A LRDG +D Sbjct: 86 EALDLQRLVRTFTLRTSEGFAESFGPDLIARLGRQAPGVRLRFVQKPDKDSAPLRDGTVD 145 Query: 75 LEVGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLANFTAWPHISASRHGHN 134 LE G + G T E+ Q LFR F+GVVR HPL ++++ + + A HI SR G + Sbjct: 146 LETGVV--GGTTGPEVRAQALFRDRFIGVVRLGHPLCERELTPSLYAAGQHIYVSRRGLD 203 Query: 135 SGPIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPELFARWAMQHLRLHIFRLP 194 GPID+AL A GL+R++ + GF +A+ +A +SD++A+ PE +H F LP Sbjct: 204 KGPIDEALTALGLERQIATIVSGFSTALALARTSDLIASVPERHT--GALRAGMHSFPLP 261 Query: 195 LATPEVEVSQSWHPRRHADPVHKWLRGLVRELCS 228 + TPE+ VS WHPR ADP H+WLRG VR+ C+ Sbjct: 262 VPTPEITVSLLWHPRMDADPAHRWLRGCVRDACA 295 >Q98L81.1 Q98L81_RHILO Probable transcriptional regulator Length = 296 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 95/213 (44%), Positives = 129/213 (60%), Gaps = 5/213 (2%) Query: 17 VDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLPRADKHVAGLRDGLIDLE 76 +DLST++R LRTN+GF + L R+ EAP + LRF P++DK V LRD IDLE Sbjct: 88 LDLSTLDRVFTLRTNEGFVEEFGPCLVARIGAEAPEVRLRFAPKSDKDVMSLRDAAIDLE 147 Query: 77 VGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLANFTAWPHISASRHGHNSG 136 +G E T E+ Q LFR F+G VRA HPL++ ++ + A HIS SR G G Sbjct: 148 IGVAGE---TGPEVRIQALFRDRFIGAVRAGHPLSKGTVTPERYAAGRHISVSRRGREKG 204 Query: 137 PIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPELFARWAMQHLRLHIFRLPLA 196 PID+AL GL+R V + GF +A+ MA +S+++A+ PE A ++ FRLP+ Sbjct: 205 PIDEALGGLGLRRMVVCMVSGFSAALAMARASELIASVPERHTAGARAG--MYSFRLPVT 262 Query: 197 TPEVEVSQSWHPRRHADPVHKWLRGLVRELCSD 229 T EV +S WHPR ADP +WLR VRE+C+ Sbjct: 263 TVEVTISMLWHPRLDADPAQRWLRECVREVCAS 295 >C8SF21.1 C8SF21_9RHIZ Transcriptional regulator, LysR family Length = 296 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 97/214 (45%), Positives = 128/214 (59%), Gaps = 11/214 (5%) Query: 17 VDLSTVERTMVLRTNDGFAGAWAARLAQRVAQEAPGISLRFLPRADKHVAGLRDGLIDLE 76 +DLS+++ LRTN+GF + RL R+ +APG+ LRF P++DK LR+ +DLE Sbjct: 88 LDLSSLDNVYTLRTNEGFVEEFGPRLVARIEADAPGVRLRFAPKSDKDAMSLREAAVDLE 147 Query: 77 VGALHEGDDTSEELHTQLLFRTPFVGVVRADHPLARKKISLANFTAWPHISASRHGHNSG 136 +G E T E+ Q LFR F+GVVRA HP ++ + A HIS SR G G Sbjct: 148 IGVAGE---TGPEVRIQALFRDRFIGVVRAGHPFGEGPVTPERYAAGRHISVSRRGRERG 204 Query: 137 PIDDALEARGLQRKVRLVAPGFQSAMVMAASSDMVAAAPE---LFARWAMQHLRLHIFRL 193 PID+AL A GLQR V + GF +A+ MA SD++A+ PE + AR M H F L Sbjct: 205 PIDEALSALGLQRTVLCMVSGFSAALAMARGSDLIASVPERHTVGARAGM-----HSFPL 259 Query: 194 PLATPEVEVSQSWHPRRHADPVHKWLRGLVRELC 227 P+AT EV +S WHPR ADP +WLR VRE+C Sbjct: 260 PVATVEVTISMLWHPRLDADPAQRWLRDCVREVC 293