BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0364.p (564 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITV9.1 D8ITV9_HERSS Two component sensor histidine kinase prot... 855 0.0 A4G1H9.1 A4G1H9_HERAR Putative two-component sensor kinase 745 0.0 A6SU99.1 A6SU99_JANMA Two component sensor histidine kinase tran... 742 0.0 F1VU88.1 F1VU88_9BURK Signal transduction histidine kinase invol... 722 0.0 C3XBJ2.1 C3XBJ2_OXAFO Two component sensor histidine kinase tran... 694 0.0 >D8ITV9.1 D8ITV9_HERSS Two component sensor histidine kinase protein EC=2.7.3.- Length = 760 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/562 (79%), Positives = 494/562 (87%), Gaps = 3/562 (0%) Query: 2 MRQARLSRGFSVVESDDSRPLNGESDADGNLRLHVVIAVPASSKAMGLQNDSRFLQILQP 61 MRQAR+SR FS VESDDSRP +G+SD+DGNLRLHVV+ VPA S+A+ LQ ++R+LQILQP Sbjct: 199 MRQARVSRAFSAVESDDSRPASGQSDSDGNLRLHVVVLVPAPSRALALQGETRYLQILQP 258 Query: 62 VPDYLATNAETLRLAYSEYQQRSVARSGLRKIYIVTLTLTLLLAIFGAIASAFLIASDLA 121 VPDYLA+NAETLRLAY+EYQQRSV+RSGLRKIY+VTLTLTLLLAIF AIASAFLIASDLA Sbjct: 259 VPDYLASNAETLRLAYNEYQQRSVSRSGLRKIYLVTLTLTLLLAIFAAIASAFLIASDLA 318 Query: 122 KPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNTMTRQLLEARTSVEKNRAELEN 181 KPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFN MTRQLLEARTSVEKNRAELEN Sbjct: 319 KPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNIMTRQLLEARTSVEKNRAELEN 378 Query: 182 AKAYLESVLANMSAGVMVLDSAFCIVSVNDSVRRILGYDFNGSTGTPLHTIDGQALFAEA 241 AKAYLESVLANMSAGVMVLD F I+S NDSVRRILG+DF+ GTPL TI+ QA FA+A Sbjct: 379 AKAYLESVLANMSAGVMVLDGQFNILSANDSVRRILGHDFSADIGTPLQTIEAQAPFAQA 438 Query: 242 IIKAFSEQRA-HLADSAEDGLHWQQQIELPHRSNSNSGSSNGDGAESSKDGSKTILLARG 300 +I+AFSEQ A H +DS DGLHWQ+Q EL + + S + G + D K LLARG Sbjct: 439 VIRAFSEQLAQHSSDSTPDGLHWQRQFELSRQPGAMLDSDDEQGGKPDHD--KLTLLARG 496 Query: 301 SHLPVQSGVGYVVVFDDISKVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERLQMRLA 360 SHLPV++GVGYVVVFDDIS VISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERLQ RL+ Sbjct: 497 SHLPVENGVGYVVVFDDISNVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERLQHRLS 556 Query: 361 DKLLPQDAAILDKSTTTIVNQVSAMKRMVDDFREYAKTPPAKPSALDLNALTEEILHLYL 420 DKL+P DAAILDK TTTIVNQV+AMKRMVDDFR+YA+TPPAKP ALDLNAL EEIL+LYL Sbjct: 557 DKLMPADAAILDKGTTTIVNQVTAMKRMVDDFRDYARTPPAKPVALDLNALIEEILNLYL 616 Query: 421 AGDGRDTIHARLAPDLPKVMGDATQLRQVIHNLLQNAQDAVAENGGITPHIEVVTELVKY 480 AGDGRD IHARLAP + KVMGDATQLRQVIHNLLQNAQDAVA+ G + P I+V+TE + Sbjct: 617 AGDGRDAIHARLAPSMAKVMGDATQLRQVIHNLLQNAQDAVADEGEVAPRIDVLTEQIDI 676 Query: 481 QGSNGVARSAVRLSITDNGPGFSQKILASAFEPYVTSKPKGTGLGLAMVKKIVDEHGGRI 540 G++G + AVRLSI DNGPGFS KILA AFEPYVTSK KGTGLGLAMVKKIV+EHGGRI Sbjct: 677 AGADGQRQPAVRLSIMDNGPGFSAKILARAFEPYVTSKSKGTGLGLAMVKKIVEEHGGRI 736 Query: 541 DIQNRSDTRGAKILILLLKLAS 562 DIQNR+D RGAKI+ILL+KLAS Sbjct: 737 DIQNRTDGRGAKIVILLVKLAS 758 >A4G1H9.1 A4G1H9_HERAR Putative two-component sensor kinase Length = 767 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/582 (68%), Positives = 454/582 (78%), Gaps = 34/582 (5%) Query: 1 MMRQARLSRGFSVVESD----DSRPLNGESDADGN------------LRLHVVIAVPASS 44 M+RQARL+R ++V+E + D+ P S+A N LRL VVIA+P SS Sbjct: 200 MLRQARLTRAYAVIEGNTDFQDNSP--SASNAKTNTITASAANPANSLRLRVVIAIPNSS 257 Query: 45 KAMGLQNDSRFLQILQPVPDYLATNAETLRLAYSEYQQRSVARSGLRKIYIVTLTLTLLL 104 K + LQ++SR+LQ+LQPVP+ LA NAE LR+AYSEYQ+R +AR+GLRKIYIVTLTLTLLL Sbjct: 258 KELSLQSESRYLQLLQPVPEQLAANAEALRVAYSEYQERYLARTGLRKIYIVTLTLTLLL 317 Query: 105 AIFGAIASAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNTMTRQ 164 AIFGAIA AFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIV+TSDELGTLTQSFN MTRQ Sbjct: 318 AIFGAIAGAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVTTSDELGTLTQSFNMMTRQ 377 Query: 165 LLEARTSVEKNRAELENAKAYLESVLANMSAGVMVLDSAFCIVSVNDSVRRILGYDFNGS 224 L +AR SVEKNRAELENAK YLESVLANMSAGVMVLD F +V+ N+SV RIL +DF Sbjct: 378 LSDARASVEKNRAELENAKGYLESVLANMSAGVMVLDRNFKLVTCNESVERILQHDFAQH 437 Query: 225 TGTPLHTIDGQALFAEAIIKAFSEQRAHLADSAED--GLHWQQQIELPHRSNSNSGSSNG 282 G PL IDG + FA+ I ++FSEQ A A D LHWQ QI++P R Sbjct: 438 IGKPLQEIDGLSAFAQVITQSFSEQSAQSAAGGADTGNLHWQHQIDVPRRMG-------- 489 Query: 283 DGAESSKDGSKTILLARGSHLPVQSGVGYVVVFDDISKVISAQRSIAWGEVARRLAHEIK 342 GAE+ D S LLARGS LP GYVVVFDDIS VISAQRSIAWGEVARRLAHEIK Sbjct: 490 -GAEAENDIS---LLARGSRLPAARDSGYVVVFDDISDVISAQRSIAWGEVARRLAHEIK 545 Query: 343 NPLTPIQLSAERLQMRLADKLLPQDAAILDKSTTTIVNQVSAMKRMVDDFREYAKTPPAK 402 NPLTPIQLSAERLQM+L KL QDA IL++ST TIVNQVSAM+RMVDDFR+YAKTPPA Sbjct: 546 NPLTPIQLSAERLQMKLEGKLNEQDARILERSTATIVNQVSAMQRMVDDFRDYAKTPPAV 605 Query: 403 PSALDLNALTEEILHLYLAGDGRDTIHARLAPDLPKVMGDATQLRQVIHNLLQNAQDAVA 462 S LDLNAL EEILHLY GD RD IHARLA LP VMGDATQLRQVIHNLLQNAQDAVA Sbjct: 606 LSPLDLNALIEEILHLYQTGDERDIIHARLAEGLPLVMGDATQLRQVIHNLLQNAQDAVA 665 Query: 463 EN--GGITPHIEVVTELVKYQGSNGVARSAVRLSITDNGPGFSQKILASAFEPYVTSKPK 520 + T I+++TE + Y+ S+G +AV+LSITD GPGFS KILA AFEPY+TSKP+ Sbjct: 666 DQIRQESTARIDIITEEIHYRSSDGTVSNAVQLSITDTGPGFSPKILAHAFEPYITSKPR 725 Query: 521 GTGLGLAMVKKIVDEHGGRIDIQNRSDTRGAKILILLLKLAS 562 GTGLGLAMVKKI++EHGGRIDI+NR+ T GAK+ ILLLKL+S Sbjct: 726 GTGLGLAMVKKIIEEHGGRIDIKNRTSTNGAKVAILLLKLSS 767 >A6SU99.1 A6SU99_JANMA Two component sensor histidine kinase transcription regulator protein Length = 763 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/576 (67%), Positives = 455/576 (78%), Gaps = 25/576 (4%) Query: 1 MMRQARLSRGFSVVE-----SDDSRPLNGES----DADGNLRLHVVIAVPASSKAMGLQN 51 M+RQAR++R ++ +E DDS+ + + + ++ L VV+ +P SSKA+ LQ Sbjct: 200 MLRQARVARSYATIEGNNEFQDDSKKSSTNTTPVTNTANSMYLRVVVEIPTSSKALLLQT 259 Query: 52 DSRFLQILQPVPDYLATNAETLRLAYSEYQQRSVARSGLRKIYIVTLTLTLLLAIFGAIA 111 DSR+LQ+ QPVP+ LATNAE LR+AYSEYQ+R +AR+GLRKIYIVTLTLTLLLAIFGAIA Sbjct: 260 DSRYLQLRQPVPEQLATNAEALRVAYSEYQERYLARTGLRKIYIVTLTLTLLLAIFGAIA 319 Query: 112 SAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNTMTRQLLEARTS 171 AFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIV+TSDELGTLTQSFNTMTRQL +AR S Sbjct: 320 GAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVATSDELGTLTQSFNTMTRQLFDARAS 379 Query: 172 VEKNRAELENAKAYLESVLANMSAGVMVLDSAFCIVSVNDSVRRILGYDFNGSTGTPLHT 231 VEKNR ELENAK YLESVLANMSAGVMVLD F +V+ N+SV RIL +DF G PL Sbjct: 380 VEKNRFELENAKGYLESVLANMSAGVMVLDRNFKLVTCNESVERILQHDFAQHIGKPLKD 439 Query: 232 IDGQALFAEAIIKAFSEQRAHLA--DSAEDGLHWQQQIELPHRSNSNSGSSNGDGAESSK 289 IDG + FA+ I ++FSEQ A A + ++ LHWQ QI++P R G E+ Sbjct: 440 IDGLSTFAQVITQSFSEQSAQSAAGRAGKESLHWQHQIDVPRRMG---------GPETEN 490 Query: 290 DGSKTILLARGSHLPVQSGVGYVVVFDDISKVISAQRSIAWGEVARRLAHEIKNPLTPIQ 349 D S LLARGS LP YVVVFDDIS VISAQRSIAWGEVARRLAHEIKNPLTPIQ Sbjct: 491 DIS---LLARGSRLPGAREGSYVVVFDDISDVISAQRSIAWGEVARRLAHEIKNPLTPIQ 547 Query: 350 LSAERLQMRLADKLLPQDAAILDKSTTTIVNQVSAMKRMVDDFREYAKTPPAKPSALDLN 409 LSAERL M+L KL DA +L++ST TIVNQV+AMKRMVDDFR+YAKTPPA S+LDLN Sbjct: 548 LSAERLHMKLEGKLNEADAKVLERSTETIVNQVTAMKRMVDDFRDYAKTPPAVLSSLDLN 607 Query: 410 ALTEEILHLYLAGDGRDTIHARLAPDLPKVMGDATQLRQVIHNLLQNAQDAVAENG--GI 467 AL EEILHLYL+GDGRD IHA LA DLP +MGD TQLRQVIHNLLQNAQDAVA+ G Sbjct: 608 ALIEEILHLYLSGDGRDIIHATLAQDLPLIMGDPTQLRQVIHNLLQNAQDAVADRGEQAA 667 Query: 468 TPHIEVVTELVKYQGSNGVARSAVRLSITDNGPGFSQKILASAFEPYVTSKPKGTGLGLA 527 I+++TE + Y+ S+G +AV+L+ITDNGPGF+ KILA AFEPY+TSKP+GTGLGLA Sbjct: 668 PARIDIITEEIHYRSSDGAVSNAVQLTITDNGPGFTPKILAHAFEPYITSKPRGTGLGLA 727 Query: 528 MVKKIVDEHGGRIDIQNRSDTRGAKILILLLKLASD 563 MVKKI++EHGGRIDIQNRSDT GAK+ ILLLKL+S+ Sbjct: 728 MVKKIIEEHGGRIDIQNRSDTNGAKVAILLLKLSSE 763 >F1VU88.1 F1VU88_9BURK Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation Length = 783 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/574 (68%), Positives = 449/574 (78%), Gaps = 25/574 (4%) Query: 1 MMRQARLSRGFSVVE---------SDDSRPLNGESDADGNLRLHVVIAVPASSKAMGLQN 51 M+RQARLSRG++ +E + +R +DA NLRL VV+ +P+ A+ LQ+ Sbjct: 200 MLRQARLSRGYTGMEGQPEPREIDTTAARTTPPAADAINNLRLRVVVEIPSGRNALSLQS 259 Query: 52 DSRFLQILQPVPDYLATNAETLRLAYSEYQQRSVARSGLRKIYIVTLTLTLLLAIFGAIA 111 + RFLQ++QPVP LATNAE LR AYSEYQ+RS++RSGLRKIYIVTLTLTLLLAIF AI Sbjct: 260 EGRFLQLIQPVPSSLATNAEALRAAYSEYQERSLSRSGLRKIYIVTLTLTLLLAIFAAIV 319 Query: 112 SAFLIASDLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNTMTRQLLEARTS 171 SAFLIASDLA+PLLLLAEGTKAVAEG+LSPRPIV+TSDELGTLTQSFNTMTRQL +AR S Sbjct: 320 SAFLIASDLAEPLLLLAEGTKAVAEGDLSPRPIVATSDELGTLTQSFNTMTRQLFDARAS 379 Query: 172 VEKNRAELENAKAYLESVLANMSAGVMVLDSAFCIVSVNDSVRRILGYDFNGSTGTPLHT 231 VE NRAELENAKAYLESVLANMSAGVMVLD FC+V+ N+SV RIL ++ PL Sbjct: 380 VEINRAELENAKAYLESVLANMSAGVMVLDDTFCLVTCNESVERILQHEVERYLNQPLAM 439 Query: 232 IDGQALFAEAIIKAFSEQRAHL--ADSAEDGLHWQQQIELPHRSNSNSGSSNGDGAESSK 289 I G FA+A+ AFS Q A AD+ GLHWQQQIE+P SG +N D Sbjct: 440 IAGLEPFADAVRNAFSTQSAQSAGADNGNAGLHWQQQIEVPR----TSGDANRD------ 489 Query: 290 DGSKTILLARGSHLPVQSGVGYVVVFDDISKVISAQRSIAWGEVARRLAHEIKNPLTPIQ 349 LLARGS LPV G GYVVVFD+IS+VISAQRSIAWGEVARRLAHEIKNPLTPIQ Sbjct: 490 --DDITLLARGSRLPVAGGSGYVVVFDNISEVISAQRSIAWGEVARRLAHEIKNPLTPIQ 547 Query: 350 LSAERLQMRLADKLLPQDAAILDKSTTTIVNQVSAMKRMVDDFREYAKTPPAKPSALDLN 409 LSAERLQM+L DKLLPQDAA+L+KST TIVNQV+AMKRMVDDFR+YA+TPPA S L+LN Sbjct: 548 LSAERLQMKLEDKLLPQDAAMLNKSTATIVNQVTAMKRMVDDFRDYARTPPAVLSPLNLN 607 Query: 410 ALTEEILHLYLAGDGRDTIHARLAPDLPKVMGDATQLRQVIHNLLQNAQDAVAEN--GGI 467 AL EE+LHLY GD R I+A LAP LP VMGDATQLRQVIHNLLQNAQDAV + Sbjct: 608 ALVEEVLHLYTGGDERAVINALLAPGLPMVMGDATQLRQVIHNLLQNAQDAVVDRPADSA 667 Query: 468 TPHIEVVTELVKYQGSNGVARSAVRLSITDNGPGFSQKILASAFEPYVTSKPKGTGLGLA 527 I+V+TE+V YQ +NG AVR +I+DNGPGFS KIL AFEPYVTSKP+GTGLGLA Sbjct: 668 AACIDVLTEVVNYQSANGKTCQAVRFAISDNGPGFSAKILKRAFEPYVTSKPRGTGLGLA 727 Query: 528 MVKKIVDEHGGRIDIQNRSDTRGAKILILLLKLA 561 MVKKIVDEHGGRIDI NR ++ GAK+LILLLKLA Sbjct: 728 MVKKIVDEHGGRIDILNRIESNGAKVLILLLKLA 761 >C3XBJ2.1 C3XBJ2_OXAFO Two component sensor histidine kinase transcription regulator protein Length = 775 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/568 (63%), Positives = 428/568 (75%), Gaps = 10/568 (1%) Query: 1 MMRQARLSRGFSVVES--DDSRPLNGESDADGNLRLHVVIAVPASSKAMGLQNDSRFLQI 58 M+RQ R++ +S +E DD N E+ D +L + V+ +P A+ L+ND FLQ+ Sbjct: 200 MLRQVRMTSHYSAIEGEVDDPSGENNENTEDTHLLIRVITLIPDKHIAISLKNDPYFLQL 259 Query: 59 LQPVPDYLATNAETLRLAYSEYQQRSVARSGLRKIYIVTLTLTLLLAIFGAIASAFLIAS 118 Q +PD +A NAE LR+AYSEYQ RS++RSGLRKIYIVTL+LTLLLAIFGAIASAF IAS Sbjct: 260 TQKMPDNVANNAEALRVAYSEYQVRSLSRSGLRKIYIVTLSLTLLLAIFGAIASAFQIAS 319 Query: 119 DLAKPLLLLAEGTKAVAEGNLSPRPIVSTSDELGTLTQSFNTMTRQLLEARTSVEKNRAE 178 +LAKPLLLLA+GTKAVAEGNLSPRPIVS SDELG+LTQSFN MTRQL EAR E+NRA+ Sbjct: 320 NLAKPLLLLAQGTKAVAEGNLSPRPIVSGSDELGSLTQSFNAMTRQLAEARALAEQNRAD 379 Query: 179 LENAKAYLESVLANMSAGVMVLDSAFCIVSVNDSVRRILGYDFNGSTGTPLHTIDGQALF 238 LE AKAYLESVLANMSAGV+VLD F ++ ND V R+L +D G L ++G F Sbjct: 380 LEAAKAYLESVLANMSAGVIVLDHNFRLIGCNDVVSRVLRHDLTPYVGKELSDVEGLETF 439 Query: 239 AEAIIKAFSEQRAHLADSAE-DGLHWQQQIELPHRSNSNSGSSNGDGAESSKDGSKTILL 297 + A+ KAFSE A A SA LHWQ+QIE+P + +SG G SSK+ + LL Sbjct: 440 STALTKAFSEFAAQTAGSANPQNLHWQKQIEIPRDTTEDSGHDTG----SSKNENVITLL 495 Query: 298 ARGSHLPVQSGVGYVVVFDDISKVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERLQM 357 ARGS+ V + Y+VVFDDI+ VIS QRSIAWGEVARRLAHEIKNPLTPIQLSAERLQM Sbjct: 496 ARGSYHSVNNENRYIVVFDDITDVISGQRSIAWGEVARRLAHEIKNPLTPIQLSAERLQM 555 Query: 358 RLADKLLPQDAAILDKSTTTIVNQVSAMKRMVDDFREYAKTPPAKPSALDLNALTEEILH 417 +L DKL D+AIL KST TIVNQV+AMK+MVDDFR +AKTPPA L+LNAL E+I+H Sbjct: 556 KLHDKLDQADSAILQKSTDTIVNQVTAMKQMVDDFRNFAKTPPALLKPLNLNALVEDIVH 615 Query: 418 LYLAGDGRDTIHARLAPDLPKVMGDATQLRQVIHNLLQNAQDAVAE---NGGITPHIEVV 474 LY D D IH RL DLP++MGD TQLRQVIHNLLQNAQDAV+E G P IE++ Sbjct: 616 LYSGNDSHDIIHTRLEQDLPEIMGDETQLRQVIHNLLQNAQDAVSEVENTGEYVPSIELM 675 Query: 475 TELVKYQGSNGVARSAVRLSITDNGPGFSQKILASAFEPYVTSKPKGTGLGLAMVKKIVD 534 TE V YQ ++ AVRLS+ DNGPGF++KIL+ FEPY+T+K +GTGLG+AMVKKIVD Sbjct: 676 TEKVHYQDASNQICIAVRLSVMDNGPGFAEKILSRIFEPYITTKERGTGLGMAMVKKIVD 735 Query: 535 EHGGRIDIQNRSDTRGAKILILLLKLAS 562 EHGGRID+ NR D+ GAK+ ILLL+LAS Sbjct: 736 EHGGRIDVHNRKDSNGAKVSILLLQLAS 763