BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0069.p (516 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value E2STN1.1 E2STN1_9RALS Aerotaxis receptor 268 1e-69 D8MZ00.1 D8MZ00_RALSO Flavoprotein, mediates positive aerotactic... 267 4e-69 Q8XT60.1 Q8XT60_RALSO Probable methyl-accepting chemotaxis trans... 266 6e-69 C6BMK5.1 C6BMK5_RALP1 Methyl-accepting chemotaxis sensory transd... 264 3e-68 B2UHK5.1 B2UHK5_RALPJ Methyl-accepting chemotaxis sensory transd... 264 3e-68 >E2STN1.1 E2STN1_9RALS Aerotaxis receptor Length = 529 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 181/531 (34%), Positives = 306/531 (57%), Gaps = 21/531 (3%) Query: 1 MAVTKKHTSAAQGVEYMITRTN-NTEISYANQAFARATGYTLEEVIGS--SFLRYSDLTT 57 + VT+ T A +Y+I+RT+ I +AN AF R +GY+ EE++G+ + +R+ D+ Sbjct: 5 LPVTEAET-ALTPTDYLISRTDLKGRIVFANPAFVRISGYSHEELMGAPHNLVRHPDM-- 61 Query: 58 PKIIGEDIRATVLGGQRWEGVLAVKCRDGSTFWSTTSISPWYENGKLTGSTAVRTMASEH 117 P+ D+ AT+ G+ W G + + +DG +W +++P ++N + G T+VR+MA+ Sbjct: 62 PEAAFADLWATLQAGKAWRGFVKNRRKDGGFYWVLANVTPVFQNNAVVGYTSVRSMATPA 121 Query: 118 EINKTKKLYKRITTHPKIFGIRAGKLVFRGIAAGLNLFL---WRRVSVAIALCIAIPCAT 174 +I + ++ Y I + +RAG+++ G +NLF R + + IA Sbjct: 122 QIARAQRAYTAINEGDTSYTVRAGRILRTGWRRAVNLFQIDSLRFKVIGLQTLIASAILI 181 Query: 175 TLLFTYFFSEST-----AQISFNKLLLISSIVSIVSV----GAVLALAYQTWFLPLRKSI 225 ++ + E+ A + F++ L + V + G +LA +T PL ++ Sbjct: 182 GTVWAHMALEAADLHGAAWLVFSRDWLWLTGVGCAGLATMSGVLLA---RTLIRPLEEAA 238 Query: 226 NELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIASGELSM 285 +++G+L E +++ +LG + A+ MR SL S++ +I+ G +S++ ++ ++S Sbjct: 239 TLATRLAAGDLTTVVEVRSSDELGEVMRAMGTMRASLSSIVRDIQDGAASVAHSTLQISA 298 Query: 286 GNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEEGIQAVSA 345 GN DLS RTE QAA+ E S + EL MVA+ A+ AR A A +A I+ +G Q V Sbjct: 299 GNHDLSARTEQQAAALEETASSMEELTSMVAQNADHARAASALAEQASTIAADGGQVVQR 358 Query: 346 AVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLL 405 V+ M I S+++ +++TIESIA QTN+LALNAAVEAARAG+ GRGFAVVA EVR L Sbjct: 359 VVQTMDAIRADSQRVTEIIATIESIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSL 418 Query: 406 ATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQ 465 A RS +A K++I+ S Q G V A + + Q+ +++ TV +M ++++ ++EQ Sbjct: 419 AQRSAQAAAQSKEIIRASDQSVRDGVDLVHKAGATMTQIVRSVQTVTQLMSEISASSREQ 478 Query: 466 NTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 ++ + +I+ ++ +D TQQNA LVE+ A+T +L QS+ L V+VFR Sbjct: 479 SSGIAQINASVSQLDGVTQQNATLVEEAAAATSVLARQSEDLKHAVAVFRA 529 >D8MZ00.1 D8MZ00_RALSO Flavoprotein, mediates positive aerotactic responses; signal transducer Length = 529 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 179/515 (34%), Positives = 296/515 (57%), Gaps = 16/515 (3%) Query: 15 EYMITRTNNT-EISYANQAFARATGYTLEEVIGS--SFLRYSDLTTPKIIGEDIRATVLG 71 +Y+I+RT+ + I +AN AF R +G+T E+IG+ + +R+ D+ P+ D+ AT+ Sbjct: 18 DYLISRTDPSGRIVFANPAFVRISGFTEAELIGAPHNVVRHPDM--PEAAFADLWATLRS 75 Query: 72 GQRWEGVLAVKCRDGSTFWSTTSISPWYENGKLTGSTAVRTMASEHEINKTKKLYKRITT 131 GQ W G++ + +DG +W +++P ++G +TG T+VR+MA +I + + Y I Sbjct: 76 GQPWRGLVKNRRKDGGFYWVQANVTPVLQDGAITGYTSVRSMAMPAQIARAGRAYAAIRA 135 Query: 132 HPKIFGIRAGKLVFRGIAAGLNLF----LWRRVSVAIALCIAIPCATTLLFTYFFSESTA 187 + +R+G+++ G NLF L RV + + IA+ L+ + E+ Sbjct: 136 GDTSYAVRSGRILRTGWRRLFNLFRGDSLRLRV-IGLQSLIAVAILIGTLWAHVALEAAD 194 Query: 188 QISFNKLLLISSIVSIVSVG-AVLA-----LAYQTWFLPLRKSINELHLISSGELEGQNE 241 L+L + + VG A LA L +T PL ++ +++G+L E Sbjct: 195 LRGTPWLVLSRDWLWLTGVGCAGLATLSGVLLARTLISPLEQAAALATRLAAGDLTSTLE 254 Query: 242 HKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIASGELSMGNLDLSRRTESQAAST 301 + ++G + A+ MR SL S++ +I+ G ++++ ++ ++S GN DLS RTE QAA+ Sbjct: 255 ARGNDEIGDVVRAMGTMRASLWSIVRDIQDGAANVAHSTLQISAGNHDLSARTEQQAAAL 314 Query: 302 AEITSGLGELIHMVAETANIARNAEKCASEAQNISEEGIQAVSAAVKCMAEIVESSRQMN 361 E S + +L MVA A+ AR+A A +A I+ +G Q V V M I SS+ + Sbjct: 315 QETASSMEQLTSMVARNADHARDASALADQASAIATDGGQVVQRVVDTMGAIRGSSQHVT 374 Query: 362 SVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLLATRSVEATENIKDLIK 421 +++TIESIA QTN+LALNAAVEAARAG+ GRGFAVVA EVR LA RS +A K++I+ Sbjct: 375 DIIATIESIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSLAQRSAQAAAQTKEIIQ 434 Query: 422 NSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQNTALDKIHHALEDIDQ 481 S Q G V A + + Q+ ++ TV +M ++++ ++EQ++ + +I+ ++ +D Sbjct: 435 ASDQSVRDGVALVQQAGATMQQIVASVQTVTQLMSEISASSREQSSGIAQINASVSQLDG 494 Query: 482 TTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 TQQNA LVE+ A+ +L QS++L V+VFR Sbjct: 495 VTQQNATLVEKAAAAASVLAGQSEALKRAVAVFRA 529 >Q8XT60.1 Q8XT60_RALSO Probable methyl-accepting chemotaxis transducer transmembrane protein Length = 529 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 180/529 (34%), Positives = 302/529 (57%), Gaps = 17/529 (3%) Query: 1 MAVTKKHTSAAQGVEYMITRTNNT-EISYANQAFARATGYTLEEVIGS--SFLRYSDLTT 57 + VT T+ A +Y+I+RT+ I +AN AF R +G+T E+IG+ + +R+ D+ Sbjct: 5 LPVTDAETTLAPA-DYLISRTDPAGRIVFANPAFVRISGFTEAELIGAPHNVVRHPDM-- 61 Query: 58 PKIIGEDIRATVLGGQRWEGVLAVKCRDGSTFWSTTSISPWYENGKLTGSTAVRTMASEH 117 P+ D+ AT+ GQ W G++ + +DG +W +++P ++G + G T+VR+MA+ Sbjct: 62 PEAAFADLWATLRSGQSWRGLVKNRRKDGGFYWVQANVTPVLQDGAIAGYTSVRSMATPA 121 Query: 118 EINKTKKLYKRITTHPKIFGIRAGKLVFRGIAAGLNLF----LWRRVSVAIALCIAIPCA 173 +I + ++Y I + +R+G+++ G NLF L RV + + IA+ Sbjct: 122 QIARAGRVYAAIRAGDASYAVRSGRILRTGWRRLFNLFRIDSLRLRV-IGLQSLIAVAIL 180 Query: 174 TTLLFTYFFSESTAQISFNKLLLISSIVSIVSVG-AVLA-----LAYQTWFLPLRKSINE 227 L+ + E+ L+L + + VG A LA L +T PL ++ Sbjct: 181 IGTLWAHLALEAADLRGMPWLVLSRDWLWLTGVGCAGLATLSGLLLARTLIRPLEQAAAL 240 Query: 228 LHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIASGELSMGN 287 +++G+L E + ++G + A+ MR SL S++ +I+ G ++++ ++ ++S GN Sbjct: 241 ATRLAAGDLTSTLEARGNDEIGDVVRAMGTMRASLWSIVRDIQDGAANVAHSTLQISAGN 300 Query: 288 LDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEEGIQAVSAAV 347 DLS RTE QAA+ E S + +L MVA A+ AR A A +A +++ +G + V V Sbjct: 301 HDLSARTEQQAAALQETASSMEQLTSMVARNADHAREASVLAEQASSVATDGGRIVQRVV 360 Query: 348 KCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLLAT 407 M I SSR + +++TIESIA QTN+LALNAAVEAARAG+ GRGFAVVA EVR LA Sbjct: 361 DTMGAIRGSSRHVTDIIATIESIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSLAQ 420 Query: 408 RSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQNT 467 RS +A K +I+ S Q G+ V A + + Q+ ++ TV ++ ++++ ++EQ++ Sbjct: 421 RSAQAAAQTKAIIQASDQSVRDGEALVQQAGATMQQIVASVQTVTQLISEISASSREQSS 480 Query: 468 ALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 + +I+ ++ +D TQQNA LVE+ A+ +L QS++L V+VFR Sbjct: 481 GIAQINTSVSQLDGVTQQNATLVEKAAAAASVLAGQSEALKRAVAVFRA 529 >C6BMK5.1 C6BMK5_RALP1 Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Length = 529 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 179/531 (33%), Positives = 304/531 (57%), Gaps = 21/531 (3%) Query: 1 MAVTKKHTSAAQGVEYMITRTN-NTEISYANQAFARATGYTLEEVIGS--SFLRYSDLTT 57 + VT+ T A +Y+I+RT+ I +AN AF R +GY +E++G+ + +R+ D+ Sbjct: 5 LPVTQAET-ALNPTDYLISRTDLKGLIVFANPAFVRISGYAHDELMGAPHNLVRHPDM-- 61 Query: 58 PKIIGEDIRATVLGGQRWEGVLAVKCRDGSTFWSTTSISPWYENGKLTGSTAVRTMASEH 117 P+ D+ AT+ G+ W G + + +DG +W +++P ++N + G T+VR+MA Sbjct: 62 PEAAFADLWATLQAGKPWRGFVKNRRKDGGFYWVLANVTPVFQNNAVVGYTSVRSMAMPA 121 Query: 118 EINKTKKLYKRITTHPKIFGIRAGKLVFRGIAAGLNLFL---WRRVSVAIALCIAIPCAT 174 +I + ++ Y I + +RAG+++ G +NLF R + + IA Sbjct: 122 QIARAQRAYTAINEGDTSYTVRAGRILRTGWRRVVNLFQIDSLRFKVIGLQTLIASAILI 181 Query: 175 TLLFTYFFSEST-----AQISFNKLLLISSIVSIVSV----GAVLALAYQTWFLPLRKSI 225 ++ + E+ A + F++ L + V + G +LA +T PL ++ Sbjct: 182 GTVWAHIALEAADLHGAAWLVFSRDWLWLTGVGCAGLATMSGVLLA---RTLIRPLEEAA 238 Query: 226 NELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIASGELSM 285 +++G+L E +++ +LG + A+ MR SL S++ +I+ G +S++ ++ ++S Sbjct: 239 TLATRLAAGDLTTVVEARSSDELGEVMRAMGTMRASLSSIVRDIQDGAASVAHSTQQISA 298 Query: 286 GNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEEGIQAVSA 345 GN DLS RTE QAA+ E S + EL MVA+ A+ AR A A +A I+ +G Q V Sbjct: 299 GNHDLSARTEQQAAALEETASSMEELTSMVAQNADHARAASALAEQASTIAADGGQVVQR 358 Query: 346 AVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLL 405 V+ M I S+++ +++TIESIA QTN+LALNAAVEAARAG+ GRGFAVVA EVR L Sbjct: 359 VVQTMDAIRADSQRVTEIIATIESIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSL 418 Query: 406 ATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQ 465 A RS +A K++I+ S Q G V A + + Q+ +++ TV +M ++++ ++EQ Sbjct: 419 AQRSAQAAAQSKEIIRASDQSVRDGVDLVHKAGATMTQIVQSVQTVTQLMSEISASSREQ 478 Query: 466 NTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 ++ + +I+ ++ +D TQQNA LVE+ A+T +L QS+ L ++VFR Sbjct: 479 SSGIAQINASVSQLDGVTQQNATLVEEAAAATSVLARQSEDLKHAIAVFRA 529 >B2UHK5.1 B2UHK5_RALPJ Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor Length = 529 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 179/531 (33%), Positives = 304/531 (57%), Gaps = 21/531 (3%) Query: 1 MAVTKKHTSAAQGVEYMITRTN-NTEISYANQAFARATGYTLEEVIGS--SFLRYSDLTT 57 + VT+ T A +Y+I+RT+ I +AN AF R +GY +E++G+ + +R+ D+ Sbjct: 5 LPVTQAET-ALNPTDYLISRTDLKGLIVFANPAFVRISGYAHDELMGAPHNLVRHPDM-- 61 Query: 58 PKIIGEDIRATVLGGQRWEGVLAVKCRDGSTFWSTTSISPWYENGKLTGSTAVRTMASEH 117 P+ D+ AT+ G+ W G + + +DG +W +++P ++N + G T+VR+MA Sbjct: 62 PEAAFADLWATLQAGKPWRGFVKNRRKDGGFYWVLANVTPVFQNNAVVGYTSVRSMAMPA 121 Query: 118 EINKTKKLYKRITTHPKIFGIRAGKLVFRGIAAGLNLFL---WRRVSVAIALCIAIPCAT 174 +I + ++ Y I + +RAG+++ G +NLF R + + IA Sbjct: 122 QIARAQRAYTAINEGDTSYTVRAGRILRTGWRRVVNLFQIDSLRFKVIGLQTLIASAILI 181 Query: 175 TLLFTYFFSEST-----AQISFNKLLLISSIVSIVSV----GAVLALAYQTWFLPLRKSI 225 ++ + E+ A + F++ L + V + G +LA +T PL ++ Sbjct: 182 GTVWAHIALEAADLHGAAWLVFSRDWLWLTGVGCAGLATMSGVLLA---RTLIRPLEEAA 238 Query: 226 NELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIASGELSM 285 +++G+L E +++ +LG + A+ MR SL S++ +I+ G +S++ ++ ++S Sbjct: 239 TLATRLAAGDLTTVVEARSSDELGEVMRAMGTMRASLSSIVRDIQDGAASVAHSTQQISA 298 Query: 286 GNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEEGIQAVSA 345 GN DLS RTE QAA+ E S + EL MVA+ A+ AR A A +A I+ +G Q V Sbjct: 299 GNHDLSARTEQQAAALEETASSMEELTSMVAQNADHARAASALAEQASTIAADGGQVVQR 358 Query: 346 AVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLL 405 V+ M I S+++ +++TIESIA QTN+LALNAAVEAARAG+ GRGFAVVA EVR L Sbjct: 359 VVQTMDAIRADSQRVTEIIATIESIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSL 418 Query: 406 ATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQ 465 A RS +A K++I+ S Q G V A + + Q+ +++ TV +M ++++ ++EQ Sbjct: 419 AQRSAQAAAQSKEIIRASDQSVRDGVDLVHKAGATMTQIVQSVQTVTQLMSEISASSREQ 478 Query: 466 NTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 ++ + +I+ ++ +D TQQNA LVE+ A+T +L QS+ L ++VFR Sbjct: 479 SSGIAQINASVSQLDGVTQQNATLVEEAAAATSVLARQSEDLKHAIAVFRA 529