BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0288.p (258 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6T3H5.1 A6T3H5_JANMA ABC-2 type transport system permease protein 383 e-104 Q12FV1.1 Q12FV1_POLSJ ABC-2 type transporter, NodJ family 306 2e-81 Q21SJ2.1 Q21SJ2_RHOFD ABC-2 type transporter, NodJ family 303 1e-80 A1WH08.1 A1WH08_VEREI ABC-2 type transporter, NodJ family 300 1e-79 C5CPA5.1 C5CPA5_VARPS ABC-2 type transporter, NodJ family 297 1e-78 >A6T3H5.1 A6T3H5_JANMA ABC-2 type transport system permease protein Length = 261 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/256 (75%), Positives = 223/256 (87%) Query: 2 TTIYAPPVFSLRFYPIWRRNFLVWKKLMAASIIGNIAEPLITLIAFGYGLGSILKEIDGI 61 +T+YA PVFS R +PIWRRNFLVWKKL AS++GNIA+PLITL+AFGYGLGS+L +DGI Sbjct: 3 STLYALPVFSQRAFPIWRRNFLVWKKLAGASVLGNIADPLITLLAFGYGLGSLLTHVDGI 62 Query: 62 PYIHYLASGSICMSVMMASSFEALYSAYSRMSVQRTWDALMNAPLALDDIVLAELLWAAT 121 PYI YLAS SICMS+MMA+SFEALYSA+SRM VQ+TW+AL+NAPLALDD+V+AE+LWAAT Sbjct: 63 PYIQYLASASICMSIMMAASFEALYSAFSRMHVQKTWEALLNAPLALDDVVVAEMLWAAT 122 Query: 122 KSLFSGVAILCVMFALGIGLHPQVLLVLPLLFLAGMTFSALGLIMNALAKGYDFFTYYFT 181 K+L SGVAILCV+FALGIGLH LLVLPLLFL GM F++LGL+MNALAKGYDFFTYYFT Sbjct: 123 KALISGVAILCVIFALGIGLHWHTLLVLPLLFLIGMMFASLGLVMNALAKGYDFFTYYFT 182 Query: 182 LILTPMTFLSGVYYPVAQLPSWLQTVSQFLPLSAAVNLVRPLVLGGWPQAPLLDLAVLAF 241 L+LTPM FLSGVYYPVAQLP WLQ ++ LPL AAVNLVRPL+LG WP P LD+A+L Sbjct: 183 LVLTPMVFLSGVYYPVAQLPGWLQGIAGVLPLGAAVNLVRPLLLGHWPPTPWLDIAILLA 242 Query: 242 YCCAGFYVAVIFTRRR 257 YC FY AV+ TR+R Sbjct: 243 YCVVAFYAAVVLTRKR 258 >Q12FV1.1 Q12FV1_POLSJ ABC-2 type transporter, NodJ family Length = 274 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 159/259 (61%), Positives = 198/259 (76%), Gaps = 4/259 (1%) Query: 4 IYAPPVFSLRFYPIWRRNFLVWKKLMAASIIGNIAEPLITLIAFGYGLGSILKEID---- 59 ++ PP LR+ P++RRN LVW+KL S++GNIAEPLITL+AFGYGLG+++ ++ Sbjct: 14 LFRPPQIGLRWLPVFRRNLLVWRKLAIPSLVGNIAEPLITLVAFGYGLGALVGQVQLNGT 73 Query: 60 GIPYIHYLASGSICMSVMMASSFEALYSAYSRMSVQRTWDALMNAPLALDDIVLAELLWA 119 +PYI +LASGSICMS M A+SFEALYSA+SRM VQRTWD +MNAP+ LDD+V AE+LWA Sbjct: 74 TVPYILFLASGSICMSAMNAASFEALYSAFSRMQVQRTWDGIMNAPVRLDDVVFAEMLWA 133 Query: 120 ATKSLFSGVAILCVMFALGIGLHPQVLLVLPLLFLAGMTFSALGLIMNALAKGYDFFTYY 179 A KSLF+ IL VM ALGI P +LL PLL L G+TFS++ LI NALAKGYDFFTYY Sbjct: 134 AFKSLFTTSIILVVMLALGISHSPMLLLAWPLLGLVGITFSSIALIFNALAKGYDFFTYY 193 Query: 180 FTLILTPMTFLSGVYYPVAQLPSWLQTVSQFLPLSAAVNLVRPLVLGGWPQAPLLDLAVL 239 FTL LTP FLSGV++P QLP ++ +S +LPL+AAV LVRPL LG WP L LA+L Sbjct: 194 FTLFLTPTMFLSGVFFPRDQLPGVMRVISDWLPLTAAVELVRPLFLGQWPTQGLSHLALL 253 Query: 240 AFYCCAGFYVAVIFTRRRF 258 Y AGF+VA++ TR+RF Sbjct: 254 VGYAVAGFWVALVLTRKRF 272 >Q21SJ2.1 Q21SJ2_RHOFD ABC-2 type transporter, NodJ family Length = 273 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 150/260 (57%), Positives = 200/260 (76%), Gaps = 4/260 (1%) Query: 3 TIYAPPVFSLRFYPIWRRNFLVWKKLMAASIIGNIAEPLITLIAFGYGLGSILKEI--DG 60 +++ P S+R++P++ RN LVW+KL S++GNIAEPL+ L+AFGYG+G+++ ++ DG Sbjct: 12 SVWRAPELSMRWWPVFLRNLLVWRKLAIPSLVGNIAEPLMWLVAFGYGMGALVGKVSVDG 71 Query: 61 --IPYIHYLASGSICMSVMMASSFEALYSAYSRMSVQRTWDALMNAPLALDDIVLAELLW 118 +PYI +LASGSICMS M A+SFEALYSA+SRM VQ+TWD +MNAP+ LDDIVLAE+LW Sbjct: 72 TPVPYILFLASGSICMSAMQAASFEALYSAFSRMHVQKTWDGIMNAPVNLDDIVLAEMLW 131 Query: 119 AATKSLFSGVAILCVMFALGIGLHPQVLLVLPLLFLAGMTFSALGLIMNALAKGYDFFTY 178 AA K+LF+ AIL VM ALGI P++L+ P+L G+TFS + LI NALAKGYDFFTY Sbjct: 132 AAFKALFTVTAILGVMLALGISYSPKLLVAWPVLLGVGITFSCIALIFNALAKGYDFFTY 191 Query: 179 YFTLILTPMTFLSGVYYPVAQLPSWLQTVSQFLPLSAAVNLVRPLVLGGWPQAPLLDLAV 238 YFTL LTPM FLSG+++P+ QLP ++T+S +LPL+ AV LVRPL + WP L + V Sbjct: 192 YFTLFLTPMMFLSGIFFPLEQLPVVVRTISSWLPLTNAVELVRPLFMDQWPTHALRHVLV 251 Query: 239 LAFYCCAGFYVAVIFTRRRF 258 LA Y GF++A+ TR+RF Sbjct: 252 LAVYTVGGFWIALALTRKRF 271 >A1WH08.1 A1WH08_VEREI ABC-2 type transporter, NodJ family Length = 280 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 150/263 (57%), Positives = 195/263 (74%), Gaps = 8/263 (3%) Query: 4 IYAPPVFSLRFYPIWRRNFLVWKKLMAASIIGNIAEPLITLIAFGYGLGSILKEID---- 59 I+ P+ SLRF+P+++RN LVW+KL S++GNIAEPL+ L+AFGYG+G+++ ++ Sbjct: 16 IWRAPILSLRFWPVFQRNLLVWRKLAIPSLVGNIAEPLMWLVAFGYGMGALVGHVNVVGA 75 Query: 60 ----GIPYIHYLASGSICMSVMMASSFEALYSAYSRMSVQRTWDALMNAPLALDDIVLAE 115 +PYI +LASG+ICMS M A+SFEALYSA+SRM VQ+TWD+++NAP+ LDDIVLAE Sbjct: 76 QGAQQVPYILFLASGAICMSAMQAASFEALYSAFSRMHVQKTWDSILNAPVGLDDIVLAE 135 Query: 116 LLWAATKSLFSGVAILCVMFALGIGLHPQVLLVLPLLFLAGMTFSALGLIMNALAKGYDF 175 +LWAA KSLF+ AIL VM AL I P++LL P+L G+TFS + L+ NALAKGYDF Sbjct: 136 MLWAAFKSLFTVTAILGVMLALQISHSPKLLLAWPILLGVGITFSCIALVFNALAKGYDF 195 Query: 176 FTYYFTLILTPMTFLSGVYYPVAQLPSWLQTVSQFLPLSAAVNLVRPLVLGGWPQAPLLD 235 FTYYFTL LTPM FLSGV++P+ QLP LQ + +LPLS AV LVRPL + WPQ Sbjct: 196 FTYYFTLFLTPMMFLSGVFFPLEQLPRMLQAAASWLPLSNAVALVRPLFMDQWPQDAARH 255 Query: 236 LAVLAFYCCAGFYVAVIFTRRRF 258 VL Y A F++A+ TR+RF Sbjct: 256 ALVLLVYTVAAFWLALALTRKRF 278 >C5CPA5.1 C5CPA5_VARPS ABC-2 type transporter, NodJ family Length = 281 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 150/260 (57%), Positives = 197/260 (75%), Gaps = 4/260 (1%) Query: 3 TIYAPPVFSLRFYPIWRRNFLVWKKLMAASIIGNIAEPLITLIAFGYGLGSILKEI--DG 60 +++ P SLR++P++ RN LVW+KL S+IGNIAEPLI L+AFGYG+G+++ E+ DG Sbjct: 20 SVWRAPELSLRWWPVFLRNLLVWRKLAIPSLIGNIAEPLIWLVAFGYGMGALVGEVSVDG 79 Query: 61 --IPYIHYLASGSICMSVMMASSFEALYSAYSRMSVQRTWDALMNAPLALDDIVLAELLW 118 +PYI +LASGSICMS M A+SFEALYSA+SRM VQ+TWD +MNAP+ LDDIVLAE+LW Sbjct: 80 TRVPYILFLASGSICMSAMNAASFEALYSAFSRMHVQKTWDGIMNAPVGLDDIVLAEMLW 139 Query: 119 AATKSLFSGVAILCVMFALGIGLHPQVLLVLPLLFLAGMTFSALGLIMNALAKGYDFFTY 178 AA KS+F+ AIL VM LGI P++++ +L AG+TFS++ LI NALAKGYDFFTY Sbjct: 140 AAFKSIFTVTAILFVMLGLGISHSPKLIVAWTVLIGAGITFSSIALIFNALAKGYDFFTY 199 Query: 179 YFTLILTPMTFLSGVYYPVAQLPSWLQTVSQFLPLSAAVNLVRPLVLGGWPQAPLLDLAV 238 YFTL +TPM FLSGV++P+ QLPS ++ V+ +LPL+ AV LVRPL + WP + V Sbjct: 200 YFTLFMTPMMFLSGVFFPLEQLPSAVRAVAAWLPLTNAVALVRPLFMDQWPGGWWVHAGV 259 Query: 239 LAFYCCAGFYVAVIFTRRRF 258 L Y F+VA+ TR+RF Sbjct: 260 LVVYGVVSFWVALALTRKRF 279