BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0066.p (360 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D0J4T0.1 D0J4T0_COMT2 Gram-negative type outer membrane porin pr... 317 3e-84 B7WXX6.1 B7WXX6_COMTE Porin Gram-negative type 313 4e-83 D0IY34.1 D0IY34_COMT2 Gram-negative type outer membrane porin pr... 311 1e-82 D8NVI2.1 D8NVI2_RALSO Putative porin transmembrane protein 309 5e-82 D8ISQ9.1 D8ISQ9_HERSS Porin transmembrane protein 303 2e-80 >D0J4T0.1 D0J4T0_COMT2 Gram-negative type outer membrane porin protein Length = 364 Score = 317 bits (811), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 177/367 (48%), Positives = 230/367 (62%), Gaps = 11/367 (2%) Query: 1 MKKFIAAIPLL-IALPAVAQSGVTIYGIIDNGVEYVSNVNAAGQSVVKMPANT-SITSRL 58 +KK +AI LL + A AQS V IYGI+D VE ++NV A S+ +MP T S+ SRL Sbjct: 2 LKKVASAIALLGVGGLAYAQSSVQIYGIMDTAVETMNNVGATKSSLTRMPNLTGSVPSRL 61 Query: 59 GFKGTEDLGGGMTANFVLENGFTPDTGGLAQGGRLFGRQSNVSLGTPYGSFILGRQYSML 118 GF+G EDLGGG++A+F LE G PD+G L QGGR FGRQS VSL P+GS LGRQY+ML Sbjct: 62 GFRGREDLGGGLSASFTLEMGIGPDSGALNQGGRGFGRQSFVSLNGPWGSLGLGRQYTML 121 Query: 119 FYSMLSADVLGPNLFGSGALDSYIPNTRVDNTVGYMHKIANTAFGATYSLGRDTSAAG-G 177 F+S+L ADV+GP+L +LD+Y PN R DN + Y + GATYS GRD AG Sbjct: 122 FWSVLDADVIGPSLHSMASLDNYFPNARADNAISYKGTFSGLTVGATYSFGRDAVNAGPS 181 Query: 178 PAATNCAGETASDTKACKEWSLYAKYDVPGWGVSVGYDKLYGAPGVVFGGTSALRLSDYY 237 P TNCAGE+++D+K C+EWS KYD WG ++ +D+L G PG G TS SD Sbjct: 182 PGGTNCAGESSTDSKTCREWSAMLKYDTAAWGAALAHDELRGGPGAFAGLTS----SDKI 237 Query: 238 DARTNISGYVDIGNLRLGIGWIGRKNVS-AASYKQDLAFIGASYWTGPWSYEAELFSYTK 296 D RT ++GYV +G ++G G++ RKN AS + DL F+G +Y G WS +A+ Sbjct: 238 DKRTMLNGYVKLGGAKIGGGYMRRKNDGYIASPRNDLWFVGVTYPIGQWSVDAQYNQLKY 297 Query: 297 RNSPDDSMMLASRITYYLSKRTALYVTGGYLINKGNAANTVDGVTGAGV---GMNQVGIA 353 +++ D +L R TY LSKRTA Y + GY+ N GNAA G G+NQ G Sbjct: 298 KDNADKGQLLVLRGTYNLSKRTAAYASLGYMKNSGNAAFGASSAQAGGTPMPGVNQTGFG 357 Query: 354 SGIRHTF 360 G+RHTF Sbjct: 358 MGLRHTF 364 >B7WXX6.1 B7WXX6_COMTE Porin Gram-negative type Length = 364 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 173/367 (47%), Positives = 230/367 (62%), Gaps = 11/367 (2%) Query: 1 MKKFIAAIPLLIALPAV-AQSGVTIYGIIDNGVEYVSNVNAAGQSVVKMP-ANTSITSRL 58 +KK A+ LL A AQS V IYGI+D VE + +V A+ ++ +MP + S+ SRL Sbjct: 2 LKKIAGAVALLGAGGFTHAQSSVQIYGIMDTAVETMDHVGASRSTLTRMPNLSGSVPSRL 61 Query: 59 GFKGTEDLGGGMTANFVLENGFTPDTGGLAQGGRLFGRQSNVSLGTPYGSFILGRQYSML 118 GF+G EDLGGG++A+F LE G PD+G L QGGR FGRQS VSL P+GS LGRQY+ML Sbjct: 62 GFRGREDLGGGLSASFTLEMGIGPDSGALNQGGRGFGRQSFVSLNGPWGSLGLGRQYTML 121 Query: 119 FYSMLSADVLGPNLFGSGALDSYIPNTRVDNTVGYMHKIANTAFGATYSLGRDTSAAG-G 177 F+S+L ADV+GP+L +LDSY PN R DN + Y + GATYS GRD AG Sbjct: 122 FWSVLDADVIGPSLHSMASLDSYFPNARADNAISYKGVFSGLTIGATYSFGRDAVNAGPS 181 Query: 178 PAATNCAGETASDTKACKEWSLYAKYDVPGWGVSVGYDKLYGAPGVVFGGTSALRLSDYY 237 P+ TNCAGE+++D+K C+EWS KYD WG ++ +D+L G PG G L SD Sbjct: 182 PSGTNCAGESSTDSKTCREWSAMLKYDSATWGAALAHDELRGGPGAFAG----LSSSDKT 237 Query: 238 DARTNISGYVDIGNLRLGIGWIGRKNVS-AASYKQDLAFIGASYWTGPWSYEAELFSYTK 296 D R+ ++GYV G R+G G++ RKN AS + DL F+G SY GPW+ +A+ Sbjct: 238 DKRSMLNGYVKWGGARIGAGYMRRKNDGYIASPRNDLWFVGVSYPMGPWTLDAQYNQLNY 297 Query: 297 RNSPDDSMMLASRITYYLSKRTALYVTGGYLINKGNAANTVDGVTGAGV---GMNQVGIA 353 +++ D ++ R TY LSKRTA+Y + GY+ N GNAA G G+NQ G Sbjct: 298 KDNADKGQLMVLRGTYSLSKRTAVYASLGYMKNSGNAAFGASSAQAGGAPMPGVNQTGFG 357 Query: 354 SGIRHTF 360 +G+RHTF Sbjct: 358 AGLRHTF 364 >D0IY34.1 D0IY34_COMT2 Gram-negative type outer membrane porin protein Length = 364 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 175/368 (47%), Positives = 229/368 (62%), Gaps = 12/368 (3%) Query: 1 MKKFIAAIPLLIALP--AVAQSGVTIYGIIDNGVEYVSNVNAAGQSVVKMPANT-SITSR 57 M + IA+ L++L A AQS V IYGI+D VE ++NV A S+ +MP T S+ SR Sbjct: 1 MFRKIASTFALMSLGGLAHAQSSVQIYGIVDTAVETMNNVGATKSSLTRMPNLTGSVPSR 60 Query: 58 LGFKGTEDLGGGMTANFVLENGFTPDTGGLAQGGRLFGRQSNVSLGTPYGSFILGRQYSM 117 LGF+G EDLGGG++A+F LE G PD+G L QGGR FGRQS VSL P+GS LGRQY+M Sbjct: 61 LGFRGREDLGGGLSASFTLEMGIGPDSGALNQGGRGFGRQSFVSLNGPWGSLGLGRQYTM 120 Query: 118 LFYSMLSADVLGPNLFGSGALDSYIPNTRVDNTVGYMHKIANTAFGATYSLGRDTSAAG- 176 LF+S+L ADV+GP+L +LD+Y PN R DN + Y + GATYS GRD AG Sbjct: 121 LFWSVLDADVIGPSLHSMASLDNYFPNARADNAISYKGTFSGLTVGATYSFGRDAVNAGP 180 Query: 177 GPAATNCAGETASDTKACKEWSLYAKYDVPGWGVSVGYDKLYGAPGVVFGGTSALRLSDY 236 P TNCAGE+++D+K C+EWS KYD WG ++ +D+L G PG G TS SD Sbjct: 181 SPGGTNCAGESSTDSKTCREWSAMLKYDTAAWGAALAHDELRGGPGAFAGLTS----SDK 236 Query: 237 YDARTNISGYVDIGNLRLGIGWIGRKNVS-AASYKQDLAFIGASYWTGPWSYEAELFSYT 295 D RT ++GYV +G ++G G++ RKN AS + DL F+G +Y G WS +A+ Sbjct: 237 VDKRTMLNGYVKLGGAKIGGGYMRRKNDGYIASPRNDLWFVGVTYPIGQWSVDAQYNQLK 296 Query: 296 KRNSPDDSMMLASRITYYLSKRTALYVTGGYLINKGNAANTVDGVTGAGV---GMNQVGI 352 +++ D +L R TY LSKRTA Y + GY+ N GNAA G G+NQ G Sbjct: 297 YKDNADKGQLLVLRGTYNLSKRTAAYASLGYMKNSGNAAFGASSAQAGGTPLPGVNQTGF 356 Query: 353 ASGIRHTF 360 G+RH F Sbjct: 357 GMGLRHMF 364 >D8NVI2.1 D8NVI2_RALSO Putative porin transmembrane protein Length = 364 Score = 309 bits (791), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 174/368 (47%), Positives = 231/368 (62%), Gaps = 12/368 (3%) Query: 1 MKKFIAAIPLLIALPAVAQS-GVTIYGIIDNGVEYVSNVNAAGQSVVKMP-ANTSITSRL 58 MK A+ L +A+PA A + VT+YG++D GVEYV+ + AG SVV+MP + ++ SR Sbjct: 1 MKLRPLALSLWLAVPAFASAQSVTLYGVVDTGVEYVNRIGTAGSSVVRMPNLSGTVPSRW 60 Query: 59 GFKGTEDLGGGMTANFVLENGFTPDTGGLAQGGRLFGRQSNVSLG-TPYGSFILGRQYSM 117 G +GTEDLGGG A F LE+GF PD+G QGGRLFGRQ+ V L + +G GRQY+M Sbjct: 61 GLRGTEDLGGGTKALFTLESGFAPDSGTANQGGRLFGRQAWVGLSNSNWGQLSFGRQYTM 120 Query: 118 LFYSMLSADVLGPNLFGSGALDSYIPNTRVDNTVGYMHKIANTAFGATYSLGRDTSAAG- 176 LF++ L D+LGPN +GS +LDSY+PNTR DN + Y K GATYS GRDT AG Sbjct: 121 LFWATLDTDLLGPNAYGSSSLDSYLPNTRADNAIAYKGKFGGLTVGATYSFGRDTVNAGP 180 Query: 177 GPAATNCAGETASDTKACKEWSLYAKYDVPGWGVSVGYDKLYGAPGVVFGGTSALRLSDY 236 P+ TNCAGE +D++AC+EWS Y+ GWGVS YD L G PG G TS S Sbjct: 181 SPSGTNCAGENPADSRACREWSAMLMYETRGWGVSAAYDSLRGGPGAFAGLTS----SSL 236 Query: 237 YDARTNISGYVDIGNLRLGIGWIGRKNVSAASYKQDLAFIGASY-WTGPWSYEAELFSYT 295 D R + GY N ++G+GWIGR+N + A+ + DL + GA+Y T + E+F Sbjct: 237 KDDRLALGGYALFDNAKIGLGWIGRRNGALATPRSDLFYAGAAYDVTAALTLTGEVFHLR 296 Query: 296 KRNSPDDSMMLASRITYYLSKRTALYVTGGYLINKGNAANTVDG-VTGA--GVGMNQVGI 352 NS + + + A R +Y LSKR+++Y T GY+ N GN A +V G TGA G NQ+G Sbjct: 297 YHNSANKAWLGAVRASYALSKRSSVYATLGYIENGGNLALSVSGAATGASPAAGGNQLGT 356 Query: 353 ASGIRHTF 360 G++H F Sbjct: 357 MIGVKHVF 364 >D8ISQ9.1 D8ISQ9_HERSS Porin transmembrane protein Length = 365 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 171/349 (48%), Positives = 226/349 (64%), Gaps = 14/349 (4%) Query: 19 QSGVTIYGIIDNGVEYVSNVNAAGQSVVKMPANT-SITSRLGFKGTEDLGGGMTANFVLE 77 QS VTIYGIID GV Y +N NA G SV KMP+ T S SR+GFKGTEDLGGG+ A FVLE Sbjct: 24 QSSVTIYGIIDTGVVYTTNANANGNSVFKMPSLTGSFPSRIGFKGTEDLGGGLQAMFVLE 83 Query: 78 NGFTPDTGGLAQGGRLFGRQSNVSLGTPYGSFILGRQYSMLFYSMLSADVLGPNLFGSGA 137 +GF PDTG + QGGRLFGRQS V L +G +LGRQ +M + S L DV+GPNLF G+ Sbjct: 84 SGFAPDTGAMGQGGRLFGRQSYVGLKNSWGQLMLGRQVNMTYLSQLKTDVMGPNLFAIGS 143 Query: 138 LDSYIPNTRVDNTVGYMHKIANTAFGATYSLGRDTSAAGGPAATNCAGETASDTKACKEW 197 +D+Y+PN R DN +GY+ + GATYS GRD + GPAATNC GE A ++KAC++ Sbjct: 144 IDAYLPNARSDNAIGYLGNFSGFTVGATYSFGRDAAGPAGPAATNCPGEVAGNSKACRQV 203 Query: 198 SLYAKYDVPGWGVSVGYDKLYGAPGVVFGGTSALRLSDYYDARTNISGYVDIGNLRLGIG 257 + YD GWGV+ YD LYG G G TS SD D R ++GY +G++++G G Sbjct: 204 TALLGYDGKGWGVTSSYDILYGNTGASNGMTS----SDNTDQRVTLNGYFMLGDVKIGGG 259 Query: 258 WIGRKNVSAASYK--QDLAFIGASYWTGPWS----YEAELFSYTKRNSPDDSMMLASRIT 311 + R+ +AA+ DL ++G SY P S +A++ +NSP+D + +R+T Sbjct: 260 VVDRRTRAAANTNTDSDLYYLGVSY---PLSVALVLDAQVSRLDVKNSPNDVTLSVARLT 316 Query: 312 YYLSKRTALYVTGGYLINKGNAANTVDGVTGAGVGMNQVGIASGIRHTF 360 Y LSKRTA+Y + GY+ N G ++ +D G G NQ+G+ +GIRHTF Sbjct: 317 YNLSKRTAVYGSLGYIKNGGTSSVALDAGGTVGAGKNQLGVMTGIRHTF 365