BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0263.p         (146 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IUW7.1 D8IUW7_HERSS Protein-export protein secB                     249   1e-64
A6T312.1 SECB_JANMA Protein-export protein secB                       224   3e-57
F1VU02.1 F1VU02_9BURK Protein export cytoplasm chaperone protein      223   7e-57
A4G995.1 SECB_HERAR Protein-export protein secB                       223   8e-57
A1VKS9.2 SECB2_POLNA Protein-export protein secB 2                    203   8e-51

>D8IUW7.1 D8IUW7_HERSS Protein-export protein secB
          Length = 164

 Score =  249 bits (635), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 129/130 (99%)

Query: 1   MAEENQQAEQQPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPAIEVAVDVGAEALADGIFE 60
           M+E+NQ+A+QQPVFQIQRVYLKDLSLEQPNSPAIFLEQ+AP+IEV+VDVGAEALA+G+FE
Sbjct: 1   MSEQNQEAQQQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFE 60

Query: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEVRNIPAEQLDPLLGIGCPNIIYPYLRANIADV 120
           STVTITVTAKVKDKVAFLVEGKQAGIFE+RN+PAEQLDPLLGIGCPNIIYPYLRANIAD 
Sbjct: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADA 120

Query: 121 ITRAGFPPIH 130
           ITRAGFPP+H
Sbjct: 121 ITRAGFPPVH 130


>A6T312.1 SECB_JANMA Protein-export protein secB
          Length = 164

 Score =  224 bits (571), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/130 (83%), Positives = 119/130 (91%), Gaps = 4/130 (3%)

Query: 1   MAEENQQAEQQPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPAIEVAVDVGAEALADGIFE 60
           MA+EN Q    P+FQIQRVYLKDLSLEQPNSPAIFLEQ+ P IEVAVDVGA+ LA+GIFE
Sbjct: 1   MADENLQ----PLFQIQRVYLKDLSLEQPNSPAIFLEQEQPTIEVAVDVGAQPLAEGIFE 56

Query: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEVRNIPAEQLDPLLGIGCPNIIYPYLRANIADV 120
           STVTITVTAK+ DK+AFLVEGKQAGIFE+RNIP EQLDPLLGIGCPN+IYPYLRANIAD 
Sbjct: 57  STVTITVTAKIADKIAFLVEGKQAGIFEIRNIPDEQLDPLLGIGCPNVIYPYLRANIADA 116

Query: 121 ITRAGFPPIH 130
           ITRAGFPP+H
Sbjct: 117 ITRAGFPPVH 126


>F1VU02.1 F1VU02_9BURK Protein export cytoplasm chaperone protein
          Length = 162

 Score =  223 bits (568), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query: 11  QPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPAIEVAVDVGAEALADGIFESTVTITVTAK 70
           QP+FQIQRVYLKDLSLEQPNSPAIFLEQ+AP +EVAVDVGAE LA+GIFESTVTITVTAK
Sbjct: 7   QPIFQIQRVYLKDLSLEQPNSPAIFLEQEAPTMEVAVDVGAEPLAEGIFESTVTITVTAK 66

Query: 71  VKDKVAFLVEGKQAGIFEVRNIPAEQLDPLLGIGCPNIIYPYLRANIADVITRAGFPPIH 130
           + DKVAFLVEGKQAGIFE RNIP +QLDPLLGIGCPNI+YPYLRANIAD ITRAGFPP+H
Sbjct: 67  IGDKVAFLVEGKQAGIFEARNIPQDQLDPLLGIGCPNIVYPYLRANIADAITRAGFPPVH 126


>A4G995.1 SECB_HERAR Protein-export protein secB
          Length = 164

 Score =  223 bits (567), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 117/130 (90%), Gaps = 4/130 (3%)

Query: 1   MAEENQQAEQQPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPAIEVAVDVGAEALADGIFE 60
           MA+EN Q    PVFQIQRVYLKDLSLEQPNSPAIFLEQDAP IEVAVDVGAE LA+G+FE
Sbjct: 1   MADENLQ----PVFQIQRVYLKDLSLEQPNSPAIFLEQDAPVIEVAVDVGAEQLAEGLFE 56

Query: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEVRNIPAEQLDPLLGIGCPNIIYPYLRANIADV 120
           STVTITVTAK+ DKVAFLVE KQAGIFE RNIP EQLDPL+GIGCP+ IYPYLRANIAD 
Sbjct: 57  STVTITVTAKINDKVAFLVEAKQAGIFEARNIPDEQLDPLIGIGCPSTIYPYLRANIADA 116

Query: 121 ITRAGFPPIH 130
           ITRAGFPP+H
Sbjct: 117 ITRAGFPPVH 126


>A1VKS9.2 SECB2_POLNA Protein-export protein secB 2
          Length = 162

 Score =  203 bits (516), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 113/130 (86%), Gaps = 4/130 (3%)

Query: 1   MAEENQQAEQQPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPAIEVAVDVGAEALADGIFE 60
           M +EN+Q    P+FQIQRVYLK LSLEQPNSPAIFLE+ +P +EVAV   AE  ADGIFE
Sbjct: 1   MPDENKQ----PLFQIQRVYLKGLSLEQPNSPAIFLEEQSPTLEVAVSTIAEQQADGIFE 56

Query: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEVRNIPAEQLDPLLGIGCPNIIYPYLRANIADV 120
           STVT++VTAK++DKVAFLVE KQ+GIFE+R++PAEQL+P LGIGCP I+YPYLRANIAD 
Sbjct: 57  STVTVSVTAKIRDKVAFLVEAKQSGIFEIRHLPAEQLNPALGIGCPTILYPYLRANIADA 116

Query: 121 ITRAGFPPIH 130
           ITRAGFPP+H
Sbjct: 117 ITRAGFPPVH 126