BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0413.p         (215 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B2JR50.1 B2JR50_BURP8 Transcriptional regulator, LysR family          196   2e-48
A9IUH7.1 A9IUH7_BORPD Transcriptional regulator, LysR-family          189   3e-46
B1G1G1.1 B1G1G1_9BURK Transcriptional regulator, LysR family          187   6e-46
E1TEG2.1 E1TEG2_BURSG Transcriptional regulator, LysR family          185   4e-45
E8YSV2.1 E8YSV2_9BURK Transcriptional regulator, LysR family          183   1e-44

>B2JR50.1 B2JR50_BURP8 Transcriptional regulator, LysR family
          Length = 312

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/175 (57%), Positives = 115/175 (65%), Gaps = 36/175 (20%)

Query: 1   MPLRLPPLSSLRFFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRL 60
           MPLRLPPL+SLRFFEAA R  SFKLAAAELNVTPSAVSHGIV LE+TLGV LF+R PR+L
Sbjct: 1   MPLRLPPLNSLRFFEAAARLGSFKLAAAELNVTPSAVSHGIVALEETLGVALFVREPRKL 60

Query: 61  TLTP------------------------------------XPTLASRWLLPRLQDFRTLW 84
           +LTP                                     PTLA+RWL+PRL DFR  W
Sbjct: 61  SLTPAGELYFPYIAEAFSLILTGTQRLPDGRTHRTISVSCAPTLAARWLVPRLHDFRAQW 120

Query: 85  PDTNVTVDTSPRQVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSPRSRQ 139
           P+ +V+VDTS RQV  P DGFDF IR+SR PV    W +LFGE+LVPVCSP  R+
Sbjct: 121 PNLDVSVDTSRRQVGFPVDGFDFGIRLSRGPVPGSDWNRLFGEKLVPVCSPACRE 175


>A9IUH7.1 A9IUH7_BORPD Transcriptional regulator, LysR-family
          Length = 301

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 112/174 (64%), Gaps = 36/174 (20%)

Query: 1   MPLRLPPLSSLRFFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRL 60
           MP RLPPLS+LRFFEAAGR  SFKLAAAELNVTPSAVSHGIV LEQTLGV+LF+R PR L
Sbjct: 1   MPRRLPPLSALRFFEAAGRLCSFKLAAAELNVTPSAVSHGIVGLEQTLGVDLFVRGPRGL 60

Query: 61  TLTP------------------------------------XPTLASRWLLPRLQDFRTLW 84
           +LTP                                     PTLASRWLLPRL  FR  W
Sbjct: 61  SLTPEGADYLLYVSEALSLIATATQRLPGGPDGRGISVSCAPTLASRWLLPRLHGFRARW 120

Query: 85  PDTNVTVDTSPRQVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSPRSR 138
           PD ++++DTS R V  P DGFDFAIRM+R  V   SW +LF E+LVPVCSP  R
Sbjct: 121 PDVHISLDTSQRHVGFPVDGFDFAIRMARGVVPSASWTRLFSEELVPVCSPAYR 174


>B1G1G1.1 B1G1G1_9BURK Transcriptional regulator, LysR family
          Length = 309

 Score =  187 bits (476), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 106/159 (66%), Gaps = 36/159 (22%)

Query: 13  FFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRLTLTP-------- 64
           FFEAAGRHQSFKLAAAELNVTPSAVSHGIV LE+TLGVELF+R PR ++LT         
Sbjct: 13  FFEAAGRHQSFKLAAAELNVTPSAVSHGIVGLEETLGVELFVREPRGISLTATGADYLSY 72

Query: 65  ----------------------------XPTLASRWLLPRLQDFRTLWPDTNVTVDTSPR 96
                                        PT ASRWLLPRLQ F+  WP+ NVTVDTS R
Sbjct: 73  VSEAFSLIAIGTQRLPNHRANRPIALSCAPTFASRWLLPRLQHFKARWPNANVTVDTSHR 132

Query: 97  QVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSP 135
           QV  P DGFDFAIR+SRAPVA  +W +LFGEQLVPVCSP
Sbjct: 133 QVGFPVDGFDFAIRLSRAPVAGAAWTRLFGEQLVPVCSP 171


>E1TEG2.1 E1TEG2_BURSG Transcriptional regulator, LysR family
          Length = 296

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 104/159 (65%), Gaps = 36/159 (22%)

Query: 13  FFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRLTLTP-------- 64
           FFEAAGRHQSFKLAAAELNVTPSAVSHGIV LE+ LGVELF+R PR ++LT         
Sbjct: 13  FFEAAGRHQSFKLAAAELNVTPSAVSHGIVGLEEALGVELFVREPRGISLTATGADYLSY 72

Query: 65  ----------------------------XPTLASRWLLPRLQDFRTLWPDTNVTVDTSPR 96
                                        PT ASRWLLPRLQ F+  WPD NVTVDTS R
Sbjct: 73  VSEAFSLIATGTQRLPNHRANRPIALSCAPTFASRWLLPRLQRFKARWPDVNVTVDTSHR 132

Query: 97  QVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSP 135
           QV  P DGFDFAIR+SRAPVA  +W +LFGE+ VPVCSP
Sbjct: 133 QVGFPVDGFDFAIRLSRAPVAGTAWTRLFGEEFVPVCSP 171


>E8YSV2.1 E8YSV2_9BURK Transcriptional regulator, LysR family
          Length = 308

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 96/159 (60%), Positives = 103/159 (64%), Gaps = 36/159 (22%)

Query: 13  FFEAAGRHQSFKLAAAELNVTPSAVSHGIVTLEQTLGVELFIRAPRRLTLTP-------- 64
           FFEAAGRHQSFKLAAAELNVTPSAVSHGIV LE+ LGVELF+R PR ++LT         
Sbjct: 13  FFEAAGRHQSFKLAAAELNVTPSAVSHGIVGLEEALGVELFVREPRGISLTATGADYLSY 72

Query: 65  ----------------------------XPTLASRWLLPRLQDFRTLWPDTNVTVDTSPR 96
                                        PT ASRWLLPRL  FR  WP  NVTVDTS R
Sbjct: 73  VSEAFSLIAIGTQRLPNHRANRPIALSCAPTFASRWLLPRLPHFRARWPKVNVTVDTSHR 132

Query: 97  QVNLPTDGFDFAIRMSRAPVADPSWRKLFGEQLVPVCSP 135
           QV  P DGFDFAIR+SRAPVA  +W +LFGEQLVPVCSP
Sbjct: 133 QVGFPVDGFDFAIRLSRAPVAGSAWTRLFGEQLVPVCSP 171