BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0200.p (272 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C6BLQ0.1 C6BLQ0_RALP1 Transcriptional regulator, AraC family 357 1e-96 B2UK09.1 B2UK09_RALPJ Transcriptional regulator, AraC family 357 1e-96 E2SUH2.1 E2SUH2_9RALS Transcriptional regulator DarR 354 8e-96 D8IRD9.1 D8IRD9_HERSS Transcription regulator protein 334 6e-90 D1RN62.1 D1RN62_SEROD Putative AraC subfamily transcriptional re... 306 3e-81 >C6BLQ0.1 C6BLQ0_RALP1 Transcriptional regulator, AraC family Length = 320 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 222/316 (70%), Gaps = 55/316 (17%) Query: 1 MRKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAV 60 MR+IGFL+F CSLLDFTGPLTAFDVANR+ Y++ V+SE G ++SA G + Sbjct: 1 MRRIGFLVFPGCSLLDFTGPLTAFDVANRL----AAHPAYRIEVLSEAGAQVQSAPGLVM 56 Query: 61 VTHPLDRTAFDTLIVAGGAG---------------------------------------- 80 T LD AFDTL+++GG G Sbjct: 57 QTQALDDPAFDTLVISGGNGPRDDAFSPGLIAFVREAAQHSRRMTSVCSGAFALAAAGLL 116 Query: 81 -----------XARLQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVE 129 A+LQR +P V V +D+IFI+DG VWTSAGIS+GIDLALALIE DLG++ Sbjct: 117 DGRRATTHWRMAAQLQRRYPRVHVQADRIFIQDGPVWTSAGISSGIDLALALIEADLGID 176 Query: 130 LARAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIAC 189 ++RAVARELVVYHRRPGGQSQFS LLE+DP S RI LSYAR+HLHE+L V+RLAE+A Sbjct: 177 VSRAVARELVVYHRRPGGQSQFSALLELDPASTRIARALSYARDHLHEALDVDRLAEVAH 236 Query: 190 LSRRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRAF 249 LSRRQFDRAF AETGQTPAKAIEKLRAEAARPRVEAG ESLE+IARAVGF DPERMRRAF Sbjct: 237 LSRRQFDRAFVAETGQTPAKAIEKLRAEAARPRVEAGNESLEHIARAVGFADPERMRRAF 296 Query: 250 LRVFGYPPQAIRRAQR 265 +RVFG+PPQ++RR+ R Sbjct: 297 IRVFGHPPQSVRRSGR 312 >B2UK09.1 B2UK09_RALPJ Transcriptional regulator, AraC family Length = 320 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/316 (59%), Positives = 222/316 (70%), Gaps = 55/316 (17%) Query: 1 MRKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAV 60 MR+IGFL+F CSLLDFTGPLTAFDVANR+ Y++ V+SE G ++SA G + Sbjct: 1 MRRIGFLVFPGCSLLDFTGPLTAFDVANRL----AAHPAYRIEVLSEAGAQVQSAPGLVM 56 Query: 61 VTHPLDRTAFDTLIVAGGAG---------------------------------------- 80 T LD AFDTL+++GG G Sbjct: 57 QTQALDDPAFDTLVISGGNGPRDDAFSPGLIAFVREAAQHSRRMTSVCSGAFALAAAGLL 116 Query: 81 -----------XARLQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVE 129 A+LQR +P V V +D+IFI+DG VWTSAGIS+GIDLALALIE DLG++ Sbjct: 117 DGRRATTHWRMAAQLQRRYPRVHVQADRIFIQDGPVWTSAGISSGIDLALALIEADLGID 176 Query: 130 LARAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIAC 189 ++RAVARELVVYHRRPGGQSQFS LLE+DP S RI LSYAR+HLHE+L V+RLAE+A Sbjct: 177 VSRAVARELVVYHRRPGGQSQFSALLELDPASTRIARALSYARDHLHEALDVDRLAEVAH 236 Query: 190 LSRRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRAF 249 LSRRQFDRAF AETGQTPAKAIEKLRAEAARPRVEAG ESLE+IARAVGF DPERMRRAF Sbjct: 237 LSRRQFDRAFVAETGQTPAKAIEKLRAEAARPRVEAGNESLEHIARAVGFADPERMRRAF 296 Query: 250 LRVFGYPPQAIRRAQR 265 +RVFG+PPQ++RR+ R Sbjct: 297 IRVFGHPPQSVRRSGR 312 >E2SUH2.1 E2SUH2_9RALS Transcriptional regulator DarR Length = 320 Score = 354 bits (908), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 193/321 (60%), Positives = 222/321 (69%), Gaps = 57/321 (17%) Query: 1 MRKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRP-YQLRVMSEQGGMLESASGTA 59 MR+IGFL+F CSLLDFTGPLTAFDVANR+ ++P Y++ V+SE G ++SA G Sbjct: 1 MRRIGFLVFPGCSLLDFTGPLTAFDVANRL-----AAQPAYRIDVLSEGGAQVQSAPGLV 55 Query: 60 VVTHPLDRTAFDTLIVAGGAG--------------------------------------- 80 + T LD AFDTL+++GG G Sbjct: 56 MQTQGLDDPAFDTLVISGGNGPREDAFSPRLIAFVREAAAHSRRMTSVCSGAFALAAAGL 115 Query: 81 ------------XARLQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGV 128 A LQR +P VQV SD IFI DG VWTSAGIS+GIDLALALIEEDLGV Sbjct: 116 LDGRRATTHWRMAALLQRRYPRVQVQSDHIFIHDGPVWTSAGISSGIDLALALIEEDLGV 175 Query: 129 ELARAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIA 188 +++RAVARELVVYHRRPGGQSQFS LLE+DP S RI L YAR HLHE+L V+RLAE+A Sbjct: 176 DVSRAVARELVVYHRRPGGQSQFSTLLELDPASSRIARALGYAREHLHEALDVDRLAEVA 235 Query: 189 CLSRRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRA 248 LSRRQFDRAF AETGQTPAKAIEKLRAE ARPRVEAG+ESLE+IARAVGF DPERMRRA Sbjct: 236 HLSRRQFDRAFVAETGQTPAKAIEKLRAEIARPRVEAGDESLEHIARAVGFADPERMRRA 295 Query: 249 FLRVFGYPPQAIRRAQRRQET 269 F+RVFG PPQ++RR+ R T Sbjct: 296 FIRVFGQPPQSVRRSGRSGHT 316 >D8IRD9.1 D8IRD9_HERSS Transcription regulator protein Length = 330 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 178/319 (55%), Positives = 221/319 (69%), Gaps = 55/319 (17%) Query: 1 MRKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAV 60 +R+ FL+F DCS+LDFTGPL+AFD ANR+ GK+ Y+L + SE GGM+ S++G + Sbjct: 3 LRETAFLIFADCSMLDFTGPLSAFDAANRL---AGKT-LYRLTLYSEPGGMIRSSAGALI 58 Query: 61 VTHPLDRTAFDTLIVAGGAG---------------------------------------- 80 T + RT+FDTLIVAGG Sbjct: 59 HTERIGRTSFDTLIVAGGGAPREGLVSPALRRHVLRAAARSRRIAGICTGAFVLAATGLL 118 Query: 81 -----------XARLQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVE 129 A+LQ+MHP+V+VDSD+I+ +DG VWTSAGISAGIDLALALIE+D GVE Sbjct: 119 DGKRATTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVE 178 Query: 130 LARAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIAC 189 LAR+VARELVVYHRRPGGQSQFS L EMD S RIR L +AR HLH++LTV+ LAE+AC Sbjct: 179 LARSVARELVVYHRRPGGQSQFSALQEMDGGSERIRRALGFAREHLHQALTVDLLAEVAC 238 Query: 190 LSRRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRAF 249 LSRRQFDRAF+AETGQTPA+AIE++RAEAAR R+E +++LE+IARA GF D +RMRRA Sbjct: 239 LSRRQFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRAC 298 Query: 250 LRVFGYPPQAIRRAQRRQE 268 LR+FG PPQA+RR R ++ Sbjct: 299 LRLFGQPPQAMRRLARAED 317 >D1RN62.1 D1RN62_SEROD Putative AraC subfamily transcriptional regulator Length = 314 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 166/316 (52%), Positives = 202/316 (63%), Gaps = 55/316 (17%) Query: 1 MRKIGFLLFLDCSLLDFTGPLTAFDVANRIREGEGKSRPYQLRVMSEQGGMLESASGTAV 60 M+ IGF++F D +LLDF GPL AF+ A+R + Y+ +S+ GGM+ +SG AV Sbjct: 1 MKNIGFVIFPDFNLLDFAGPLAAFEQADRFADAPA----YRCLPVSQAGGMVIGSSGVAV 56 Query: 61 VTHPLDRTAFDTLIVAGGAG---------------------------------------- 80 +T PLD + FDTL++AGG G Sbjct: 57 MTQPLDDSRFDTLLIAGGRGNVAAAESPALIAMLQQQSRQVRRMASVCTGAFILAAAGLL 116 Query: 81 -----------XARLQRMHPSVQVDSDKIFIKDGDVWTSAGISAGIDLALALIEEDLGVE 129 ARLQ+ +P ++VDS++IFI+DG WTSAGISAGIDLALA+IEEDLG E Sbjct: 117 EGKRATTHWFHAARLQQRYPRIRVDSNRIFIRDGAFWTSAGISAGIDLALAMIEEDLGAE 176 Query: 130 LARAVARELVVYHRRPGGQSQFSNLLEMDPPSGRIRETLSYARNHLHESLTVERLAEIAC 189 A VAR+LVVYHRRPGGQSQ+S LL ++P S RIR LSYAR HLH+ L V LA+ AC Sbjct: 177 AAANVARQLVVYHRRPGGQSQYSLLLALNPSSDRIRSALSYAREHLHQPLRVTDLADAAC 236 Query: 190 LSRRQFDRAFSAETGQTPAKAIEKLRAEAARPRVEAGEESLENIARAVGFDDPERMRRAF 249 LS RQF R F +ETGQTPAK IE+LR EAAR R+E E+LE IARAVGF DPERMRRAF Sbjct: 237 LSERQFGRLFRSETGQTPAKVIEQLRVEAARVRIEESGEALEAIARAVGFSDPERMRRAF 296 Query: 250 LRVFGYPPQAIRRAQR 265 +RVFG PQA+RR R Sbjct: 297 IRVFGLSPQAMRRLSR 312