BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0308.p         (86 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4G9S9.1 A4G9S9_HERAR 30S ribosomal protein S17                       162   1e-38
F1VY53.1 F1VY53_9BURK SSU ribosomal protein S17p (S11e)               161   4e-38
A6T3J5.1 A6T3J5_JANMA 30S ribosomal protein S17                       160   5e-38
C3X6I0.1 C3X6I0_OXAFO 30S ribosomal protein S17                       144   3e-33
D8IUT0.1 D8IUT0_HERSS 30S ribosomal protein S17                       143   7e-33

>A4G9S9.1 A4G9S9_HERAR 30S ribosomal protein S17
          Length = 90

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/86 (91%), Positives = 83/86 (96%)

Query: 1  VKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTV 60
          VKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKII+R+NKYHAH+E NQAK GDTV
Sbjct: 5  VKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIMRSNKYHAHNEGNQAKAGDTV 64

Query: 61 EIQEGRPISKTKAWSVTRVVQVAQIV 86
          EIQEGRPISKTKAW+VTRVVQ AQIV
Sbjct: 65 EIQEGRPISKTKAWTVTRVVQAAQIV 90


>F1VY53.1 F1VY53_9BURK SSU ribosomal protein S17p (S11e)
          Length = 91

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/85 (92%), Positives = 82/85 (96%)

Query: 2  KQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTVE 61
          K ALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKII+R+NKYHAHDEANQAKTGDTVE
Sbjct: 7  KVALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIMRSNKYHAHDEANQAKTGDTVE 66

Query: 62 IQEGRPISKTKAWSVTRVVQVAQIV 86
          IQEGRPISKTKAW+VTRVVQ  QIV
Sbjct: 67 IQEGRPISKTKAWTVTRVVQAVQIV 91


>A6T3J5.1 A6T3J5_JANMA 30S ribosomal protein S17
          Length = 90

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 83/86 (96%)

Query: 1  VKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTV 60
          VKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKII+R++KYHAH+E NQAK GDTV
Sbjct: 5  VKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIMRSSKYHAHNEGNQAKAGDTV 64

Query: 61 EIQEGRPISKTKAWSVTRVVQVAQIV 86
          EIQEGRPISKTKAW+VTRVVQ AQIV
Sbjct: 65 EIQEGRPISKTKAWTVTRVVQAAQIV 90


>C3X6I0.1 C3X6I0_OXAFO 30S ribosomal protein S17
          Length = 90

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 77/85 (90%)

Query: 2  KQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTVE 61
          K ALKRTLIGKVVSDKMDKTV+VLIER VKHPLYGKI+ R+ KY AHDEANQAK GDTVE
Sbjct: 6  KSALKRTLIGKVVSDKMDKTVSVLIERRVKHPLYGKIVRRSKKYLAHDEANQAKIGDTVE 65

Query: 62 IQEGRPISKTKAWSVTRVVQVAQIV 86
          IQEGRPISK K+W +T+V+QVAQIV
Sbjct: 66 IQEGRPISKNKSWVLTKVIQVAQIV 90


>D8IUT0.1 D8IUT0_HERSS 30S ribosomal protein S17
          Length = 90

 Score =  143 bits (361), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 75/86 (87%)

Query: 1  VKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDEANQAKTGDTV 60
          VKQALKRTLIGKVVSDKMDKTVTV IER +KHPLYGKII RT KYHAHDE N AK GD V
Sbjct: 5  VKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKAGDVV 64

Query: 61 EIQEGRPISKTKAWSVTRVVQVAQIV 86
          EI E RPISKTK+W+VTRVVQ AQIV
Sbjct: 65 EITESRPISKTKSWTVTRVVQEAQIV 90