BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0292.p         (334 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VZY4.1 F1VZY4_9BURK DNA-directed RNA polymerase alpha subunit       625   e-177
D8IUU7.1 D8IUU7_HERSS DNA-directed RNA polymerase subunit alpha ...   624   e-177
A2RQ11.1 A2RQ11_HERSE DNA-directed RNA polymerase subunit alpha ...   624   e-177
A4G9R3.1 RPOA_HERAR DNA-directed RNA polymerase subunit alpha EC...   619   e-175
A6T3H8.1 RPOA_JANMA DNA-directed RNA polymerase subunit alpha EC...   618   e-175

>F1VZY4.1 F1VZY4_9BURK DNA-directed RNA polymerase alpha subunit
          Length = 325

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 314/334 (94%), Positives = 320/334 (95%), Gaps = 9/334 (2%)

Query: 1   MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60
           MQNSLLKPRIIEVE LGAGHAKVVMEPFERGYGHTLGNALRRVLLSSM+GYAPTEVTIAG
Sbjct: 1   MQNSLLKPRIIEVETLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60

Query: 61  VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120
           VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRDEVTLTLKK+GEG VLASDIDLPHDVEL
Sbjct: 61  VVHEYSSLDGVQEDVVDMLLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVEL 120

Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180
           INPDHVIA+LTAGGKLDMQIKVEKGRGYVPGNVRRL+EDANKTIGRIILDASFSPVRRVS
Sbjct: 121 INPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLAEDANKTIGRIILDASFSPVRRVS 180

Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240
           Y+VESARVEQRTDLDKLVINIETNGVI          PEEAIRQSARVLVDQLNVFAALE
Sbjct: 181 YSVESARVEQRTDLDKLVINIETNGVI---------SPEEAIRQSARVLVDQLNVFAALE 231

Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300
           GTEA AEAPSRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN
Sbjct: 232 GTEAAAEAPSRAPSVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291

Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334
           LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK
Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325


>D8IUU7.1 D8IUU7_HERSS DNA-directed RNA polymerase subunit alpha EC=2.7.7.6
          Length = 325

 Score =  624 bits (1608), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/334 (94%), Positives = 317/334 (94%), Gaps = 9/334 (2%)

Query: 1   MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60
           MQNSLLKPRIIEVE L  GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG
Sbjct: 1   MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60

Query: 61  VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120
           VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEG VLASDIDLPHDVEL
Sbjct: 61  VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120

Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180
           INPDHVIANLT GGKLDMQIKVEKGRGYVPGNVRRLSED NKTIGRIILDASFSPVRRVS
Sbjct: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180

Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240
           YAVESARVEQRTDLDKLV+NIETNGVI          PEEAIRQSARVLVDQLNVFAALE
Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVI---------TPEEAIRQSARVLVDQLNVFAALE 231

Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300
           GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN
Sbjct: 232 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291

Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334
           LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK
Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325


>A2RQ11.1 A2RQ11_HERSE DNA-directed RNA polymerase subunit alpha EC=2.7.7.6
          Length = 325

 Score =  624 bits (1608), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/334 (94%), Positives = 317/334 (94%), Gaps = 9/334 (2%)

Query: 1   MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60
           MQNSLLKPRIIEVE L  GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG
Sbjct: 1   MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60

Query: 61  VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120
           VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEG VLASDIDLPHDVEL
Sbjct: 61  VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120

Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180
           INPDHVIANLT GGKLDMQIKVEKGRGYVPGNVRRLSED NKTIGRIILDASFSPVRRVS
Sbjct: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180

Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240
           YAVESARVEQRTDLDKLV+NIETNGVI          PEEAIRQSARVLVDQLNVFAALE
Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVI---------TPEEAIRQSARVLVDQLNVFAALE 231

Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300
           GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN
Sbjct: 232 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291

Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334
           LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK
Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325


>A4G9R3.1 RPOA_HERAR DNA-directed RNA polymerase subunit alpha EC=2.7.7.6
          Length = 325

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 312/334 (93%), Positives = 319/334 (95%), Gaps = 9/334 (2%)

Query: 1   MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60
           MQNSLLKPRIIEVE LGAGHAKVVMEPFERGYGHTLGNALRRVLLSSM+GYAPTEVTIAG
Sbjct: 1   MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60

Query: 61  VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120
           VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKKEGEG VLASDI+LPHDVEL
Sbjct: 61  VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKEGEGAVLASDIELPHDVEL 120

Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180
           +NPDHVIA+LTAGGKLDMQIKVEKGRGYVPGNVRRLSED NKTIGRIILDASFSPVRRVS
Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180

Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240
           YAVESARVEQRTDLDKLVINIETNGVI          PEEAIRQSARVLVDQLNVFAALE
Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVI---------TPEEAIRQSARVLVDQLNVFAALE 231

Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300
           GTEA A+APSRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN
Sbjct: 232 GTEAPADAPSRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291

Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334
           LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK
Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325


>A6T3H8.1 RPOA_JANMA DNA-directed RNA polymerase subunit alpha EC=2.7.7.6
          Length = 325

 Score =  618 bits (1594), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/334 (93%), Positives = 319/334 (95%), Gaps = 9/334 (2%)

Query: 1   MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60
           MQNSLLKPRIIEVE LGAGHAKVVMEPFERGYGHTLGNALRRVLLSSM+GYAPTEVTIAG
Sbjct: 1   MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60

Query: 61  VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120
           VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKK+GEG VLASDI+LPHDVEL
Sbjct: 61  VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKDGEGAVLASDIELPHDVEL 120

Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180
           +NPDHVIA+LTAGGKLDMQIKVEKGRGYVPGNVRRLSED NKTIGRIILDASFSPVRRVS
Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180

Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240
           YAVESARVEQRTDLDKLVINIETNGVI          PEEAIRQSARVLVDQLNVFAALE
Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVI---------SPEEAIRQSARVLVDQLNVFAALE 231

Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300
           GTEA A+APSRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN
Sbjct: 232 GTEAPADAPSRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291

Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334
           LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK
Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325