BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0162.p (505 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8INU7.1 D8INU7_HERSS Methyl-accepting chemotaxis I (Serine chem... 415 e-113 Q3SIF3.1 Q3SIF3_THIDA Chemotaxis sensory transducer 398 e-108 Q3SIF6.1 Q3SIF6_THIDA Chemotaxis sensory transducer 383 e-104 F1VZT6.1 F1VZT6_9BURK Methyl-accepting chemotaxis protein I (Ser... 382 e-104 A6SU26.1 A6SU26_JANMA Methyl-accepting chemotaxis protein 382 e-104 >D8INU7.1 D8INU7_HERSS Methyl-accepting chemotaxis I (Serine chemoreceptor) transmembrane protein Length = 574 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/311 (79%), Positives = 267/311 (85%), Gaps = 6/311 (1%) Query: 157 GDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLSNR 216 GDLTQ + DEA +V++L MQT LAAT+NE+K+SAA+IAVAS EIA GN DLSNR Sbjct: 230 GDLTQDFHDHGRDEAATMVNALEAMQTNLAATLNEVKESAAVIAVASHEIARGNVDLSNR 289 Query: 217 TESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMGSI 276 TESQASSLEETASSMEQLTSTV+QNAENA QANQLV+SASDYA KGG+VVGDVV TMGSI Sbjct: 290 TESQASSLEETASSMEQLTSTVQQNAENARQANQLVVSASDYATKGGRVVGDVVATMGSI 349 Query: 277 KESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 336 KESS KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA Sbjct: 350 KESSSKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAA 409 Query: 337 KEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAEVN 396 KEIK LI DSV KVDAGGKLVDEAG TMSEIVTSVKHVADIMGEITAAS+EQSAGIAEVN Sbjct: 410 KEIKGLISDSVEKVDAGGKLVDEAGATMSEIVTSVKHVADIMGEITAASQEQSAGIAEVN 469 Query: 397 GAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNA------AFAAQPVN 450 AI QIDEITQQNAALVEQAAAAAESLQEQAD+LARAV VF++ A Sbjct: 470 HAITQIDEITQQNAALVEQAAAAAESLQEQADVLARAVAVFRLKTAQAQGSIPTPPPVPA 529 Query: 451 TPSMLKTVNPP 461 P+ L+TVN P Sbjct: 530 PPAPLRTVNTP 540 >Q3SIF3.1 Q3SIF3_THIDA Chemotaxis sensory transducer Length = 572 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/356 (67%), Positives = 272/356 (76%), Gaps = 25/356 (7%) Query: 155 ASGDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLS 214 A+GDLTQ +E +S DE GQL+ +L M LA V +++ IAVAS+EIA+GNADLS Sbjct: 237 AAGDLTQKIEVQSQDETGQLMQALKDMNVSLADIVGQVRHGTDTIAVASREIASGNADLS 296 Query: 215 NRTESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMG 274 +RTESQASSLEETASSME+LTSTV+QNAENA QANQLV+S +D AVKGG+VVG VV TM Sbjct: 297 SRTESQASSLEETASSMEELTSTVRQNAENARQANQLVVSTADVAVKGGEVVGQVVDTMA 356 Query: 275 SIKESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 334 SIK+SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA Sbjct: 357 SIKDSSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAG 416 Query: 335 AAKEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAE 394 AAKEIK+LI DSV KVDAG KLVDEAG TM EIV+SVK V DIM EI AAS+EQSAGI + Sbjct: 417 AAKEIKSLIEDSVGKVDAGSKLVDEAGKTMDEIVSSVKRVTDIMSEIAAASQEQSAGIEQ 476 Query: 395 VNGAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNAAFAAQ---PVNT 451 VN A+ Q+DE+TQQNAALVE+AAAAAESLQEQA LA AV VF++D A+A + PV+ Sbjct: 477 VNQAVGQMDEMTQQNAALVEEAAAAAESLQEQAAKLADAVSVFRLD-GAYAQRREVPVSA 535 Query: 452 PSMLKTVNPPLELATEAATHAAPAIKPAAARKTTLAPTPKRSTAPQ--DEGSWEEF 505 P + PL T PA PAA PK+ A Q D G WEEF Sbjct: 536 PRV-----APL------PTRPRPASVPAA--------RPKKLAAAQGNDGGDWEEF 572 >Q3SIF6.1 Q3SIF6_THIDA Chemotaxis sensory transducer Length = 559 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/354 (65%), Positives = 270/354 (76%), Gaps = 26/354 (7%) Query: 157 GDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLSNR 216 G+ ++++ D + L++++N M+ L TV I+Q+A IAVAS+EIA+GNADLS+R Sbjct: 227 GNFSRSITLDKGDNSS-LLYAINGMRENLTVTVGSIRQAADTIAVASREIASGNADLSSR 285 Query: 217 TESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMGSI 276 TESQASSLEETASSME+LTSTV+QNAENA QANQLV+S +D AVKGG+VVG VV TM SI Sbjct: 286 TESQASSLEETASSMEELTSTVRQNAENARQANQLVVSTADVAVKGGEVVGQVVDTMASI 345 Query: 277 KESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 336 K+SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA Sbjct: 346 KDSSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAA 405 Query: 337 KEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAEVN 396 KEIK+LI DSV KVDAG KLVDEAG TM EIV+SVK V DIM EI AAS+EQSAGI +VN Sbjct: 406 KEIKSLIEDSVGKVDAGSKLVDEAGKTMDEIVSSVKRVTDIMSEIAAASQEQSAGIEQVN 465 Query: 397 GAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNAAFAAQ---PVNTPS 453 A+ Q+DE+TQQNAALVE+AAAAAESLQEQA LA AV VF++D A+A + PV+ P Sbjct: 466 QAVGQMDEMTQQNAALVEEAAAAAESLQEQAAKLADAVSVFRLD-GAYAQRREVPVSAPR 524 Query: 454 MLKTVNPPLELATEAATHAAPAIKPAAARKTTLAPTPKRSTAPQ--DEGSWEEF 505 + PL T PA PAA PK+ A Q D G WEEF Sbjct: 525 V-----APL------PTRPRPASVPAA--------RPKKLAAAQGNDGGDWEEF 559 >F1VZT6.1 F1VZT6_9BURK Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) Length = 503 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 211/285 (74%), Positives = 248/285 (87%) Query: 155 ASGDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLS 214 A GDLT +E +S DE G L+ SL TM L +T+ +++ A IAVA++EIA+GNADLS Sbjct: 207 ADGDLTAVIEVRSSDETGALLQSLKTMNDSLISTITQLRHGADTIAVATREIASGNADLS 266 Query: 215 NRTESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMG 274 +RTESQASSLE+TASSME+LT+TV+QNA+NA QANQLV++ASD A+KGG VVG+VV TM Sbjct: 267 SRTESQASSLEQTASSMEELTATVRQNADNARQANQLVIAASDLALKGGGVVGEVVGTMS 326 Query: 275 SIKESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 334 SIKESSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA Sbjct: 327 SIKESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAG 386 Query: 335 AAKEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAE 394 AA+EIKTLI D+VSKVD G KLVD+AG TM +IV+SVKHVADIM EITAAS+EQS GI+E Sbjct: 387 AAREIKTLIADTVSKVDNGSKLVDDAGQTMHQIVSSVKHVADIMAEITAASQEQSTGISE 446 Query: 395 VNGAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKI 439 VN AI+Q+DE+TQQN+ALV+QAAAAAESLQ+QA L RAV +F++ Sbjct: 447 VNQAISQMDEMTQQNSALVKQAAAAAESLQDQAVALTRAVAIFRL 491 >A6SU26.1 A6SU26_JANMA Methyl-accepting chemotaxis protein Length = 566 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/357 (63%), Positives = 257/357 (71%), Gaps = 26/357 (7%) Query: 155 ASGDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLS 214 A GDLT ++ +S DE GQL+ +L M L V E++ I AS EIA GN DLS Sbjct: 230 AGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLS 289 Query: 215 NRTESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMG 274 +RTE QASSLEETASSME+LTSTVKQNA+NA QANQL +SAS+ A+KGG VV VVQTM Sbjct: 290 SRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMS 349 Query: 275 SIKESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 334 SI ESSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAS Sbjct: 350 SINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAS 409 Query: 335 AAKEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAE 394 AAKEIK LIGDSV KVD G KLV EAG TM EIV S++ V DIMGEITAAS+EQSAGI + Sbjct: 410 AAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQ 469 Query: 395 VNGAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNAAFAAQPVNTPSM 454 +N AI Q+D +TQQNA+LVE+AAAAAES+Q+QA L + VG FK+DNA Sbjct: 470 INQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNA------------ 517 Query: 455 LKTVNPPLELATEAATHAAPAIKPAA--ARKTTLAPTPKR----STAPQDEGSWEEF 505 + NPP T AP KPAA A AP P+R + DE WE+F Sbjct: 518 -QEANPP---RASGVTRLAP--KPAAGSAGLAVAAPLPQRRANGALPAGDE--WEQF 566