BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0438.p         (161 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

E6UZA8.1 E6UZA8_VARPD Transcriptional regulator, LysR family          166   1e-39
C5CVP4.1 C5CVP4_VARPS Transcriptional regulator, LysR family          161   3e-38
A1TIM7.1 A1TIM7_ACIAC Transcriptional regulator, LysR family          157   7e-37
E8U1F6.1 E8U1F6_ALIDB LysR substrate-binding protein                  154   3e-36
F0Q2R9.1 F0Q2R9_ACIAP Transcriptional regulator, LysR family          154   4e-36

>E6UZA8.1 E6UZA8_VARPD Transcriptional regulator, LysR family
          Length = 306

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 106/151 (70%), Gaps = 6/151 (3%)

Query: 1   MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60
           +GKVKS WM KPG++    +    +R+H+LA++ +L QG+ SGTG  YD W K Q V PS
Sbjct: 159 IGKVKSAWMCKPGVVQTTGT----VRLHDLARHRMLVQGNNSGTGRAYDAWMKDQGVQPS 214

Query: 61  NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120
           N I  S+LVAL GLTVSG+GVSYLP  CL  LV  G L V+E TP LP + YVA+++GE 
Sbjct: 215 NVIVVSNLVALTGLTVSGLGVSYLPRECLAPLVAAGMLSVIEVTPPLPVVRYVAMHKGEH 274

Query: 121 KSNFISSILMLAQECCEFSDLF--QIEDEAA 149
           +S   SSI+MLAQECC+F+ +F  Q EDE A
Sbjct: 275 RSALTSSIVMLAQECCDFTRMFQAQAEDEEA 305


>C5CVP4.1 C5CVP4_VARPS Transcriptional regulator, LysR family
          Length = 306

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/147 (51%), Positives = 104/147 (70%), Gaps = 4/147 (2%)

Query: 1   MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60
           +GKV+S WM KPG++    +    +R+HELA++ +L QG  SGTG  YD W K Q V P+
Sbjct: 159 IGKVQSAWMCKPGVV----AATGTVRLHELARHRMLVQGKNSGTGRAYDAWMKDQGVQPA 214

Query: 61  NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120
           ++I  S+LVAL GLTVSG+GVSYLP  CL  LV  G L V++  PALP + YVA+++GE 
Sbjct: 215 DTIVVSNLVALTGLTVSGLGVSYLPRRCLDPLVSAGMLAVIDVQPALPVVRYVAMHKGEH 274

Query: 121 KSNFISSILMLAQECCEFSDLFQIEDE 147
           +S   SSI+MLAQECC+F+ +FQ + +
Sbjct: 275 RSALTSSIVMLAQECCDFTRMFQAQQD 301


>A1TIM7.1 A1TIM7_ACIAC Transcriptional regulator, LysR family
          Length = 339

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 113/163 (69%), Gaps = 3/163 (1%)

Query: 1   MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60
           +G+V+S WM +PGL+   + G R +R+H+LA + +L QG+ SGTG IYD W + + V P+
Sbjct: 170 VGQVESAWMCRPGLVQPPAPG-RPVRLHDLAAHRLLVQGNASGTGRIYDGWMRERGVEPA 228

Query: 61  NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120
           +++  S+L+AL GLT+SG+GVSYLP  CL  LV  G L  +E  P LP +PYVA+ RGE+
Sbjct: 229 DTLVVSNLIALAGLTISGLGVSYLPRHCLAPLVAAGMLAEIEVQPPLPPVPYVAMVRGEQ 288

Query: 121 KSNFISSILMLAQECCEFSDLFQ--IEDEAAGIGHVHAGASPF 161
           +S  ++S++MLAQ CC+F+ +FQ  ++  +A  G + +   PF
Sbjct: 289 RSALVASVIMLAQSCCDFTRVFQAGVDVASAEPGRMESRPGPF 331


>E8U1F6.1 E8U1F6_ALIDB LysR substrate-binding protein
          Length = 300

 Score =  154 bits (390), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 103/143 (72%), Gaps = 4/143 (2%)

Query: 1   MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60
           +G V++ WM KP L      G ++ R+H+L+ +T LTQGDKSGTG+IY+ W  +  + P+
Sbjct: 160 LGSVENAWMCKPHLF----DGFKIRRLHDLSSHTFLTQGDKSGTGVIYNEWLDAVNMRPT 215

Query: 61  NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120
           N I C+SL+A+IG+TVSG+G SYLP   L  L++   L+V++ TP LP++ YVA Y+ E+
Sbjct: 216 NIIVCNSLLAIIGMTVSGLGFSYLPRESLEPLIQADYLQVLKVTPPLPKMNYVAAYKSEQ 275

Query: 121 KSNFISSILMLAQECCEFSDLFQ 143
           +S  ISSI++LAQECC+FS + Q
Sbjct: 276 RSTLISSIVLLAQECCDFSRVLQ 298


>F0Q2R9.1 F0Q2R9_ACIAP Transcriptional regulator, LysR family
          Length = 309

 Score =  154 bits (389), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 105/144 (72%), Gaps = 1/144 (0%)

Query: 1   MGKVKSVWMAKPGLLPRLSSGPRVLRMHELAQYTILTQGDKSGTGIIYDRWFKSQVVSPS 60
           +G+V+S WM +PGL+   + G R +R+H+LA + +L QG+ SGTG IYD W + + V P+
Sbjct: 160 VGQVESAWMCRPGLVQPPAPG-RPVRLHDLAAHRLLVQGNASGTGRIYDGWMRERGVEPA 218

Query: 61  NSISCSSLVALIGLTVSGMGVSYLPHLCLRSLVERGALEVVETTPALPEIPYVALYRGER 120
           +++  S+L+AL GLT+SG+GVSYLP  CL  LV  G L  ++  P LP +PYVA+ RGE+
Sbjct: 219 DTLVVSNLIALAGLTISGLGVSYLPRHCLAPLVAAGMLAEIDVQPPLPPVPYVAMVRGEQ 278

Query: 121 KSNFISSILMLAQECCEFSDLFQI 144
           +S  ++S++MLAQ CC+F+ +FQ+
Sbjct: 279 RSALVASVIMLAQSCCDFARVFQV 302