BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0306.p         (104 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IUT2.1 D8IUT2_HERSS 50S ribosomal protein L24                       181   3e-44
A6T3J3.1 RL24_JANMA 50S ribosomal protein L24                         175   2e-42
A4G9S7.1 RL24_HERAR 50S ribosomal protein L24                         174   4e-42
F1VY51.1 F1VY51_9BURK LSU ribosomal protein L24p (L26e)               167   5e-40
C3X6I2.1 C3X6I2_OXAFO 50S ribosomal protein L24                       157   7e-37

>D8IUT2.1 D8IUT2_HERSS 50S ribosomal protein L24
          Length = 104

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 96/104 (92%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRKNDEVIVLTGKDKGKRGVVT RV  DYVVV+G+NVAKKAT+PNPMTGATGGIVDK
Sbjct: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADRV YK VDGKKVRAYKS+GEVVKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104


>A6T3J3.1 RL24_JANMA 50S ribosomal protein L24
          Length = 104

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 95/104 (91%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV +RV A+YVVV+G+NVAKKATKPNPMTGATGGIVDK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVQRRVDANYVVVEGVNVAKKATKPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADR G+K VDGKKVR YKSSGE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRAGFKDVDGKKVRVYKSSGEAVKV 104


>A4G9S7.1 RL24_HERAR 50S ribosomal protein L24
          Length = 104

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 95/104 (91%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV +RV A+Y+VV+G+NVAKKATKPNPMTGATGGIVDK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVQRRVDANYLVVEGVNVAKKATKPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADR G+K VDGKKVR YKSSGE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRAGFKDVDGKKVRVYKSSGEAVKV 104


>F1VY51.1 F1VY51_9BURK LSU ribosomal protein L24p (L26e)
          Length = 104

 Score =  167 bits (423), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KI+KNDEVIVL GKDKGKRG + +RV AD+V+VDGINVAKKATKPNPMTG TGGIVDK
Sbjct: 1   MDKIKKNDEVIVLAGKDKGKRGTILKRVDADHVLVDGINVAKKATKPNPMTGTTGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADRVG+K+VDG  VR +KSSGE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVGFKTVDGGLVRIFKSSGEAVKV 104


>C3X6I2.1 C3X6I2_OXAFO 50S ribosomal protein L24
          Length = 104

 Score =  157 bits (396), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 87/102 (85%), Gaps = 1/102 (0%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRK DEVIVL GKDKGKRG V Q+   D VVV G+NVAKK TKPNPMTGATGGIVDK
Sbjct: 1   MNKIRKGDEVIVLVGKDKGKRGTV-QQCMEDRVVVGGVNVAKKTTKPNPMTGATGGIVDK 59

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVV 102
           LMPIHVSN+ALFNA  GKADRVG+K VDGKKVR +KS+GEVV
Sbjct: 60  LMPIHVSNVALFNAKTGKADRVGFKEVDGKKVRVFKSNGEVV 101