BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0409.p (400 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D4XE57.1 D4XE57_9BURK Low temperature requirement A protein LtrA 501 e-140 E5U6G5.1 E5U6G5_ALCXX Low temperature requirement protein LtrA 489 e-136 E3HWL7.1 E3HWL7_ACHXA Bacterial low temperature requirement A pr... 478 e-133 A6X0T8.1 A6X0T8_OCHA4 Low temperature requirement A 472 e-131 A8GAH5.1 A8GAH5_SERP5 Low temperature requirement A 469 e-130 >D4XE57.1 D4XE57_9BURK Low temperature requirement A protein LtrA Length = 394 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 251/375 (66%), Positives = 292/375 (77%), Gaps = 3/375 (0%) Query: 13 LLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQYT 72 LLR RDGHEARV++VELFFDL+YVFAVTQLSH LL +LT+ GAV LVLWFAVWL WQYT Sbjct: 9 LLRRRDGHEARVTYVELFFDLVYVFAVTQLSHSLLHDLTLMGAVHALVLWFAVWLGWQYT 68 Query: 73 SWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVLC 132 WVTNWFDP+ L +RI+LFA+MLVGL+ AA +P+AF GL+FAI YA IQVGRT+F++ Sbjct: 69 CWVTNWFDPDALAMRIMLFAVMLVGLVAAAVLPDAFGANGLIFAICYALIQVGRTVFIVL 128 Query: 133 CLGKDHALTPNFRRMFGWLFISAVFWIAGGL-SPEYRLALWIIAVACEYFSPMIGFALPG 191 LG HAL+ NFRRM GWL +SAV WIAGGL S + RLALWI AVACEY SPMIGF LPG Sbjct: 129 HLGPHHALSANFRRMLGWLCVSAVLWIAGGLASGDARLALWIAAVACEYVSPMIGFRLPG 188 Query: 192 LGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTX--K 249 +GRS T +WTIEGGH+AERCQLFVIVALGE LL+TGAT+ QW+ P ++A + Sbjct: 189 MGRSYTTDWTIEGGHIAERCQLFVIVALGETLLITGATLGDRGQWDTPTLIALLAAFLGT 248 Query: 250 EYLQQQYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQR 309 + Y TSSKDGS AI H+SDPGR+GA FHYVHVI++AGVIVSAV ELVI HPD R Sbjct: 249 AAMWWVYFDTSSKDGSHAIEHASDPGRMGARFHYVHVILIAGVIVSAVANELVIQHPDGR 308 Query: 310 IGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGGL 369 I +L L+ GPALYLLGN +YK VVY R PLSH+ GL+LLA LA YVTD LMVGGL Sbjct: 309 IATPALAALLCGPALYLLGNGIYKSVVYLRFPLSHVVGLILLAALAPVAYVTDNLMVGGL 368 Query: 370 AAAILILTAAWESCS 384 ++I+ A WES S Sbjct: 369 TTIVMIVVAVWESVS 383 >E5U6G5.1 E5U6G5_ALCXX Low temperature requirement protein LtrA Length = 391 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 258/384 (67%), Positives = 297/384 (77%), Gaps = 3/384 (0%) Query: 12 GLLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQY 71 LLR RDGHEARV+FVELFFDL+YVFAVTQLSH LL +LT+ GA+ TLVLWFAVWL WQY Sbjct: 8 NLLRHRDGHEARVTFVELFFDLVYVFAVTQLSHSLLHDLTLMGALHTLVLWFAVWLGWQY 67 Query: 72 TSWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVL 131 T WVTNWFDP+ L +R++LF +ML GL+ AA +P AF GL+FA+ Y IQVGRTLFV+ Sbjct: 68 TCWVTNWFDPDALPMRLMLFGVMLAGLVAAAVLPGAFGENGLIFAVCYVLIQVGRTLFVV 127 Query: 132 CCLGKDHALTPNFRRMFGWLFISAVFWIAGGL-SPEYRLALWIIAVACEYFSPMIGFALP 190 LG+ H L PNFRRM GWL ISAVFWIAGGL S + RLALWI+AVACEYFSPM GF LP Sbjct: 128 LHLGRSHPLAPNFRRMLGWLCISAVFWIAGGLASGDTRLALWIVAVACEYFSPMAGFWLP 187 Query: 191 GLGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTX-- 248 GLGRS TREWTIEGGHLAERCQLFVIVALGE LL+TGAT+ W+ P ++A + Sbjct: 188 GLGRSTTREWTIEGGHLAERCQLFVIVALGETLLITGATLGEHPHWDIPTLIALLAAFLG 247 Query: 249 KEYLQQQYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQ 308 + Y TSSKDGS+AI H +DPGR+GAYFHYVHVI++AGVIVSAV ELVI HPD Sbjct: 248 TAAMWWVYFDTSSKDGSEAIAHHADPGRVGAYFHYVHVILIAGVIVSAVANELVILHPDG 307 Query: 309 RIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGG 368 RI + L+ GPALYLLGN VYK VVY R PLSH+AGL LLA+LA +VTD LMVGG Sbjct: 308 RIVTAAAAALLGGPALYLLGNGVYKTVVYGRFPLSHVAGLALLAILAPIAFVTDNLMVGG 367 Query: 369 LAAAILILTAAWESCSRRKTALAY 392 L I++L A WES SRR+ A+ Sbjct: 368 LTTLIMMLVAGWESVSRRRMRPAH 391 >E3HWL7.1 E3HWL7_ACHXA Bacterial low temperature requirement A protein family protein Length = 397 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 251/379 (66%), Positives = 294/379 (77%), Gaps = 3/379 (0%) Query: 12 GLLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQY 71 LLR RDGHEARV++VELFFDL+YVFAVTQ+SH LL +LT+ GA+ LVLWFAVWL WQY Sbjct: 8 NLLRRRDGHEARVTYVELFFDLVYVFAVTQISHSLLHDLTLMGALHALVLWFAVWLGWQY 67 Query: 72 TSWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVL 131 T WVTNWFDP+ + +R++LFA+ML GL+ AA+P AF GLVFA++Y IQVGRTLF++ Sbjct: 68 TCWVTNWFDPDAVPMRVMLFAVMLAGLVSGAALPGAFGATGLVFAVSYVLIQVGRTLFIV 127 Query: 132 CCLGKDHALTPNFRRMFGWLFISAVFWIAGGLSPE-YRLALWIIAVACEYFSPMIGFALP 190 LG H L PNFRRM WL +SAV W+AGGLS + RLALW +AVACEY SPMIGF P Sbjct: 128 LHLGPAHPLAPNFRRMLAWLCVSAVLWVAGGLSQDGTRLALWALAVACEYLSPMIGFRFP 187 Query: 191 GLGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTX-- 248 GLGRS TREWTIEGGHLAERCQLFVIVALGE LL++GAT+A +W AP ++A + Sbjct: 188 GLGRSSTREWTIEGGHLAERCQLFVIVALGETLLISGATLADLERWNAPALIALLAAFLG 247 Query: 249 KEYLQQQYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQ 308 + Y TSS+DGS+AIVHS DPGRIGA+FHYVHVI++AGVIVSAV ELVI HPD Sbjct: 248 TAAMWWVYFDTSSRDGSEAIVHSDDPGRIGAWFHYVHVILIAGVIVSAVANELVILHPDG 307 Query: 309 RIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGG 368 RI + LI GPALYL GN +YK VVY R PLSH+ GLVLLA+LA +VTD LMVGG Sbjct: 308 RIAMPAAAALIGGPALYLAGNGIYKTVVYGRFPLSHVVGLVLLAVLAPVAFVTDNLMVGG 367 Query: 369 LAAAILILTAAWESCSRRK 387 L I+IL AAWES SRR+ Sbjct: 368 LTTLIMILVAAWESVSRRR 386 >A6X0T8.1 A6X0T8_OCHA4 Low temperature requirement A Length = 396 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 242/393 (61%), Positives = 298/393 (75%), Gaps = 12/393 (3%) Query: 1 MNTSSA--KKPLTGLLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVET 58 MN++SA PL LR RDGH ARV+F ELFFDL+YVFAVTQLSH LL NLT+ G VET Sbjct: 1 MNSASAVASHPL---LRQRDGHHARVTFEELFFDLVYVFAVTQLSHELLHNLTLTGVVET 57 Query: 59 LVLWFAVWLAWQYTSWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIA 118 L+LWFAVWL WQYT WVTNWF+PET QIR LLF +ML+GL+MA++IP AF +G +FA+A Sbjct: 58 LILWFAVWLGWQYTCWVTNWFNPETPQIRSLLFCVMLLGLVMASSIPGAFADKGWIFALA 117 Query: 119 YAAIQVGRTLFVLCCLGKDHALTPNFRRMFGWLFISAVFWIAGG-LSPEYRLALWIIAVA 177 Y AIQVG+T +++ LG+DH L N+RRM GWL ISAVFWIAG + E R+ LW+IAV Sbjct: 118 YVAIQVGKTAYIVFVLGQDHPLAANYRRMLGWLTISAVFWIAGCFVEHEARMVLWLIAVL 177 Query: 178 CEYFSPMIGFALPGLGRSDTREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWE 237 CEY SPM GFALPGLGRS T +WTIEGGHLAERCQLFVIVALGE +L TGAT+A+A W Sbjct: 178 CEYLSPMFGFALPGLGRSHTSDWTIEGGHLAERCQLFVIVALGETVLATGATLANAEVWN 237 Query: 238 APVMVAFVVTXKEYLQQQYLH--TSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVS 295 +M A + T L +L+ TSSKD +D I HS+DPGRIGAYFHYVH I+VAG+I + Sbjct: 238 LALMSALLATFLGTLAMWWLYFGTSSKDATDTITHSTDPGRIGAYFHYVHAILVAGIIAT 297 Query: 296 AVGAELVIAHPDQRIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLA 355 AVG +LV+AHP + +LVL+AGPA+YL+G+A+YKKVVY +P SH G +LALLA Sbjct: 298 AVGNDLVMAHPHDPLKTAYVLVLVAGPAIYLIGSAIYKKVVYGVIPTSHAFG--VLALLA 355 Query: 356 AF--GYVTDLLMVGGLAAAILILTAAWESCSRR 386 A GY+ DLL +G L I+++ + WE ++R Sbjct: 356 AIPVGYMADLLEMGILTTVIMLVVSVWEGRNKR 388 >A8GAH5.1 A8GAH5_SERP5 Low temperature requirement A Length = 393 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 239/386 (61%), Positives = 290/386 (75%), Gaps = 4/386 (1%) Query: 13 LLRVRDGHEARVSFVELFFDLIYVFAVTQLSHRLLENLTVAGAVETLVLWFAVWLAWQYT 72 LLRVRDGH A VSF EL FDLIYVFAVTQLSH LL +LT+ GA+ETL+LWFAVWLAWQYT Sbjct: 5 LLRVRDGHGASVSFSELLFDLIYVFAVTQLSHYLLHHLTLTGALETLLLWFAVWLAWQYT 64 Query: 73 SWVTNWFDPETLQIRILLFAIMLVGLLMAAAIPEAFDGRGLVFAIAYAAIQVGRTLFVLC 132 +WVTNWF+P+T IRILLFAIML+GL ++A+P+AF RGL FA+ Y AIQVGR+L VL Sbjct: 65 AWVTNWFNPDTRPIRILLFAIMLLGLFASSALPQAFGERGLTFALFYVAIQVGRSLVVLN 124 Query: 133 CLGKDHALTPNFRRMFGWLFISAVFWIAGGLSP-EYRLALWIIAVACEYFSPMIGFALPG 191 L H L NF+R+ GW+ ISA+FWI GGL+ +RL LW +AV CEY SPM GF LP Sbjct: 125 LLPAHHPLKQNFQRILGWMCISAIFWILGGLTEGNHRLLLWAVAVLCEYVSPMFGFRLPV 184 Query: 192 LGRSD-TREWTIEGGHLAERCQLFVIVALGEALLVTGATVAHATQWEAPVMVAFVVTXKE 250 LGRSD + EWTIEG HLAERCQLFVIVALGE +L+TG+T++ W APV++A +V Sbjct: 185 LGRSDSSSEWTIEGHHLAERCQLFVIVALGETILITGSTLSEMESWTAPVLIASLVAFLG 244 Query: 251 YLQQ--QYLHTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQ 308 L Y TSSK GS AI +++PG++GAYFHYVHV++V +IV AV ELVIAHPD Sbjct: 245 SLAMWWVYFDTSSKAGSHAISQAANPGQLGAYFHYVHVVLVGAIIVCAVANELVIAHPDG 304 Query: 309 RIGPTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGG 368 I + VL+ GPA+YLL NA+YK++VYRR PLSHL GL+ LA+LA Y+TDLLMV G Sbjct: 305 HINNVTAAVLLLGPAIYLLANALYKRLVYRRFPLSHLLGLIALAVLAPIAYLTDLLMVNG 364 Query: 369 LAAAILILTAAWESCSRRKTALAYQD 394 L I++ A WES SR K + A +D Sbjct: 365 LTTLIMVAVAVWESISRGKVSQANRD 390