BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0408.p         (149 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D4XE57.1 D4XE57_9BURK Low temperature requirement A protein LtrA      184   4e-45
E3HWL7.1 E3HWL7_ACHXA Bacterial low temperature requirement A pr...   178   2e-43
A8GAH5.1 A8GAH5_SERP5 Low temperature requirement A                   177   6e-43
D1RVQ9.1 D1RVQ9_SEROD Low temperature requirement A                   172   1e-41
E5U6G5.1 E5U6G5_ALCXX Low temperature requirement protein LtrA        167   4e-40

>D4XE57.1 D4XE57_9BURK Low temperature requirement A protein LtrA
          Length = 394

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 104/133 (78%)

Query: 1   MWWLYFDTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQRIG 60
           MWW+YFDTSSKDGS AI H+SDPGR+GA FHYVHVI++AGVIVSAV  ELVI HPD RI 
Sbjct: 251 MWWVYFDTSSKDGSHAIEHASDPGRMGARFHYVHVILIAGVIVSAVANELVIQHPDGRIA 310

Query: 61  PTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGGLAA 120
             +L  L+ GPALYLLGN +YK VVY R PLSH+ GL+LLA LA   YVTD LMVGGL  
Sbjct: 311 TPALAALLCGPALYLLGNGIYKSVVYLRFPLSHVVGLILLAALAPVAYVTDNLMVGGLTT 370

Query: 121 AILILTAAWESCS 133
            ++I+ A WES S
Sbjct: 371 IVMIVVAVWESVS 383


>E3HWL7.1 E3HWL7_ACHXA Bacterial low temperature requirement A protein family
           protein
          Length = 397

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 109/136 (80%)

Query: 1   MWWLYFDTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQRIG 60
           MWW+YFDTSS+DGS+AIVHS DPGRIGA+FHYVHVI++AGVIVSAV  ELVI HPD RI 
Sbjct: 251 MWWVYFDTSSRDGSEAIVHSDDPGRIGAWFHYVHVILIAGVIVSAVANELVILHPDGRIA 310

Query: 61  PTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGGLAA 120
             +   LI GPALYL GN +YK VVY R PLSH+ GLVLLA+LA   +VTD LMVGGL  
Sbjct: 311 MPAAAALIGGPALYLAGNGIYKTVVYGRFPLSHVVGLVLLAVLAPVAFVTDNLMVGGLTT 370

Query: 121 AILILTAAWESCSRRK 136
            I+IL AAWES SRR+
Sbjct: 371 LIMILVAAWESVSRRR 386


>A8GAH5.1 A8GAH5_SERP5 Low temperature requirement A
          Length = 393

 Score =  177 bits (448), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 85/143 (59%), Positives = 107/143 (74%)

Query: 1   MWWLYFDTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQRIG 60
           MWW+YFDTSSK GS AI  +++PG++GAYFHYVHV++V  +IV AV  ELVIAHPD  I 
Sbjct: 248 MWWVYFDTSSKAGSHAISQAANPGQLGAYFHYVHVVLVGAIIVCAVANELVIAHPDGHIN 307

Query: 61  PTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGGLAA 120
             +  VL+ GPA+YLL NA+YK++VYRR PLSHL GL+ LA+LA   Y+TDLLMV GL  
Sbjct: 308 NVTAAVLLLGPAIYLLANALYKRLVYRRFPLSHLLGLIALAVLAPIAYLTDLLMVNGLTT 367

Query: 121 AILILTAAWESCSRRKTALAYQD 143
            I++  A WES SR K + A +D
Sbjct: 368 LIMVAVAVWESISRGKVSQANRD 390


>D1RVQ9.1 D1RVQ9_SEROD Low temperature requirement A
          Length = 387

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 103/137 (75%)

Query: 1   MWWLYFDTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQRIG 60
           MWW+YFDTSSK GS AI  + +PG++GA FHYVHV++V  +IV AV  ELVIAHPD  IG
Sbjct: 248 MWWVYFDTSSKAGSHAISQAENPGQLGANFHYVHVVLVGAIIVCAVANELVIAHPDGPIG 307

Query: 61  PTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGGLAA 120
             +  VL+ GPA+YLL NA+YK++VYRR PLSHL GL+ LA+L    Y+TDLLMV GL  
Sbjct: 308 NVTAAVLLLGPAIYLLANALYKRLVYRRFPLSHLVGLIALAVLTPIAYLTDLLMVNGLTT 367

Query: 121 AILILTAAWESCSRRKT 137
            I+++ A WES SR +T
Sbjct: 368 LIMVVVAVWESISRGRT 384


>E5U6G5.1 E5U6G5_ALCXX Low temperature requirement protein LtrA
          Length = 391

 Score =  167 bits (424), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 108/136 (79%)

Query: 1   MWWLYFDTSSKDGSDAIVHSSDPGRIGAYFHYVHVIIVAGVIVSAVGAELVIAHPDQRIG 60
           MWW+YFDTSSKDGS+AI H +DPGR+GAYFHYVHVI++AGVIVSAV  ELVI HPD RI 
Sbjct: 251 MWWVYFDTSSKDGSEAIAHHADPGRVGAYFHYVHVILIAGVIVSAVANELVILHPDGRIV 310

Query: 61  PTSLLVLIAGPALYLLGNAVYKKVVYRRLPLSHLAGLVLLALLAAFGYVTDLLMVGGLAA 120
             +   L+ GPALYLLGN VYK VVY R PLSH+AGL LLA+LA   +VTD LMVGGL  
Sbjct: 311 TAAAAALLGGPALYLLGNGVYKTVVYGRFPLSHVAGLALLAILAPIAFVTDNLMVGGLTT 370

Query: 121 AILILTAAWESCSRRK 136
            I++L A WES SRR+
Sbjct: 371 LIMMLVAGWESVSRRR 386