BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0237.p (266 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0V4.1 D8J0V4_HERSS ABC-type metal ion transport system, perip... 446 e-123 B0RKH7.1 B0RKH7_HERSE Periplasmic component protein 446 e-123 C6BEX7.1 C6BEX7_RALP1 Lipoprotein, YaeC family 399 e-109 B2U8A1.1 B2U8A1_RALPJ Lipoprotein, YaeC family 399 e-109 E2SZ56.1 E2SZ56_9RALS D-methionine ABC transporter, periplasmic ... 399 e-109 >D8J0V4.1 D8J0V4_HERSS ABC-type metal ion transport system, periplasmic component/surface antigen protein Length = 265 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/266 (82%), Positives = 249/266 (93%), Gaps = 1/266 (0%) Query: 1 MNRRQLIQFFAGLGVVAGLVSAPVLAQDKPIKIGATGGPHAEILEQVKKIAEKDGLKLQI 60 M RRQLIQF AGLG+ AGLVSAP AQD+ IK+G T GPHAEI+EQVKK+ EKDG+++++ Sbjct: 1 MKRRQLIQFIAGLGLAAGLVSAPAFAQDQ-IKMGVTAGPHAEIMEQVKKLLEKDGVQMKV 59 Query: 61 VEFSDYIQPNAALSAGDLDANSYQHQPYLDAQVKDRGYKLVSVGTTITFPMGVYSKKIKS 120 +EF+DYIQPNAAL+AGDLDANSYQHQPYLDAQ+KDRGYK VSVG+TITFPMGVYSKKIKS Sbjct: 60 IEFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKS 119 Query: 121 LNDLKNGARVGIPNDPTNGGRALLLLQAQGVLKLKADAGLKATPLDIVDNPKKVKIIELD 180 LNDLK GARVG+PNDPTNGGRALL+LQA+GV+KLKADAGLKATPLDIV+NPKK+KI+ELD Sbjct: 120 LNDLKQGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELD 179 Query: 181 AAQLPRSLDDFDAAAINGNFAESAGLSPTKDGIAIEAAKGPYVNVIAVRVEDKDKPWVAK 240 AAQLPRSLDDFDAA INGN+AESAGLSPTKD IA+EA+ GPY NVIAVR+ DKDKPWVAK Sbjct: 180 AAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAK 239 Query: 241 LVKAYHSPEIKKFVIEKYKNSVVTSW 266 LVKAYHSPE+KKFV+EKYK SV+TSW Sbjct: 240 LVKAYHSPEVKKFVLEKYKGSVITSW 265 >B0RKH7.1 B0RKH7_HERSE Periplasmic component protein Length = 265 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 220/266 (82%), Positives = 249/266 (93%), Gaps = 1/266 (0%) Query: 1 MNRRQLIQFFAGLGVVAGLVSAPVLAQDKPIKIGATGGPHAEILEQVKKIAEKDGLKLQI 60 M RRQLIQF AGLG+ AGLVSAP AQD+ IK+G T GPHAEI+EQVKK+ EKDG+++++ Sbjct: 1 MKRRQLIQFIAGLGLAAGLVSAPAFAQDQ-IKMGVTAGPHAEIMEQVKKLLEKDGVQMKV 59 Query: 61 VEFSDYIQPNAALSAGDLDANSYQHQPYLDAQVKDRGYKLVSVGTTITFPMGVYSKKIKS 120 +EF+DYIQPNAAL+AGDLDANSYQHQPYLDAQ+KDRGYK VSVG+TITFPMGVYSKKIKS Sbjct: 60 IEFTDYIQPNAALAAGDLDANSYQHQPYLDAQIKDRGYKFVSVGSTITFPMGVYSKKIKS 119 Query: 121 LNDLKNGARVGIPNDPTNGGRALLLLQAQGVLKLKADAGLKATPLDIVDNPKKVKIIELD 180 LNDLK GARVG+PNDPTNGGRALL+LQA+GV+KLKADAGLKATPLDIV+NPKK+KI+ELD Sbjct: 120 LNDLKQGARVGVPNDPTNGGRALLVLQAKGVIKLKADAGLKATPLDIVENPKKIKIVELD 179 Query: 181 AAQLPRSLDDFDAAAINGNFAESAGLSPTKDGIAIEAAKGPYVNVIAVRVEDKDKPWVAK 240 AAQLPRSLDDFDAA INGN+AESAGLSPTKD IA+EA+ GPY NVIAVR+ DKDKPWVAK Sbjct: 180 AAQLPRSLDDFDAAVINGNYAESAGLSPTKDAIAVEASTGPYANVIAVRIADKDKPWVAK 239 Query: 241 LVKAYHSPEIKKFVIEKYKNSVVTSW 266 LVKAYHSPE+KKFV+EKYK SV+TSW Sbjct: 240 LVKAYHSPEVKKFVLEKYKGSVITSW 265 >C6BEX7.1 C6BEX7_RALP1 Lipoprotein, YaeC family Length = 266 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/266 (74%), Positives = 229/266 (86%) Query: 1 MNRRQLIQFFAGLGVVAGLVSAPVLAQDKPIKIGATGGPHAEILEQVKKIAEKDGLKLQI 60 MNRRQL+Q+ A LG LV+ LAQ KPIKIG T GPHAEI+E+VKK+AEKDGLKLQI Sbjct: 1 MNRRQLLQWSASLGAALALVAGSALAQSKPIKIGVTAGPHAEIMEEVKKVAEKDGLKLQI 60 Query: 61 VEFSDYIQPNAALSAGDLDANSYQHQPYLDAQVKDRGYKLVSVGTTITFPMGVYSKKIKS 120 VEF+DYIQPNAAL+AGDLDANSYQHQPYLD Q+ RGYK VSVG TITFPMG+YSKKIKS Sbjct: 61 VEFNDYIQPNAALAAGDLDANSYQHQPYLDDQIATRGYKFVSVGQTITFPMGIYSKKIKS 120 Query: 121 LNDLKNGARVGIPNDPTNGGRALLLLQAQGVLKLKADAGLKATPLDIVDNPKKVKIIELD 180 L +LK+GAR G+PNDPTNGGRALLLLQ+QGV+KLK +AG KA+P D+ +NPKK+K +ELD Sbjct: 121 LKELKDGARFGLPNDPTNGGRALLLLQSQGVIKLKPNAGFKASPRDVAENPKKLKFVELD 180 Query: 181 AAQLPRSLDDFDAAAINGNFAESAGLSPTKDGIAIEAAKGPYVNVIAVRVEDKDKPWVAK 240 AAQLPRSLDD DAAAINGN+AE A L PTKDGIAIE+ KGPY NVIA+RV DKD+PWVAK Sbjct: 181 AAQLPRSLDDLDAAAINGNYAEKANLDPTKDGIAIESPKGPYANVIAIRVADKDQPWVAK 240 Query: 241 LVKAYHSPEIKKFVIEKYKNSVVTSW 266 LVKAYHS +K FV KYK++V+ +W Sbjct: 241 LVKAYHSDAVKSFVKTKYKDAVIVAW 266 >B2U8A1.1 B2U8A1_RALPJ Lipoprotein, YaeC family Length = 266 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/266 (74%), Positives = 228/266 (85%) Query: 1 MNRRQLIQFFAGLGVVAGLVSAPVLAQDKPIKIGATGGPHAEILEQVKKIAEKDGLKLQI 60 MNRRQL+Q+ A LG LV+ LAQ KPIKIG T GPHAEI+E+VKK+AEKDGLKLQI Sbjct: 1 MNRRQLLQWSASLGAALALVAGSALAQSKPIKIGVTAGPHAEIMEEVKKVAEKDGLKLQI 60 Query: 61 VEFSDYIQPNAALSAGDLDANSYQHQPYLDAQVKDRGYKLVSVGTTITFPMGVYSKKIKS 120 VEF+DYIQPNAAL+AGDLDANSYQHQPYLD Q+ RGYK VSVG TITFPMG+YSKKIKS Sbjct: 61 VEFNDYIQPNAALAAGDLDANSYQHQPYLDDQIATRGYKFVSVGQTITFPMGIYSKKIKS 120 Query: 121 LNDLKNGARVGIPNDPTNGGRALLLLQAQGVLKLKADAGLKATPLDIVDNPKKVKIIELD 180 L +LK+GAR G+PNDPTNGGRALLLLQ+QGV+KLK +AG KA+P D+ DNPKK+K +ELD Sbjct: 121 LKELKDGARFGLPNDPTNGGRALLLLQSQGVIKLKPNAGFKASPRDVADNPKKLKFVELD 180 Query: 181 AAQLPRSLDDFDAAAINGNFAESAGLSPTKDGIAIEAAKGPYVNVIAVRVEDKDKPWVAK 240 AAQLPRSLDD DAAAINGN+AE A L PTKDGIAIE+ KGPY NVIA+R DKD+PWVAK Sbjct: 181 AAQLPRSLDDLDAAAINGNYAEKANLDPTKDGIAIESPKGPYANVIAIRAADKDQPWVAK 240 Query: 241 LVKAYHSPEIKKFVIEKYKNSVVTSW 266 LVKAYHS +K FV KYK++V+ +W Sbjct: 241 LVKAYHSDAVKSFVKAKYKDAVIVAW 266 >E2SZ56.1 E2SZ56_9RALS D-methionine ABC transporter, periplasmic D-methionine-binding protein Length = 266 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 199/266 (74%), Positives = 228/266 (85%) Query: 1 MNRRQLIQFFAGLGVVAGLVSAPVLAQDKPIKIGATGGPHAEILEQVKKIAEKDGLKLQI 60 MNRRQL+Q+ A LG LV+ LAQ KPIKIG T GPHAEI+E+VKK+AEKDGLKLQI Sbjct: 1 MNRRQLLQWSASLGAALALVAGSALAQSKPIKIGVTAGPHAEIMEEVKKVAEKDGLKLQI 60 Query: 61 VEFSDYIQPNAALSAGDLDANSYQHQPYLDAQVKDRGYKLVSVGTTITFPMGVYSKKIKS 120 VEF+DYIQPNAAL+AGDLDANSYQHQPYLD Q+ RGYK VSVG TITFPMG+YSKKIKS Sbjct: 61 VEFNDYIQPNAALAAGDLDANSYQHQPYLDDQIATRGYKFVSVGQTITFPMGIYSKKIKS 120 Query: 121 LNDLKNGARVGIPNDPTNGGRALLLLQAQGVLKLKADAGLKATPLDIVDNPKKVKIIELD 180 L +LK GAR G+PNDPTNGGRALLLLQ+QGV+KLK +AG KA+P D+ +NPKK+K +ELD Sbjct: 121 LKELKEGARFGLPNDPTNGGRALLLLQSQGVIKLKPNAGFKASPRDVAENPKKLKFVELD 180 Query: 181 AAQLPRSLDDFDAAAINGNFAESAGLSPTKDGIAIEAAKGPYVNVIAVRVEDKDKPWVAK 240 AAQLPRSLDD DAAAINGN+AE A L PTKDGIAIE+ KGPY NVIA+RV DKD+PWVAK Sbjct: 181 AAQLPRSLDDLDAAAINGNYAEKANLDPTKDGIAIESPKGPYANVIAIRVADKDQPWVAK 240 Query: 241 LVKAYHSPEIKKFVIEKYKNSVVTSW 266 LVKAYHS +K FV KYK++V+ +W Sbjct: 241 LVKAYHSDAVKSFVKTKYKDAVIVAW 266