BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0303.p         (131 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T3J0.1 RS8_JANMA 30S ribosomal protein S8                           254   2e-66
A4G9S4.1 RS8_HERAR 30S ribosomal protein S8                           252   1e-65
D8IUT5.1 D8IUT5_HERSS 30S ribosomal protein S8                        245   1e-63
A2WDE7.1 A2WDE7_9BURK 30S ribosomal protein S8                        230   5e-59
B9CH37.1 B9CH37_9BURK 30S ribosomal protein S8                        230   6e-59

>A6T3J0.1 RS8_JANMA 30S ribosomal protein S8
          Length = 131

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/131 (96%), Positives = 129/131 (98%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQVVQKT+VAMPSSKVKIAIANVLKDEGYIEDFAV EA GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVQKTSVAMPSSKVKIAIANVLKDEGYIEDFAVTEAAGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLRIYKGKD+IPNVMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>A4G9S4.1 RS8_HERAR 30S ribosomal protein S8
          Length = 131

 Score =  252 bits (643), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/131 (94%), Positives = 129/131 (98%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQVVQKT+VAMPSSKVKIAIANVLKDEGYIED+AV EA GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVQKTSVAMPSSKVKIAIANVLKDEGYIEDYAVTEAAGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLR+YKGKD+IPNVMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRVYKGKDDIPNVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>D8IUT5.1 D8IUT5_HERSS 30S ribosomal protein S8
          Length = 131

 Score =  245 bits (626), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/131 (93%), Positives = 125/131 (95%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQ V KTTV MPSSKVK+AIANVLKDEGYIEDFAV  A GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLRIYKGKD+IPNVMNGLGVAIVSTPRGVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>A2WDE7.1 A2WDE7_9BURK 30S ribosomal protein S8
          Length = 131

 Score =  230 bits (587), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 122/131 (93%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQ+V+K +VAMPSSKVK+AIA VLKDEGYI+DFAV   G KAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQMVEKVSVAMPSSKVKVAIAQVLKDEGYIDDFAVKSEGAKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
            I LKYYAGRPVIERLERVS+PGLR+Y+G++EIP VMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  NIALKYYAGRPVIERLERVSKPGLRVYRGRNEIPQVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>B9CH37.1 B9CH37_9BURK 30S ribosomal protein S8
          Length = 131

 Score =  230 bits (586), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 122/131 (93%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQ+V+K +VAMPSSKVK+AIA VLKDEGYI+DFAV   G KAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQMVEKVSVAMPSSKVKVAIAQVLKDEGYIDDFAVKTEGAKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
            I LKYYAGRPVIERLERVS+PGLR+Y+G++EIP VMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  NIALKYYAGRPVIERLERVSKPGLRVYRGRNEIPQVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131