BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0256.p         (228 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IUX2.1 D8IUX2_HERSS Carboxy-terminal processing protease trans...   222   2e-56
A6T317.1 A6T317_JANMA Carboxyl-terminal processing protease EC=3...   189   2e-46
A4G9A0.1 A4G9A0_HERAR Peptidase S41A, C-terminal protease EC=3.4...   180   2e-43
C3XBT2.1 C3XBT2_OXAFO Peptidase S41A                                  158   7e-37
F1VTZ7.1 F1VTZ7_9BURK Carboxy-terminal processing protease            157   8e-37

>D8IUX2.1 D8IUX2_HERSS Carboxy-terminal processing protease transmembrane
           protein EC=3.4.-.-
          Length = 498

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 121/139 (87%), Gaps = 1/139 (0%)

Query: 88  LTTARYYTPNGRSIQARGIVPDIMVDEYADGDGLNGLRLREADLTKHLTNDKDKDAKEVK 147
           LTTARYYTP GRSIQARGIVPDIMVDEY DGDGLNGLRLREADL+KHLTND DK A EVK
Sbjct: 358 LTTARYYTPKGRSIQARGIVPDIMVDEYPDGDGLNGLRLREADLSKHLTNDTDKSA-EVK 416

Query: 148 ASTVDEKEEERLIALEKKRKPLEFGSKEDFQLAQALNHLKGQPVQVSKVKPEIRDESSKD 207
           A ++DE+ EERLIA EKKRKP++FGSK+DFQL QALN LKG PV+VS  KPE+R+E  K+
Sbjct: 417 AKSMDEQSEERLIAAEKKRKPMDFGSKDDFQLMQALNQLKGLPVKVSNAKPEVRNEEGKN 476

Query: 208 DKPVKDIRKDNKAPPEKIE 226
           D PVKD RKDNKAP EKI+
Sbjct: 477 DTPVKDERKDNKAPAEKID 495


>A6T317.1 A6T317_JANMA Carboxyl-terminal processing protease EC=3.4.21.102
          Length = 499

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/220 (50%), Positives = 144/220 (65%), Gaps = 12/220 (5%)

Query: 20  YERIALDARRLIDGDQAYIGAMLSRIAQIL--NAGNHVLACTADGAHLGGERVSLL---- 73
           Y R    A R +    A +   L +I  ++  N+G+   +    GA    +R +++    
Sbjct: 281 YARREFYASRSVGDPLAKLPEALKKIPMVVLVNSGSASASEIVAGALQDHKRATIMGTQT 340

Query: 74  LARASGDFLRRL-----LPLTTARYYTPNGRSIQARGIVPDIMVDEYADGDGLNGLRLRE 128
             + S   +R+L     + LTTARYYTP+GRSIQA+GIVPD+MVDE ADGDGLNGLRLRE
Sbjct: 341 FGKGSVQTIRQLSADTAVKLTTARYYTPSGRSIQAKGIVPDLMVDETADGDGLNGLRLRE 400

Query: 129 ADLTKHLTNDKDKDAKEVKASTVDEKEEERLIALEKKRKPLEFGSKEDFQLAQALNHLKG 188
           ADL KHLTNDKDK   EV A+  + +EE+RL ALEKKRKPLEFGSK+DFQL QALNHLKG
Sbjct: 401 ADLQKHLTNDKDK-GPEVHAAVDELEEEQRLAALEKKRKPLEFGSKDDFQLTQALNHLKG 459

Query: 189 QPVQVSKVKPEIRDESSKDDKPVKDIRKDNKAPPEKIEKK 228
            PV +SK KPE + E    +KP  + + + KA P+  +KK
Sbjct: 460 LPVVLSKAKPEPKKEEPGINKPKTEPKPEPKAEPKNGDKK 499


>A4G9A0.1 A4G9A0_HERAR Peptidase S41A, C-terminal protease EC=3.4.21.102
          Length = 492

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/223 (47%), Positives = 143/223 (64%), Gaps = 16/223 (7%)

Query: 17  AKSYERIALDARRLIDGDQAYIGAMLSRIAQIL--NAGNHVLACTADGAHLGGERVSLL- 73
           A  Y R    A R +    A +   + +I  ++  N+G+   +    GA    +R +++ 
Sbjct: 275 ASFYARREFYAARAVGDPLAKLPDAIKKIPMVVLVNSGSASASEIVAGALQDYKRATIMG 334

Query: 74  ---LARASGDFLRRL-----LPLTTARYYTPNGRSIQARGIVPDIMVDEYADGDGLNGLR 125
                + S   +R+L     + LTTARYYTPNGRSIQA+GIVPD+MVDE ADGDGLN LR
Sbjct: 335 TQTFGKGSVQTIRQLSADTAVKLTTARYYTPNGRSIQAKGIVPDLMVDETADGDGLNSLR 394

Query: 126 LREADLTKHLTNDKDKDAKEVKASTVDEKEEERLIALEKKRKPLEFGSKEDFQLAQALNH 185
           LREADL KHLTNDKDK+A+  +    + +E++R+ ALEKKRKPLEFGSK+DFQL QALNH
Sbjct: 395 LREADLQKHLTNDKDKEAESARPGLDELEEDQRIAALEKKRKPLEFGSKDDFQLTQALNH 454

Query: 186 LKGQPVQVSKVKPEIRDESSKDDKPVKDIRKDNKAPPEKIEKK 228
           LKG PV +SKVK E++ E+      +   + ++K  P+  +KK
Sbjct: 455 LKGLPVVLSKVKVEVKKEAG-----INQPKTESKTEPKNGDKK 492


>C3XBT2.1 C3XBT2_OXAFO Peptidase S41A
          Length = 473

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 94/112 (83%), Gaps = 3/112 (2%)

Query: 88  LTTARYYTPNGRSIQARGIVPDIMVDEYADGDGLNGLRLREADLTKHLTNDKDKDAKEVK 147
           LTTARYYTP+GRSIQA+GIVPD+MVDE A+GDG+NGLRLREADL+KHLTN  D+   E  
Sbjct: 355 LTTARYYTPSGRSIQAKGIVPDLMVDETAEGDGINGLRLREADLSKHLTNGTDEVKNE-- 412

Query: 148 ASTVDEKEEERLIALEKKRKPLEFGSKEDFQLAQALNHLKGQPVQVSKVKPE 199
              +++ EE +L+   KK KP+E+G+K+DFQL QALNHLKG+PVQ+SKVKPE
Sbjct: 413 -DRLNQDEEIKLLESAKKYKPIEYGTKKDFQLMQALNHLKGKPVQLSKVKPE 463


>F1VTZ7.1 F1VTZ7_9BURK Carboxy-terminal processing protease
          Length = 493

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/183 (54%), Positives = 123/183 (67%), Gaps = 13/183 (7%)

Query: 48  ILNAGNHVLACTADGAHLGGERVSLL----LARASGDFLRRL-----LPLTTARYYTPNG 98
           ++NAG+   +    GA    +R  ++      + S   +R+L     + LTTARYYTPNG
Sbjct: 307 LINAGSASASEIVAGALQDYKRAIIMGSQSFGKGSVQTIRQLSADTAVKLTTARYYTPNG 366

Query: 99  RSIQARGIVPDIMVDEYADGDGLNGLRLREADLTKHLTNDKDKDAKEVKASTVD-EKEEE 157
           RSIQA+GIVPD+MVDEYADGDGLN  RL E+DL KHL+ND DK A E      D  +E  
Sbjct: 367 RSIQAKGIVPDMMVDEYADGDGLNSFRLHESDLQKHLSNDTDKAAAEAIKPVFDEAEEAR 426

Query: 158 RLIALEKKRKPLEFGSKEDFQLAQALNHLKGQPVQVSKVKPEIRDESSKDDKPVKD-IRK 216
           R  A+ KKRKPLEFGSKEDFQL QALN LKG PVQ+SKV PEIR +  K+  P KD ++K
Sbjct: 427 RAAAIAKKRKPLEFGSKEDFQLTQALNQLKGLPVQLSKVTPEIRKDGEKE--PGKDTLKK 484

Query: 217 DNK 219
           ++K
Sbjct: 485 EDK 487