BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0363.p         (198 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITV9.1 D8ITV9_HERSS Two component sensor histidine kinase prot...   233   9e-60
A6SU99.1 A6SU99_JANMA Two component sensor histidine kinase tran...   209   1e-52
A4G1H9.1 A4G1H9_HERAR Putative two-component sensor kinase            208   3e-52
F1VU88.1 F1VU88_9BURK Signal transduction histidine kinase invol...   202   2e-50
C3XBJ2.1 C3XBJ2_OXAFO Two component sensor histidine kinase tran...   202   2e-50

>D8ITV9.1 D8ITV9_HERSS Two component sensor histidine kinase protein
           EC=2.7.3.-
          Length = 760

 Score =  233 bits (595), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 135/142 (95%)

Query: 1   MTRTLRYLLVVGGGVISILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLT 60
           M+RTLRYLLVVGGGVISILLFLLASASENSALF+QHYPWLL LN LAAI+LL LV+LLL 
Sbjct: 1   MSRTLRYLLVVGGGVISILLFLLASASENSALFEQHYPWLLFLNGLAAISLLGLVLLLLG 60

Query: 61  RLYKRYRRGKFGSKLLARLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALES 120
           RLYKRYRRGKFGS+LLARLV++FAL+GILPGAVIYL+SVQFVSRSIESWFDVRMEAALES
Sbjct: 61  RLYKRYRRGKFGSRLLARLVLMFALVGILPGAVIYLMSVQFVSRSIESWFDVRMEAALES 120

Query: 121 GLNLGRNALDSSLTDLASRGRA 142
           GLNLGRNALDSSL+DL SR R 
Sbjct: 121 GLNLGRNALDSSLSDLVSRARG 142


>A6SU99.1 A6SU99_JANMA Two component sensor histidine kinase transcription
           regulator protein
          Length = 763

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/141 (81%), Positives = 128/141 (90%)

Query: 1   MTRTLRYLLVVGGGVISILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLT 60
           MTR LRYLLVVGG V+SILLFLLASASENS LF+Q+YPWLL LNA+ A ALLLLV LLL 
Sbjct: 1   MTRLLRYLLVVGGAVVSILLFLLASASENSNLFEQNYPWLLILNAVVAGALLLLVTLLLV 60

Query: 61  RLYKRYRRGKFGSKLLARLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALES 120
           RLYKRY+RGKFGS+L+ARLV+LFA+IGILPGAVIY VSVQFVSRSIESWFDVR+E+ALES
Sbjct: 61  RLYKRYKRGKFGSRLMARLVLLFAVIGILPGAVIYTVSVQFVSRSIESWFDVRVESALES 120

Query: 121 GLNLGRNALDSSLTDLASRGR 141
           GLNLGR ALDSSL DL ++ R
Sbjct: 121 GLNLGRAALDSSLNDLQTKAR 141


>A4G1H9.1 A4G1H9_HERAR Putative two-component sensor kinase
          Length = 767

 Score =  208 bits (530), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 128/142 (90%)

Query: 1   MTRTLRYLLVVGGGVISILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLT 60
           MTR LRYLLVVGG VISILLFLLASASENS LF+++YPWLL LNA+ A ALL LV LLL 
Sbjct: 1   MTRLLRYLLVVGGAVISILLFLLASASENSNLFERNYPWLLILNAVVAAALLGLVTLLLI 60

Query: 61  RLYKRYRRGKFGSKLLARLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALES 120
           RLYKRY+RGKFGSKL+ARLV+LFA+IGILPGAVIY VSVQFVSRSIESWFDVR+E+ALES
Sbjct: 61  RLYKRYKRGKFGSKLMARLVLLFAMIGILPGAVIYTVSVQFVSRSIESWFDVRVESALES 120

Query: 121 GLNLGRNALDSSLTDLASRGRA 142
           GLNLGR+ALDSSL +L  + R+
Sbjct: 121 GLNLGRSALDSSLDELRIKARS 142


>F1VU88.1 F1VU88_9BURK Signal transduction histidine kinase involved in
           nitrogen fixation and metabolism regulation
          Length = 783

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/141 (76%), Positives = 123/141 (87%)

Query: 1   MTRTLRYLLVVGGGVISILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLT 60
           M R LRY LVVGG +++ILLFLLASAS+NSA FDQHYPWLLGLN L  +ALL LV LLL 
Sbjct: 1   MQRALRYALVVGGAIVAILLFLLASASDNSASFDQHYPWLLGLNVLVTVALLALVTLLLA 60

Query: 61  RLYKRYRRGKFGSKLLARLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALES 120
           RLY RY+RG FGS+L+ARLV+LFA+IGILPG VIY VSVQFVSRSIESWFDVR+EAALES
Sbjct: 61  RLYARYKRGMFGSRLMARLVLLFAVIGILPGLVIYTVSVQFVSRSIESWFDVRVEAALES 120

Query: 121 GLNLGRNALDSSLTDLASRGR 141
           GLNLGR ALDSSL+DL+++  
Sbjct: 121 GLNLGRAALDSSLSDLSTKAH 141


>C3XBJ2.1 C3XBJ2_OXAFO Two component sensor histidine kinase transcription
           regulator protein
          Length = 775

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/136 (70%), Positives = 119/136 (87%)

Query: 1   MTRTLRYLLVVGGGVISILLFLLASASENSALFDQHYPWLLGLNALAAIALLLLVILLLT 60
           MTR LRYL +VGG ++SILLFLLASASEN+  FD++Y WL+G+N L A ALL+LV+ +L 
Sbjct: 1   MTRALRYLWIVGGAMMSILLFLLASASENTDFFDKNYSWLVGMNILVAAALLILVVWMLI 60

Query: 61  RLYKRYRRGKFGSKLLARLVMLFALIGILPGAVIYLVSVQFVSRSIESWFDVRMEAALES 120
           RLYKRY+RGKFGSKL+ +LV+LFAL+GILPGAVIY+VSVQFVSRSIESWFDVR+E+AL+S
Sbjct: 61  RLYKRYKRGKFGSKLMTKLVVLFALMGILPGAVIYVVSVQFVSRSIESWFDVRVESALDS 120

Query: 121 GLNLGRNALDSSLTDL 136
           G+ LG+  L+SS  DL
Sbjct: 121 GVKLGQAILESSREDL 136